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Pay0014245 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0014245
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptionribosome biogenesis protein BRX1 homolog
Genome locationchr10:16239001..16241065
RNA-Seq ExpressionPay0014245
SyntenyPay0014245
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR026532 - Ribosome biogenesis protein BRX1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031641.1 ribosome biogenesis protein BRX1-like protein [Cucumis melo var. makuwa]2.5e-4079.46Show/hide
Query:  MRSGRLMKAKRVNKNENALFCGPKQKERILIAKGCSFSKNRCNEFNDFGTDGGPAA---------------NAIEELKLIGNYLKGSRPILTFSSNFDKD
        MRSGRLMKAKRVNKNENALFCGPKQKERI +AKGCSFSKNRCNEFNDFGT+ GP A               +A+EELKLIGNYLKGSRPILTFSSNFDKD
Subjt:  MRSGRLMKAKRVNKNENALFCGPKQKERILIAKGCSFSKNRCNEFNDFGTDGGPAA---------------NAIEELKLIGNYLKGSRPILTFSSNFDKD

Query:  VLWKLLKEMIIQ
        VLWKL+KEMIIQ
Subjt:  VLWKLLKEMIIQ

XP_008450669.1 PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo]1.4e-1147.79Show/hide
Query:  LMKAKRVNKNENALFCGPKQKERILIAKGCSFSK-NRCNEFNDF-----GTDGGP-------AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLK
        L   K+ NK E+    G    E + + KGCS S    C +  D          GP       A + +EELKL GN+LKGSRPILTFSSNFDKDV WKLLK
Subjt:  LMKAKRVNKNENALFCGPKQKERILIAKGCSFSK-NRCNEFNDF-----GTDGGP-------AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLK

Query:  EMIIQKFTSSPNH
        EMIIQ F +   H
Subjt:  EMIIQKFTSSPNH

XP_008456708.1 PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo]2.2e-1285.11Show/hide
Query:  AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTS
        A +A+EELKLIGNYLKGSRPILTFSSNFDKDVLWKL+KEMIIQ   S
Subjt:  AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTS

XP_008460241.1 PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo]6.5e-4999Show/hide
Query:  NAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKVSTTFTFSMCNPFIVLFYMCCCFKNYLVKRTTRLREVFNTRKEVIIEC
        +AIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKVSTTFTFSMCNPFIVLFYMCCCFKNYLVKRTTRLREVFNTRKEVIIEC
Subjt:  NAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKVSTTFTFSMCNPFIVLFYMCCCFKNYLVKRTTRLREVFNTRKEVIIEC

XP_016899860.1 PREDICTED: uncharacterized protein LOC103487553 [Cucumis melo]4.6e-1865.12Show/hide
Query:  RSGRLMKAKRVNKNENALFCGPKQKERILIAKGCSFSKNRCNEFNDFGTDGGPAANAIEELKLIGNYLKGSRPILTFSSNFDKDVL
        RSGRLMKAKRVNKNENALFCGPKQKERI +AKGCSFSKNRCNE N            IE  + +      +   LTFSSNFDKDVL
Subjt:  RSGRLMKAKRVNKNENALFCGPKQKERILIAKGCSFSKNRCNEFNDFGTDGGPAANAIEELKLIGNYLKGSRPILTFSSNFDKDVL

TrEMBL top hitse value%identityAlignment
A0A1S3BQS3 ribosome biogenesis protein BRX1-like6.9e-1247.79Show/hide
Query:  LMKAKRVNKNENALFCGPKQKERILIAKGCSFSK-NRCNEFNDF-----GTDGGP-------AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLK
        L   K+ NK E+    G    E + + KGCS S    C +  D          GP       A + +EELKL GN+LKGSRPILTFSSNFDKDV WKLLK
Subjt:  LMKAKRVNKNENALFCGPKQKERILIAKGCSFSK-NRCNEFNDF-----GTDGGP-------AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLK

Query:  EMIIQKFTSSPNH
        EMIIQ F +   H
Subjt:  EMIIQKFTSSPNH

A0A1S3C4K0 ribosome biogenesis protein BRX1 homolog1.1e-1285.11Show/hide
Query:  AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTS
        A +A+EELKLIGNYLKGSRPILTFSSNFDKDVLWKL+KEMIIQ   S
Subjt:  AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTS

A0A1S3CC56 ribosome biogenesis protein BRX1 homolog3.2e-4999Show/hide
Query:  NAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKVSTTFTFSMCNPFIVLFYMCCCFKNYLVKRTTRLREVFNTRKEVIIEC
        +AIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKVSTTFTFSMCNPFIVLFYMCCCFKNYLVKRTTRLREVFNTRKEVIIEC
Subjt:  NAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKVSTTFTFSMCNPFIVLFYMCCCFKNYLVKRTTRLREVFNTRKEVIIEC

A0A1S4DVW8 uncharacterized protein LOC1034875532.2e-1865.12Show/hide
Query:  RSGRLMKAKRVNKNENALFCGPKQKERILIAKGCSFSKNRCNEFNDFGTDGGPAANAIEELKLIGNYLKGSRPILTFSSNFDKDVL
        RSGRLMKAKRVNKNENALFCGPKQKERI +AKGCSFSKNRCNE N            IE  + +      +   LTFSSNFDKDVL
Subjt:  RSGRLMKAKRVNKNENALFCGPKQKERILIAKGCSFSKNRCNEFNDFGTDGGPAANAIEELKLIGNYLKGSRPILTFSSNFDKDVL

A0A5A7SQ25 Ribosome biogenesis protein BRX1-like protein1.2e-4079.46Show/hide
Query:  MRSGRLMKAKRVNKNENALFCGPKQKERILIAKGCSFSKNRCNEFNDFGTDGGPAA---------------NAIEELKLIGNYLKGSRPILTFSSNFDKD
        MRSGRLMKAKRVNKNENALFCGPKQKERI +AKGCSFSKNRCNEFNDFGT+ GP A               +A+EELKLIGNYLKGSRPILTFSSNFDKD
Subjt:  MRSGRLMKAKRVNKNENALFCGPKQKERILIAKGCSFSKNRCNEFNDFGTDGGPAA---------------NAIEELKLIGNYLKGSRPILTFSSNFDKD

Query:  VLWKLLKEMIIQ
        VLWKL+KEMIIQ
Subjt:  VLWKLLKEMIIQ

SwissProt top hitse value%identityAlignment
Q3SZZ0 Ribosome biogenesis protein BRX1 homolog2.7e-0542.19Show/hide
Query:  NAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMK---VSTTFTFSM
        + + ELK+ GN LKGSRP+L+F   FD+   + LLKE++IQ F++   H      V   FTF++
Subjt:  NAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMK---VSTTFTFSM

Q8UVY2 Ribosome biogenesis protein BRX1 homolog1.2e-0538.55Show/hide
Query:  NAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMK---VSTTFTFSMCNPFIVLFYMCCCFKNYLV
        + + ELK+ GN LKGSRPIL+F   FD++  + LLKE++ Q F +   H      V   FTFS+ +  I        F+NY +
Subjt:  NAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMK---VSTTFTFSMCNPFIVLFYMCCCFKNYLV

Q9C928 Ribosome biogenesis protein BRX1 homolog 23.0e-1248.24Show/hide
Query:  AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKV---STTFTFSMCNPFIVLFYMCCCFKNYLV
        A +A+EE+KL GN+LKGSRP+LTFSSNFDKD  WKLLKEM+ Q F     H          F FS+ +  I        F+NY +
Subjt:  AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKV---STTFTFSMCNPFIVLFYMCCCFKNYLV

Q9LE16 Ribosome biogenesis protein BRX1 homolog 17.4e-1144.21Show/hide
Query:  GGP-------AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKV---STTFTFSMCNPFIVLFYMCCCFKNYLV
        GGP       A + +EELKL GN+LKGSRP+LTFSSNF+ D  WKLLKEM+ Q F     H          F FS+ +  I        F+NY +
Subjt:  GGP-------AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKV---STTFTFSMCNPFIVLFYMCCCFKNYLV

Q9VZE6 Ribosome biogenesis protein BRX1 homolog1.4e-0644.44Show/hide
Query:  NDFGTDGGPAANAIE------ELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMK----VSTTFTFS
        N  G+ G  A   IE      ELK+ GN L+GSRP+L+F S FD+    KLLKE+ +Q + S PNH  K    V   FTF+
Subjt:  NDFGTDGGPAANAIE------ELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMK----VSTTFTFS

Arabidopsis top hitse value%identityAlignment
AT1G52930.1 Ribosomal RNA processing Brix domain protein2.1e-1348.24Show/hide
Query:  AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKV---STTFTFSMCNPFIVLFYMCCCFKNYLV
        A +A+EE+KL GN+LKGSRP+LTFSSNFDKD  WKLLKEM+ Q F     H          F FS+ +  I        F+NY +
Subjt:  AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKV---STTFTFSMCNPFIVLFYMCCCFKNYLV

AT3G15460.1 Ribosomal RNA processing Brix domain protein5.2e-1244.21Show/hide
Query:  GGP-------AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKV---STTFTFSMCNPFIVLFYMCCCFKNYLV
        GGP       A + +EELKL GN+LKGSRP+LTFSSNF+ D  WKLLKEM+ Q F     H          F FS+ +  I        F+NY +
Subjt:  GGP-------AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKV---STTFTFSMCNPFIVLFYMCCCFKNYLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGTGGTCGCTTGATGAAAGCGAAAAGGGTGAATAAAAATGAAAACGCTTTGTTCTGTGGTCCTAAACAAAAAGAAAGAATTTTAATAGCAAAGGGTTGTTCTTT
TTCTAAGAATAGGTGCAATGAGTTCAATGATTTTGGTACTGATGGAGGACCGGCAGCCAATGCAATAGAAGAATTGAAGCTTATAGGGAACTATCTTAAAGGTTCCCGTC
CAATTTTGACATTTTCATCGAATTTTGATAAAGATGTCCTCTGGAAACTTCTGAAGGAAATGATTATTCAGAAATTCACATCTTCTCCTAATCACAGTATGAAGGTTAGT
ACAACGTTTACATTTTCAATGTGCAACCCTTTCATAGTTTTGTTTTATATGTGTTGTTGCTTCAAGAATTATTTGGTGAAACGTACTACGAGGCTTCGTGAAGTATTTAA
CACCCGTAAAGAAGTAATTATTGAGTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGTGGTCGCTTGATGAAAGCGAAAAGGGTGAATAAAAATGAAAACGCTTTGTTCTGTGGTCCTAAACAAAAAGAAAGAATTTTAATAGCAAAGGGTTGTTCTTT
TTCTAAGAATAGGTGCAATGAGTTCAATGATTTTGGTACTGATGGAGGACCGGCAGCCAATGCAATAGAAGAATTGAAGCTTATAGGGAACTATCTTAAAGGTTCCCGTC
CAATTTTGACATTTTCATCGAATTTTGATAAAGATGTCCTCTGGAAACTTCTGAAGGAAATGATTATTCAGAAATTCACATCTTCTCCTAATCACAGTATGAAGGTTAGT
ACAACGTTTACATTTTCAATGTGCAACCCTTTCATAGTTTTGTTTTATATGTGTTGTTGCTTCAAGAATTATTTGGTGAAACGTACTACGAGGCTTCGTGAAGTATTTAA
CACCCGTAAAGAAGTAATTATTGAGTGTTAG
Protein sequenceShow/hide protein sequence
MRSGRLMKAKRVNKNENALFCGPKQKERILIAKGCSFSKNRCNEFNDFGTDGGPAANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKVS
TTFTFSMCNPFIVLFYMCCCFKNYLVKRTTRLREVFNTRKEVIIEC