CuGenDBv2

Gene ID	Pay0014327
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr01:16779010..16779928
RNA-Seq Expression	Pay0014327
Synteny	Pay0014327
Gene Ontology terms	NA
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048262.1 hypothetical protein E6C27_scaffold63G001830 [Cucumis melo var. makuwa]

2.4e-47

63.69

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Query:  MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP--------------------------------------------------------
        MKDLGEAD+ILGVKIRKNKTSLSL QSHYVEKIL+KF+SFDVSP                                                        
Subjt:  MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP--------------------------------------------------------

Query:  --CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLVDPLTKGLTRKMVLDSSVNMGLKPFRDP
          CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNL DPLTKGLTRKMVLDSSVNMGLKPF  P
Subjt:  --CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLVDPLTKGLTRKMVLDSSVNMGLKPFRDP

KAA0058501.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

1.0e-45

58.16

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Query:  LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP-----------------------------------------------------------
        LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKF+SFDVSP                                                           
Subjt:  LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP-----------------------------------------------------------

Query:  -------------------CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLVDPLTKGLTRKMVLDSSVNMGLKPFRDP
                           CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNL DPLTKGLTRKMVLDSS+NMGLKPF DP
Subjt:  -------------------CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLVDPLTKGLTRKMVLDSSVNMGLKPFRDP

KAA0063384.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.7e-45

55.56

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Query:  MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP--------------------------------------------------------
        MKDLGEAD+ILGVKIRKNK SLSLCQSHYVEKILKKFD FDVSP                                                        
Subjt:  MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP--------------------------------------------------------

Query:  ------------------------------CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLVDPLTKGLTRKMVLDSSVNMG
                                      CDSQAAICTAKNSVYNGKSRHIRLRH VVKQLLKEGTISLEFVRSEKNL DPLTKGLTRKMVLDSSVNMG
Subjt:  ------------------------------CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLVDPLTKGLTRKMVLDSSVNMG

Query:  LKPFRDP
        LKPF DP
Subjt:  LKPFRDP

TYK06518.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

9.2e-47

43.46

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Query:  MELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP----------------------------------------
        MELITDTK+FLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP                                        
Subjt:  MELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP----------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------------------------CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLVDPLTKGLTRKMVLDSSVNMGL
                                     CDSQAAICTAKNSVYNGKSRH+RLRHAVVKQLLKEGTISLEFVRSEKNL DPLTKGLTRKMVLDSSVNMGL
Subjt:  -----------------------------CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLVDPLTKGLTRKMVLDSSVNMGL

Query:  KPFRDP
        KPF DP
Subjt:  KPFRDP

XP_008441939.1 PREDICTED: uncharacterized protein LOC103485933 [Cucumis melo]

8.6e-61

89.05

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Query:  MELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISL
        MELITDTK FLSSHFEMKDLGEADVILGVK RKNKTSLSLCQSHYVEKILKKFDSFDVSP DSQ AICT KN+VYNGKSRHIRLRHA+VKQLLKE TIS+
Subjt:  MELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISL

Query:  EFVRSEKNLVDPLTKGLTRKMVLDSSVNMGLKPFRDP
        EFVRSEKNL +PLTKGLTRK+VLDS +NMGLKPF DP
Subjt:  EFVRSEKNLVDPLTKGLTRKMVLDSSVNMGLKPFRDP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B571 uncharacterized protein LOC103485933

4.1e-61

89.05

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Query:  MELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISL
        MELITDTK FLSSHFEMKDLGEADVILGVK RKNKTSLSLCQSHYVEKILKKFDSFDVSP DSQ AICT KN+VYNGKSRHIRLRHA+VKQLLKE TIS+
Subjt:  MELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISL

Query:  EFVRSEKNLVDPLTKGLTRKMVLDSSVNMGLKPFRDP
        EFVRSEKNL +PLTKGLTRK+VLDS +NMGLKPF DP
Subjt:  EFVRSEKNLVDPLTKGLTRKMVLDSSVNMGLKPFRDP

A0A5A7TXL0 Uncharacterized protein

1.2e-47

63.69

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Query:  MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP--------------------------------------------------------
        MKDLGEAD+ILGVKIRKNKTSLSL QSHYVEKIL+KF+SFDVSP                                                        
Subjt:  MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP--------------------------------------------------------

Query:  --CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLVDPLTKGLTRKMVLDSSVNMGLKPFRDP
          CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNL DPLTKGLTRKMVLDSSVNMGLKPF  P
Subjt:  --CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLVDPLTKGLTRKMVLDSSVNMGLKPFRDP

A0A5A7UYD5 Ty1-copia retrotransposon protein

4.9e-46

58.16

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Query:  LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP-----------------------------------------------------------
        LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKF+SFDVSP                                                           
Subjt:  LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP-----------------------------------------------------------

Query:  -------------------CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLVDPLTKGLTRKMVLDSSVNMGLKPFRDP
                           CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNL DPLTKGLTRKMVLDSS+NMGLKPF DP
Subjt:  -------------------CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLVDPLTKGLTRKMVLDSSVNMGLKPFRDP

A0A5D3C5T2 Ty1-copia retrotransposon protein

4.4e-47

43.46

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Query:  MELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP----------------------------------------
        MELITDTK+FLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP                                        
Subjt:  MELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP----------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------------------------CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLVDPLTKGLTRKMVLDSSVNMGL
                                     CDSQAAICTAKNSVYNGKSRH+RLRHAVVKQLLKEGTISLEFVRSEKNL DPLTKGLTRKMVLDSSVNMGL
Subjt:  -----------------------------CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLVDPLTKGLTRKMVLDSSVNMGL

Query:  KPFRDP
        KPF DP
Subjt:  KPFRDP

A0A5D3CMJ4 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.4e-46

55.56

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Query:  MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP--------------------------------------------------------
        MKDLGEAD+ILGVKIRKNK SLSLCQSHYVEKILKKFD FDVSP                                                        
Subjt:  MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP--------------------------------------------------------

Query:  ------------------------------CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLVDPLTKGLTRKMVLDSSVNMG
                                      CDSQAAICTAKNSVYNGKSRHIRLRH VVKQLLKEGTISLEFVRSEKNL DPLTKGLTRKMVLDSSVNMG
Subjt:  ------------------------------CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLVDPLTKGLTRKMVLDSSVNMG

Query:  LKPFRDP
        LKPF DP
Subjt:  LKPFRDP

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.1e-05

42.42

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Query:  LITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTS--LSLCQSHYVEKILKKFDSFDVSPCDSQAA
        LI   K  LS  F+MKDLG A  ILG+KI + +TS  L L Q  Y+E++L++F+  +  P  +  A
Subjt:  LITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTS--LSLCQSHYVEKILKKFDSFDVSPCDSQAA

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.6e-04

32.2

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Query:  CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLVDPLTKGLTR
        CDSQ+AI  +KNS+Y+ +++HI +R+  +++++ + ++ +  + + +N  D LTK + R
Subjt:  CDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLVDPLTKGLTR

Arabidopsis top hits

e value

%identity

Alignment

ATMG00810.1 DNA/RNA polymerases superfamily protein

1.2e-04

36.23

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Query:  FFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPCDS------QAAICTAK
        F LSS F MKDLG     LG++I+ + + L L Q+ Y E+IL      D  P  +       +++ TAK
Subjt:  FFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPCDS------QAAICTAK

Sequences

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CDS sequence

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ATGGAGTTAATAACTGATACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACCTGGGAGAAGCAGACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACCAG
TTTGTCTCTATGTCAATCTCATTACGTAGAGAAAATACTAAAGAAGTTTGATTCCTTTGATGTTTCTCCTTGTGATTCGCAAGCCGCGATATGTACTGCCAAGAACAGTG
TTTATAATGGTAAAAGTAGACACATACGTCTTAGGCATGCAGTAGTAAAACAACTGCTAAAGGAAGGAACCATCTCCTTGGAATTTGTTCGATCTGAGAAGAACTTGGTT
GATCCTTTAACCAAAGGACTAACAAGAAAAATGGTATTAGATTCCTCTGTGAACATGGGCCTGAAGCCCTTCAGAGATCCATAG

mRNA sequence

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Protein sequence

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MELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLV
DPLTKGLTRKMVLDSSVNMGLKPFRDP

Pay0014327 (gene) of Melon (Payzawat) v1 genome