| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0038009.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 3.3e-237 | 92.42 | Show/hide |
Query: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDE-ATTTAELWKKLESLYLTKSLSNK
MASTRFEVSKFN NGDFALWRKKIRAILVQHKVAKILDEGRLPANITE+EKRDM+EMAYSTIL+YLS EVLRLVDE TTTAELWKKLESLYLTKSL NK
Subjt: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDE-ATTTAELWKKLESLYLTKSLSNK
Query: IYIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARG
IYIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPE YR VKAAIKYGRDSLTMSIV DALKTRNL+IKKERKDGELLMARG
Subjt: IYIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARG
Query: RSDKKNWKGKEKSSRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHM
RSDKK WKGKEKSSRMNSN EARKCFLCHK GHFKKNCPLNKSREASTSEANVTDGYNSA IT GYDS ETGYESAEVLMVSHRDIQDAWIMDSGCTYHM
Subjt: RSDKKNWKGKEKSSRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHM
Query: TPNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVL
TPN DFLINFQKSDGGKVLL DNGTCEVKGTG VLIATHDGMIRMLTN+RYVPELKRNLISL ELD+S YTIK+E GIMKVTKGSLVKLRGTL N LYVL
Subjt: TPNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVL
Query: EGTAVSGSATKALKQQKQQIVDHVVTNIRIDGVQSSGKGSDISSDQSPLVSQIEATEQSEFDGVQSEQERTLIDE
EG AVS SATKALKQQKQQIVDHVVT+IRIDGVQSSGKGSDI SDQSPLVSQIEATE+SEFDGVQS+QERTLI+E
Subjt: EGTAVSGSATKALKQQKQQIVDHVVTNIRIDGVQSSGKGSDISSDQSPLVSQIEATEQSEFDGVQSEQERTLIDE
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| KAA0046503.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 2.2e-217 | 88.1 | Show/hide |
Query: GNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKIYIKEKFFGYKMD
GNGDFALWRKKIRAILVQHKVAKILDEGR+PANITESEKRDM+EMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSL NKIYIKEKFFGYK+D
Subjt: GNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKIYIKEKFFGYKMD
Query: QSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGRSDKKNWKGKEKS
QSKSLEENLNEFQKIVVDLNNIGEKMSDENQ IILLNSLP+ YR VKAAIKYG+DSLTMSIVLDALKTRNLEIKKERKDGELLMARGRSDKKNWKGKEKS
Subjt: QSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGRSDKKNWKGKEKS
Query: SRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHMTPNWDFLINFQKS
SRMNSN EARK FLCHK GHFKKNCPLNKSREA TSE NVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWI DSGCTYHMTPN DFLINFQKS
Subjt: SRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHMTPNWDFLINFQKS
Query: DGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVLEGTAVSGSATKAL
DGGKVLL DNGTCEVKGTG VLIATHDGMIRMLTN+RYVPELKRNLISLG+LD+SGYTIKFE GIMKVTKGSLVKLRGTL NGLYVLEGTAV
Subjt: DGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVLEGTAVSGSATKAL
Query: KQQKQQIVDHVVTNIRIDGVQSSGKGSDISSDQSPLVSQIEATEQSEFDGVQSEQERTLIDE
SGKGSDISSDQSPLVSQIEATEQSEFDGVQS+ ERTLIDE
Subjt: KQQKQQIVDHVVTNIRIDGVQSSGKGSDISSDQSPLVSQIEATEQSEFDGVQSEQERTLIDE
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| KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa] | 2.2e-196 | 87.83 | Show/hide |
Query: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKI
MASTRFEVSKFNG+GDFALWRKKIRAILVQHKVAKILDE RLP NITESEKRDM+EMAY TILLYLSDEVLRLVDEATTT ELWKKLESLYLTKSL NKI
Subjt: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKI
Query: YIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGR
YIKEKFFGYKMDQSK LEENL+EFQKIVVDLNNIGEKMSDENQA+ILLNSLPE YR VKAAIKYG DSLTMSIVLDALKTRNLEIKKERKDGELLMARGR
Subjt: YIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGR
Query: SDKKNWKGKEKSSRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHMT
S+KK+WKGKE+S R S ++RKCFLCHK GHFKKNCPLNKSREASTSEANVTDGYNSA+ITDG DS ETGYESAEVLMVSHRDIQDAWIMDSGCT+HMT
Subjt: SDKKNWKGKEKSSRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHMT
Query: PNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVLE
P+ DFL NFQK DGGKVLL DNGTC+VKGTG V IATHDGM+R+LTN+RYVP+LKRNLISLGELD+SG TIK E G+MKVTKGSLVKLRGTL +GLYVLE
Subjt: PNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVLE
Query: GTAVSGSATKA
GT VSGSA A
Subjt: GTAVSGSATKA
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| KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa] | 2.1e-199 | 88.56 | Show/hide |
Query: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKI
MASTRFEVSKFNG+GDF+LWRKKIRAILVQHKVAKILDE RLP NITESEKRDM+EMAYSTILLYLSDEVLRLVDEATTT ELWKKLESLYLTKSL NKI
Subjt: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKI
Query: YIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGR
YIKEKFFGYKMDQSKSLEENL+EFQKIVVDLNNIGEKMSDENQA+ILLNSLPE YR VKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGR
Subjt: YIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGR
Query: SDKKNWKGKEKSSRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHMT
S+KK+WKGKE+S R S ++RKCFLCHK GHFKKNCPLNKSREASTSEANVTDGYNSA+ITDGYDS ETGYESAEVLMVSHRDIQDAWIMDSGCT+HMT
Subjt: SDKKNWKGKEKSSRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHMT
Query: PNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVLE
P+ DFL NFQK DGGKVLL DNGTC+VKGTG V IATHDGM+R+LTN+RYVP+LKRNLISLGELD+SG TIK E G+MKVTKGSLVKLRGTL +GLYVLE
Subjt: PNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVLE
Query: GTAVSGSATKA
GT VSGSA A
Subjt: GTAVSGSATKA
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| TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa] | 7.2e-200 | 88.81 | Show/hide |
Query: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKI
MASTRFEVSKFNG+GDFALWRKKIRAILVQHKVAKILDE RLP NITESEKRDM+EMAYSTILLYLSDEVLRLVDEATTT ELWKKLESLYLTKSL NKI
Subjt: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKI
Query: YIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGR
YIKEKFFGYKMDQSKSLEENL+EFQKIVVDLNNIGEKMSDENQA+ILLNSLPE YR VKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGR
Subjt: YIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGR
Query: SDKKNWKGKEKSSRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHMT
S+KK+WKGKE+S R S ++RKCFLCHK GHFKKNCPLNKSREASTSEANVTDGYNSA+ITDGYDS ETGYESAEVLMVSHRDIQDAWIMDSGCT+HMT
Subjt: SDKKNWKGKEKSSRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHMT
Query: PNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVLE
P+ DFL NFQK DGGKVLL DNGTC+VKGTG V IATHDGM+R+LTN+RYVP+LKRNLISLGELD+SG TIK E G+MKVTKGSLVKLRGTL +GLYVLE
Subjt: PNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVLE
Query: GTAVSGSATKA
GT VSGSA A
Subjt: GTAVSGSATKA
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class | 7.7e-06 | 59.68 | Show/hide |
Query: KQQKQQIVDHVVTNIRIDGVQSSGKGSDISSDQSPLVSQIEATEQSEFDGVQSEQERTLIDE
+QQKQQ DHVVT +RI S + S +Q PLVS+IE T+QSEFDG+QS+QER LIDE
Subjt: KQQKQQIVDHVVTNIRIDGVQSSGKGSDISSDQSPLVSQIEATEQSEFDGVQSEQERTLIDE
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| A0A5A7UB25 Putative gag-pol polyprotein | 7.7e-06 | 59.68 | Show/hide |
Query: KQQKQQIVDHVVTNIRIDGVQSSGKGSDISSDQSPLVSQIEATEQSEFDGVQSEQERTLIDE
+QQKQQ DHVVT +RI S + S +Q PLVS+IE T+QSEFDG+QS+QER LIDE
Subjt: KQQKQQIVDHVVTNIRIDGVQSSGKGSDISSDQSPLVSQIEATEQSEFDGVQSEQERTLIDE
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| A0A5A7UB25 Putative gag-pol polyprotein | 1.1e-196 | 87.83 | Show/hide |
Query: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKI
MASTRFEVSKFNG+GDFALWRKKIRAILVQHKVAKILDE RLP NITESEKRDM+EMAY TILLYLSDEVLRLVDEATTT ELWKKLESLYLTKSL NKI
Subjt: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKI
Query: YIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGR
YIKEKFFGYKMDQSK LEENL+EFQKIVVDLNNIGEKMSDENQA+ILLNSLPE YR VKAAIKYG DSLTMSIVLDALKTRNLEIKKERKDGELLMARGR
Subjt: YIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGR
Query: SDKKNWKGKEKSSRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHMT
S+KK+WKGKE+S R S ++RKCFLCHK GHFKKNCPLNKSREASTSEANVTDGYNSA+ITDG DS ETGYESAEVLMVSHRDIQDAWIMDSGCT+HMT
Subjt: SDKKNWKGKEKSSRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHMT
Query: PNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVLE
P+ DFL NFQK DGGKVLL DNGTC+VKGTG V IATHDGM+R+LTN+RYVP+LKRNLISLGELD+SG TIK E G+MKVTKGSLVKLRGTL +GLYVLE
Subjt: PNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVLE
Query: GTAVSGSATKA
GT VSGSA A
Subjt: GTAVSGSATKA
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| A0A5D3BRB2 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.6e-237 | 92.42 | Show/hide |
Query: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDE-ATTTAELWKKLESLYLTKSLSNK
MASTRFEVSKFN NGDFALWRKKIRAILVQHKVAKILDEGRLPANITE+EKRDM+EMAYSTIL+YLS EVLRLVDE TTTAELWKKLESLYLTKSL NK
Subjt: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDE-ATTTAELWKKLESLYLTKSLSNK
Query: IYIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARG
IYIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPE YR VKAAIKYGRDSLTMSIV DALKTRNL+IKKERKDGELLMARG
Subjt: IYIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARG
Query: RSDKKNWKGKEKSSRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHM
RSDKK WKGKEKSSRMNSN EARKCFLCHK GHFKKNCPLNKSREASTSEANVTDGYNSA IT GYDS ETGYESAEVLMVSHRDIQDAWIMDSGCTYHM
Subjt: RSDKKNWKGKEKSSRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHM
Query: TPNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVL
TPN DFLINFQKSDGGKVLL DNGTCEVKGTG VLIATHDGMIRMLTN+RYVPELKRNLISL ELD+S YTIK+E GIMKVTKGSLVKLRGTL N LYVL
Subjt: TPNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVL
Query: EGTAVSGSATKALKQQKQQIVDHVVTNIRIDGVQSSGKGSDISSDQSPLVSQIEATEQSEFDGVQSEQERTLIDE
EG AVS SATKALKQQKQQIVDHVVT+IRIDGVQSSGKGSDI SDQSPLVSQIEATE+SEFDGVQS+QERTLI+E
Subjt: EGTAVSGSATKALKQQKQQIVDHVVTNIRIDGVQSSGKGSDISSDQSPLVSQIEATEQSEFDGVQSEQERTLIDE
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| A0A5D3BRV3 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.1e-217 | 88.1 | Show/hide |
Query: GNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKIYIKEKFFGYKMD
GNGDFALWRKKIRAILVQHKVAKILDEGR+PANITESEKRDM+EMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSL NKIYIKEKFFGYK+D
Subjt: GNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKIYIKEKFFGYKMD
Query: QSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGRSDKKNWKGKEKS
QSKSLEENLNEFQKIVVDLNNIGEKMSDENQ IILLNSLP+ YR VKAAIKYG+DSLTMSIVLDALKTRNLEIKKERKDGELLMARGRSDKKNWKGKEKS
Subjt: QSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGRSDKKNWKGKEKS
Query: SRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHMTPNWDFLINFQKS
SRMNSN EARK FLCHK GHFKKNCPLNKSREA TSE NVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWI DSGCTYHMTPN DFLINFQKS
Subjt: SRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHMTPNWDFLINFQKS
Query: DGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVLEGTAVSGSATKAL
DGGKVLL DNGTCEVKGTG VLIATHDGMIRMLTN+RYVPELKRNLISLG+LD+SGYTIKFE GIMKVTKGSLVKLRGTL NGLYVLEGTAV
Subjt: DGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVLEGTAVSGSATKAL
Query: KQQKQQIVDHVVTNIRIDGVQSSGKGSDISSDQSPLVSQIEATEQSEFDGVQSEQERTLIDE
SGKGSDISSDQSPLVSQIEATEQSEFDGVQS+ ERTLIDE
Subjt: KQQKQQIVDHVVTNIRIDGVQSSGKGSDISSDQSPLVSQIEATEQSEFDGVQSEQERTLIDE
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| A0A5D3DNU1 Putative gag-pol polyprotein | 3.5e-200 | 88.81 | Show/hide |
Query: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKI
MASTRFEVSKFNG+GDFALWRKKIRAILVQHKVAKILDE RLP NITESEKRDM+EMAYSTILLYLSDEVLRLVDEATTT ELWKKLESLYLTKSL NKI
Subjt: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKI
Query: YIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGR
YIKEKFFGYKMDQSKSLEENL+EFQKIVVDLNNIGEKMSDENQA+ILLNSLPE YR VKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGR
Subjt: YIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGR
Query: SDKKNWKGKEKSSRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHMT
S+KK+WKGKE+S R S ++RKCFLCHK GHFKKNCPLNKSREASTSEANVTDGYNSA+ITDGYDS ETGYESAEVLMVSHRDIQDAWIMDSGCT+HMT
Subjt: SDKKNWKGKEKSSRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHMT
Query: PNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVLE
P+ DFL NFQK DGGKVLL DNGTC+VKGTG V IATHDGM+R+LTN+RYVP+LKRNLISLGELD+SG TIK E G+MKVTKGSLVKLRGTL +GLYVLE
Subjt: PNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVLE
Query: GTAVSGSATKA
GT VSGSA A
Subjt: GTAVSGSATKA
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| A0A5D3DNU1 Putative gag-pol polyprotein | 7.7e-06 | 59.68 | Show/hide |
Query: KQQKQQIVDHVVTNIRIDGVQSSGKGSDISSDQSPLVSQIEATEQSEFDGVQSEQERTLIDE
+QQKQQ DHVVT +RI S + S +Q PLVS+IE T+QSEFDG+QS+QER LIDE
Subjt: KQQKQQIVDHVVTNIRIDGVQSSGKGSDISSDQSPLVSQIEATEQSEFDGVQSEQERTLIDE
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| A0A5D3DNU1 Putative gag-pol polyprotein | 1.0e-199 | 88.56 | Show/hide |
Query: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKI
MASTRFEVSKFNG+GDF+LWRKKIRAILVQHKVAKILDE RLP NITESEKRDM+EMAYSTILLYLSDEVLRLVDEATTT ELWKKLESLYLTKSL NKI
Subjt: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKI
Query: YIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGR
YIKEKFFGYKMDQSKSLEENL+EFQKIVVDLNNIGEKMSDENQA+ILLNSLPE YR VKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGR
Subjt: YIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGR
Query: SDKKNWKGKEKSSRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHMT
S+KK+WKGKE+S R S ++RKCFLCHK GHFKKNCPLNKSREASTSEANVTDGYNSA+ITDGYDS ETGYESAEVLMVSHRDIQDAWIMDSGCT+HMT
Subjt: SDKKNWKGKEKSSRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMDSGCTYHMT
Query: PNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVLE
P+ DFL NFQK DGGKVLL DNGTC+VKGTG V IATHDGM+R+LTN+RYVP+LKRNLISLGELD+SG TIK E G+MKVTKGSLVKLRGTL +GLYVLE
Subjt: PNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTLSNGLYVLE
Query: GTAVSGSATKA
GT VSGSA A
Subjt: GTAVSGSATKA
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 8.2e-21 | 23.99 | Show/hide |
Query: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKI
M + + F+G +A+W+ +IRA+L + V K++D G +P + +S K+ A STI+ YLSD L T ++ + L+++Y KSL++++
Subjt: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKI
Query: YIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIK-YGRDSLTMSIVLDALKTRNLEIKKERKD--GELLMA
++++ K+ SL + + F +++ +L G K+ + ++ LL +LP Y G+ AI+ ++LT++ V + L + ++IK + D +++ A
Subjt: YIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIK-YGRDSLTMSIVLDALKTRNLEIKKERKD--GELLMA
Query: RGRSDKKNWKG--------KEKSSRMNSNREARKCFLC-HKGHFKKNC-----PLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRD
++ +K K K +++ KC C +GH KK+C LN + + + + A + V V++
Subjt: RGRSDKKNWKG--------KEKSSRMNSNREARKCFLC-HKGHFKKNC-----PLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRD
Query: IQD--AWIMDSGCTYHMTPNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRM-------LTNIRYVPELKRNLISLGELDKSGYTIKFEI
+ D +++DSG + D LIN + V + V G + AT G++R+ L ++ + E NL+S+ L ++G +I+F+
Subjt: IQD--AWIMDSGCTYHMTPNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRM-------LTNIRYVPELKRNLISLGELDKSGYTIKFEI
Query: GIMKVTKGSL--VKLRGTLSN
+ ++K L VK G L+N
Subjt: GIMKVTKGSL--VKLRGTLSN
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.8e-53 | 29.78 | Show/hide |
Query: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILD-EGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNK
M+ ++EV+KFNG+ F+ W++++R +L+Q + K+LD + + P + + D++E A S I L+LSD+V+ + + T +W +LESLY++K+L+NK
Subjt: MASTRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILD-EGRLPANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNK
Query: IYIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARG
+Y+K++ + M + + +LN F ++ L N+G K+ +E++AI+LLNSLP Y + I +G+ ++ + V AL KK G+ L+ G
Subjt: IYIKEKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARG
Query: R-------SDKKNWKGKEKSSRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMD
R S+ G S+ S R C+ C++ GHFK++CP + + TS D N+A + D+ E M + W++D
Subjt: R-------SDKKNWKGKEKSSRMNSNREARKCFLCHK-GHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEVLMVSHRDIQDAWIMD
Query: SGCTYHMTPNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTL
+ ++H TP D + D G V + + ++ G G + I T+ G +L ++R+VP+L+ NLIS LD+ GY F ++TKGSLV +G
Subjt: SGCTYHMTPNWDFLINFQKSDGGKVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGELDKSGYTIKFEIGIMKVTKGSLVKLRGTL
Query: SNGLYVLEGTAVSGSATKALKQQKQQIVDHVVTNIRIDGVQSSGKGSDIS
LY G A + + + ++ G+Q K S IS
Subjt: SNGLYVLEGTAVSGSATKALKQQKQQIVDHVVTNIRIDGVQSSGKGSDIS
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.0e-10 | 22.47 | Show/hide |
Query: DFALWRKKIRAILVQHKVAKILDEGRL--PANI-TESEKR---------DMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKIYIK
++ +W +++ A+ +++A LD PA I T++ R +++ YS +L +S V V ATT A++W+ L +Y S + ++
Subjt: DFALWRKKIRAILVQHKVAKILDEGRL--PANI-TESEKR---------DMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKIYIK
Query: EKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGV--KAAIKYGRDSLT---------------------MSIVLDALKT
+ + +K++++ + L +G+ M + Q +L +LPE Y+ V + A K +LT + I +A+
Subjt: EKFFGYKMDQSKSLEENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPEIYRGV--KAAIKYGRDSLT---------------------MSIVLDALKT
Query: RNLEIKKERKDGELLMARGRSDKKN-------WKGKEKSSRMNSNRE---ARKCFLCH-KGHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTET
RN +G R D +N W+ + N+N+ KC +C +GH K C + + S+ + S T
Subjt: RNLEIKKERKDGELLMARGRSDKKN-------WKGKEKSSRMNSNRE---ARKCFLCH-KGHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTET
Query: GYESAEVLMVSHRDIQDAWIMDSGCTYHMTPNWDFLINFQKSDGG-KVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGEL-DKSG
++ L + + W++DSG T+H+T +++ L Q GG V+++D T + TG ++T + L NI YVP + +NLIS+ L + +G
Subjt: GYESAEVLMVSHRDIQDAWIMDSGCTYHMTPNWDFLINFQKSDGG-KVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGEL-DKSG
Query: YTIKF
+++F
Subjt: YTIKF
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 5.3e-12 | 22.68 | Show/hide |
Query: DFALWRKKIRAILVQHKVAKILDEGRLP-------------ANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKIYI
++ +W +++ A+ +++A LD G P N + R +++ YS IL +S V V ATT A++W+ L +Y S + +
Subjt: DFALWRKKIRAILVQHKVAKILDEGRLP-------------ANITESEKRDMNEMAYSTILLYLSDEVLRLVDEATTTAELWKKLESLYLTKSLSNKIYI
Query: K-------EKFFGYKMDQSKSLE---ENLNEFQKIVVD----------LNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRN
+ G MD + +E ENL + K V+D L I E++ + ++ LNS + +T ++V N
Subjt: K-------EKFFGYKMDQSKSLE---ENLNEFQKIVVD----------LNNIGEKMSDENQAIILLNSLPEIYRGVKAAIKYGRDSLTMSIVLDALKTRN
Query: LEIKKERKDGELLMARGRSDKKN-WKGKEKSSRMNSNREAR----KCFLCH-KGHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEV
+ + G+ +++ N W+ SR + NR+ + +C +C +GH K CP +++T++ T + T ++
Subjt: LEIKKERKDGELLMARGRSDKKN-WKGKEKSSRMNSNREAR----KCFLCH-KGHFKKNCPLNKSREASTSEANVTDGYNSAKITDGYDSTETGYESAEV
Query: LMVSHRDIQDAWIMDSGCTYHMTPNWDFLINFQKSDGG-KVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGEL
L V+ + W++DSG T+H+T +++ L Q GG V+++D T + TG + T + L + YVP + +NLIS+ L
Subjt: LMVSHRDIQDAWIMDSGCTYHMTPNWDFLINFQKSDGG-KVLLSDNGTCEVKGTGLVLIATHDGMIRMLTNIRYVPELKRNLISLGEL
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