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Pay0014759 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0014759
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionDNA primase
Genome locationchr03:15322249..15326446
RNA-Seq ExpressionPay0014759
SyntenyPay0014759
Gene Ontology termsGO:0006269 - DNA replication, synthesis of RNA primer (biological process)
GO:0006865 - amino acid transport (biological process)
GO:0009734 - auxin-activated signaling pathway (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0005658 - alpha DNA polymerase:primase complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003896 - DNA primase activity (molecular function)
GO:0015293 - symporter activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR002755 - DNA primase, small subunit
IPR014052 - DNA primase, small subunit, eukaryotic/archaeal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034894.1 amino acid permease 3-like [Cucumis melo var. makuwa]2.5e-65100Show/hide
Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETANGKIGGSLTGISIGTVTQT
        MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETANGKIGGSLTGISIGTVTQT
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETANGKIGGSLTGISIGTVTQT

Query:  QKVWRSFQALGDIAFAYSYSIILIEIQ
        QKVWRSFQALGDIAFAYSYSIILIEIQ
Subjt:  QKVWRSFQALGDIAFAYSYSIILIEIQ

KAA0039338.1 DNA primase, small subunit [Cucumis melo var. makuwa]1.3e-3797.5Show/hide
Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
        MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET

XP_022925368.1 DNA primase small subunit [Cucurbita moschata]1.1e-3696.25Show/hide
Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
        MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPE CDEFDPTTVPTVAQLLEELNAADMEVDSET
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET

XP_022973496.1 DNA primase small subunit [Cucurbita maxima]1.1e-3696.25Show/hide
Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
        MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPE CDEFDPTTVPTVAQLLEELNAADMEVDSET
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET

XP_023522158.1 DNA primase small subunit-like [Cucurbita pepo subsp. pepo]1.3e-3797.5Show/hide
Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
        MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET

TrEMBL top hitse value%identityAlignment
A0A0A0KUP7 DNA primase1.2e-3696.2Show/hide
Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSE
        MRR+VEEIVFSFTYPRL+ EVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSE
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSE

A0A5A7SUG1 Amino acid permease 3-like1.2e-65100Show/hide
Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETANGKIGGSLTGISIGTVTQT
        MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETANGKIGGSLTGISIGTVTQT
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETANGKIGGSLTGISIGTVTQT

Query:  QKVWRSFQALGDIAFAYSYSIILIEIQ
        QKVWRSFQALGDIAFAYSYSIILIEIQ
Subjt:  QKVWRSFQALGDIAFAYSYSIILIEIQ

A0A5A7T8Y3 DNA primase6.2e-3897.5Show/hide
Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
        MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET

A0A6J1EEZ9 DNA primase5.3e-3796.25Show/hide
Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
        MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPE CDEFDPTTVPTVAQLLEELNAADMEVDSET
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET

A0A6J1I8T4 DNA primase5.3e-3796.25Show/hide
Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
        MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPE CDEFDPTTVPTVAQLLEELNAADMEVDSET
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET

SwissProt top hitse value%identityAlignment
O14215 DNA primase small subunit2.4e-1860Show/hide
Query:  EEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELN
        ++IV ++ YPRL++EV++H+NHLLK+PFCVHP T R+CVPID E  D F+P  VPTV  LL+EL+
Subjt:  EEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELN

P49642 DNA primase small subunit6.5e-1650Show/hide
Query:  EIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETAN
        EI+  + +PRL++ V+K +NHLLK+PF VHPKTGRI VPID +  D+FDP TVPT++ +  EL+A     + +  N
Subjt:  EIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETAN

Q24317 DNA primase small subunit3.1e-1854.79Show/hide
Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAAD
        ++  V EI     YPRL++ VT+  NHLLKAPFC+HP TG++CVP       +FDPTTVPT+ QLL E+NA D
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAAD

Q25998 DNA primase small subunit4.5e-1752.86Show/hide
Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELN
        M  +V+EIVF FTYPRL++ V+K +NHLLK+PFC+H  TGR+CVP+D ++ + F+P +VPT+  L E+ +
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELN

Q7KQM1 DNA primase small subunit4.5e-1752.86Show/hide
Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELN
        M  +V+EIVF FTYPRL++ V+K +NHLLK+PFC+H  TGR+CVP+D ++ + F+P +VPT+  L E+ +
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELN

Arabidopsis top hitse value%identityAlignment
AT1G44100.1 amino acid permease 52.2e-1158.62Show/hide
Query:  VDSETANGKIGGSLTGISI------GTVTQTQKVWRSFQALGDIAFAYSYSIILIEIQ
        V     N +I GSLTG+++      GTVT +QK+WR+FQ+LG+IAFAYSYS+ILIEIQ
Subjt:  VDSETANGKIGGSLTGISI------GTVTQTQKVWRSFQALGDIAFAYSYSIILIEIQ

AT1G77380.1 amino acid permease 31.3e-1686.96Show/hide
Query:  NGKIGGSLTGISIGTVTQTQKVWRSFQALGDIAFAYSYSIILIEIQ
        NGK+ GSLTGISIG VT+TQK+WR+FQALGDIAFAYSYSIILIEIQ
Subjt:  NGKIGGSLTGISIGTVTQTQKVWRSFQALGDIAFAYSYSIILIEIQ

AT5G09220.1 amino acid permease 21.3e-1685.11Show/hide
Query:  ANGKIGGSLTGISIGTVTQTQKVWRSFQALGDIAFAYSYSIILIEIQ
        ANG   GSLTGISIGTVTQTQK+WR+FQALGDIAFAYSYS++LIEIQ
Subjt:  ANGKIGGSLTGISIGTVTQTQKVWRSFQALGDIAFAYSYSIILIEIQ

AT5G41880.1 DNA primases;DNA primases1.1e-2964.04Show/hide
Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAAD--MEVDSETANGKIGG
        +R  VEEIVF+FTYPR++LEV+K MNHLLKAPFCVHPKTGR+CVPIDP +CDEFDP  VPT++QL+EE+N+    M+VD + ++  + G
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAAD--MEVDSETANGKIGG

AT5G63850.1 amino acid permease 42.3e-1682.98Show/hide
Query:  ANGKIGGSLTGISIGTVTQTQKVWRSFQALGDIAFAYSYSIILIEIQ
        ANG + GSLTGISIG VTQTQK+WR+FQALGDIAFAYSYS++LIEIQ
Subjt:  ANGKIGGSLTGISIGTVTQTQKVWRSFQALGDIAFAYSYSIILIEIQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTAGGTATGTTGAAGAGATTGTTTTCTCTTTTACCTACCCTAGGCTTAATTTGGAGGTTACTAAACACATGAACCATCTGCTAAAAGCACCATTCTGTGTTCATCC
CAAAACAGGTCGTATCTGTGTCCCAATAGACCCTGAACACTGTGATGAGTTTGATCCTACTACTGTGCCAACTGTTGCCCAGCTCCTAGAAGAACTTAATGCAGCAGACA
TGGAAGTAGATAGTGAGACTGCAAATGGAAAAATTGGAGGGAGCTTGACTGGAATTAGCATAGGAACTGTCACTCAAACACAAAAAGTATGGAGGAGCTTCCAAGCTCTT
GGAGACATTGCTTTTGCCTACTCATACTCGATTATCCTCATTGAAATTCAGATATTACATCGAGATTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCGTAGGTATGTTGAAGAGATTGTTTTCTCTTTTACCTACCCTAGGCTTAATTTGGAGGTTACTAAACACATGAACCATCTGCTAAAAGCACCATTCTGTGTTCATCC
CAAAACAGGTCGTATCTGTGTCCCAATAGACCCTGAACACTGTGATGAGTTTGATCCTACTACTGTGCCAACTGTTGCCCAGCTCCTAGAAGAACTTAATGCAGCAGACA
TGGAAGTAGATAGTGAGACTGCAAATGGAAAAATTGGAGGGAGCTTGACTGGAATTAGCATAGGAACTGTCACTCAAACACAAAAAGTATGGAGGAGCTTCCAAGCTCTT
GGAGACATTGCTTTTGCCTACTCATACTCGATTATCCTCATTGAAATTCAGATATTACATCGAGATTCATAG
Protein sequenceShow/hide protein sequence
MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETANGKIGGSLTGISIGTVTQTQKVWRSFQAL
GDIAFAYSYSIILIEIQILHRDS