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Pay0015012 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0015012
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionReplication protein A subunit
Genome locationchr10:24068152..24070281
RNA-Seq ExpressionPay0015012
SyntenyPay0015012
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006268 - DNA unwinding involved in DNA replication (biological process)
GO:0006289 - nucleotide-excision repair (biological process)
GO:0007004 - telomere maintenance via telomerase (biological process)
GO:0051321 - meiotic cell cycle (biological process)
GO:0005662 - DNA replication factor A complex (cellular component)
GO:0003684 - damaged DNA binding (molecular function)
GO:0043047 - single-stranded telomeric DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065433.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]8.9e-2284.72Show/hide
Query:  PLTRTNQLYSVTPSSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYMVCEFSFAQNSDLCFVVM
        PL R  +  S T   ARTAGRIS ILSNPSPDSPSDVPNVVVQVIDLKAMGNRYMVCEFSFAQNSDLCFVVM
Subjt:  PLTRTNQLYSVTPSSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYMVCEFSFAQNSDLCFVVM
XP_008453278.1 PREDICTED: replication protein A 70 kDa DNA-binding subunit B [Cucumis melo]2.5e-0883.33Show/hide
Query:  SSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYM
        +SA TAG IS ILSNPSPDSP+DVP+VVVQVIDLKA GNRYM
Subjt:  SSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYM
XP_011648462.1 replication protein A 70 kDa DNA-binding subunit B [Cucumis sativus]1.5e-0883.33Show/hide
Query:  SSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYM
        +SA TAG IS +LSNPSPDSPSDVP+VVVQVIDLKA GNRYM
Subjt:  SSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYM
XP_023530839.1 replication protein A 70 kDa DNA-binding subunit B [Cucurbita pepo subsp. pepo]8.9e-0671.43Show/hide
Query:  SSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYM
        ++A T G IS IL+NPSPDS SDVP VV+QV+DLKA GNRYM
Subjt:  SSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYM
XP_038878718.1 replication protein A 70 kDa DNA-binding subunit B-like [Benincasa hispida]1.9e-0883.33Show/hide
Query:  SSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYM
        + A T G ISNILSNPSPDSPSDVP+VVVQVIDLKA GNRYM
Subjt:  SSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYM
TrEMBL top hitse value%identityAlignment
A0A0A0LSG2 Replication protein A subunit7.1e-0983.33Show/hide
Query:  SSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYM
        +SA TAG IS +LSNPSPDSPSDVP+VVVQVIDLKA GNRYM
Subjt:  SSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYM
A0A1S3BX02 Replication protein A subunit1.2e-0883.33Show/hide
Query:  SSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYM
        +SA TAG IS ILSNPSPDSP+DVP+VVVQVIDLKA GNRYM
Subjt:  SSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYM
A0A5A7UTE7 Replication protein A subunit1.2e-0883.33Show/hide
Query:  SSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYM
        +SA TAG IS ILSNPSPDSP+DVP+VVVQVIDLKA GNRYM
Subjt:  SSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYM
A0A5A7VB78 NBS-LRR type resistance protein4.3e-2284.72Show/hide
Query:  PLTRTNQLYSVTPSSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYMVCEFSFAQNSDLCFVVM
        PL R  +  S T   ARTAGRIS ILSNPSPDSPSDVPNVVVQVIDLKAMGNRYMVCEFSFAQNSDLCFVVM
Subjt:  PLTRTNQLYSVTPSSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYMVCEFSFAQNSDLCFVVM
A0A6J1I6K6 Replication protein A subunit4.3e-0671.43Show/hide
Query:  SSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYM
        ++A T G IS IL+NPSPDS SDVP VV+QV+DLKA GNRYM
Subjt:  SSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYM
SwissProt top hitse value%identityAlignment
Q9FME0 Replication protein A 70 kDa DNA-binding subunit D3.0e-0457.78Show/hide
Query:  SVTPSSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRY
        SVTP +      IS +LSNPS DS SD   +VVQV+DLK +GNRY
Subjt:  SVTPSSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRY
Arabidopsis top hitse value%identityAlignment
AT5G61000.1 Replication factor-A protein 1-related2.1e-0557.78Show/hide
Query:  SVTPSSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRY
        SVTP +      IS +LSNPS DS SD   +VVQV+DLK +GNRY
Subjt:  SVTPSSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGCTGATTGTGACCTTCGACGACGATCGACGTTTGATGGTGACCCACTGACGCGAACAAATCAGCTATACTCGGTGACTCCATCAAGCGCACGAACTGCTGGCAG
AATATCAAACATTTTGTCCAATCCATCACCGGACTCCCCCTCCGATGTCCCCAACGTTGTGGTTCAGGTCATTGATCTCAAGGCGATGGGAAATCGCTATATGGTATGTG
AGTTTTCTTTTGCTCAGAACTCCGATTTATGCTTTGTTGTCATGTATGTATGCAATAGGGCTACACTTGTGACCATGAGGCTTGGAGCAGATGTTCTTGTGTTTTTCCAT
TGCAATGGAAGTGATCAAAGAGGGAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGGCTGATTGTGACCTTCGACGACGATCGACGTTTGATGGTGACCCACTGACGCGAACAAATCAGCTATACTCGGTGACTCCATCAAGCGCACGAACTGCTGGCAG
AATATCAAACATTTTGTCCAATCCATCACCGGACTCCCCCTCCGATGTCCCCAACGTTGTGGTTCAGGTCATTGATCTCAAGGCGATGGGAAATCGCTATATGGTATGTG
AGTTTTCTTTTGCTCAGAACTCCGATTTATGCTTTGTTGTCATGTATGTATGCAATAGGGCTACACTTGTGACCATGAGGCTTGGAGCAGATGTTCTTGTGTTTTTCCAT
TGCAATGGAAGTGATCAAAGAGGGAGTTAGTAGGAAAGTATTGTTCTTATCGATATAACATAATATTTAGATGGGGCGGTTAGAATTTGATTTGTTTGTTTTGTTCAACT
TATGTGATTAATTTGTAGTTTTAATCAATTTCTAGTCTTCATTATGGCAACAATCTCATGTGTTGCTCGATTTCAAGTTCTTTTTCTTCACATTGTATATCTTTGAATTT
CTCTGTTTTTTTTTTACATTTCTTTGATTCGGATTTATTTTCATTTGTTTTCTTCATTTAGCACCGCATAGGC
Protein sequenceShow/hide protein sequence
MTADCDLRRRSTFDGDPLTRTNQLYSVTPSSARTAGRISNILSNPSPDSPSDVPNVVVQVIDLKAMGNRYMVCEFSFAQNSDLCFVVMYVCNRATLVTMRLGADVLVFFH
CNGSDQRGS