CuGenDBv2

Gene ID	Pay0015185
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr05:15787878..15788663
RNA-Seq Expression	Pay0015185
Synteny	Pay0015185
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037745.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.9e-124

86.21

Show/hide

Query:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL
        MEKSEIARPISTILDGSNYITWANQ+KSFLIGRKLWRIVTGDI                     DS NHQIITWLSNTSIP IHTQFDAFE+AKELW+FL
Subjt:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL

Query:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN
        STRFK VGLAHYYQLHN+L NLNQEAGQSVNEYLAVLQPIWTQLDQA ISKDHLRLIKVLMGLRPEYESV+AALLHRSPLPSLDAAIQEILFEE+RLGIN
Subjt:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN

Query:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP
        LSKHSD VLASTYSPPGASSTFCKNCKLTGHKFI+CPKIECRYCHK GHIL+NCPIKPPRP
Subjt:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP

KAA0063009.1 Integrase, catalytic core [Cucumis melo var. makuwa]

1.0e-125

87.74

Show/hide

Query:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL
        MEKSEIARPISTILDGSNYITWANQ+KSFLIGRKLWRIVTGDI                     DS NHQIITWLSNTSI  IHTQFDAFESA+ELWDFL
Subjt:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL

Query:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN
        STRFK VGLAHYYQLHNNL NLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGL PEYESV+AALLHRSPLPSLDAAIQEILFEEKRLGIN
Subjt:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN

Query:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP
        LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHK GHIL+NCPIKPPRP
Subjt:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP

KAA0064060.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.0e-125

86.97

Show/hide

Query:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL
        MEKSEIARPISTILDGSNYITWANQ+KSFLIGRKLWRIVTGDI                     DS NHQIITWLSNTSIP IHTQFDAFESAKELWDFL
Subjt:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL

Query:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN
        STRFK VGLAHYYQLHNNL NLNQEAGQSVNEYL VLQPIWTQLDQA ISKDHLRLIKVLMGLRPEYESV+AALLHRSPLPSLDAAIQEILFEEKRLGIN
Subjt:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN

Query:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP
        LS +SDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHK GHIL+NCPIKPP+P
Subjt:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP

TYK19656.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.9e-124

86.21

Show/hide

Query:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL
        MEKSEIARPISTILDGSNYITWANQ+KSFLIGRKLWRIVTGDI                     DS NHQIITWLSNTSIP IHTQFDAFE+AKELW+FL
Subjt:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL

Query:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN
        STRFK VGLAHYYQLHN+L NLNQEAGQSVNEYLAVLQPIWTQLDQA ISKDHLRLIKVLMGLRPEYESV+AALLHRSPLPSLDAAIQEILFEE+RLGIN
Subjt:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN

Query:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP
        LSKHSD VLASTYSPPGASSTFCKNCKLTGHKFI+CPKIECRYCHK GHIL+NCPIKPPRP
Subjt:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP

TYK26360.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.9e-124

86.21

Show/hide

Query:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL
        MEKSEIARPISTILDGSNYITWANQ+KSFLIGRKLWRIVTGDI                     DS NHQIITWLSNTSIP IHTQFDAFE+AKELW+FL
Subjt:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL

Query:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN
        STRFK VGLAHYYQLHN+L NLNQEAGQSVNEYLAVLQPIWTQLDQA ISKDHLRLIKVLMGLRPEYESV+AALLHRSPLPSLDAAIQEILFEE+RLGIN
Subjt:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN

Query:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP
        LSKHSD VLASTYSPPGASSTFCKNCKLTGHKFI+CPKIECRYCHK GHIL+NCPIKPPRP
Subjt:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T8F2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.3e-125

86.21

Show/hide

Query:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL
        MEKSEIARPISTILDGSNYITWANQ+KSFLIGRKLWRIVTGDI                     DS NHQIITWLSNTSIP IHTQFDAFE+AKELW+FL
Subjt:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL

Query:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN
        STRFK VGLAHYYQLHN+L NLNQEAGQSVNEYLAVLQPIWTQLDQA ISKDHLRLIKVLMGLRPEYESV+AALLHRSPLPSLDAAIQEILFEE+RLGIN
Subjt:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN

Query:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP
        LSKHSD VLASTYSPPGASSTFCKNCKLTGHKFI+CPKIECRYCHK GHIL+NCPIKPPRP
Subjt:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP

A0A5A7V9Z8 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-125

86.97

Show/hide

Query:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL
        MEKSEIARPISTILDGSNYITWANQ+KSFLIGRKLWRIVTGDI                     DS NHQIITWLSNTSIP IHTQFDAFESAKELWDFL
Subjt:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL

Query:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN
        STRFK VGLAHYYQLHNNL NLNQEAGQSVNEYL VLQPIWTQLDQA ISKDHLRLIKVLMGLRPEYESV+AALLHRSPLPSLDAAIQEILFEEKRLGIN
Subjt:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN

Query:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP
        LS +SDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHK GHIL+NCPIKPP+P
Subjt:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP

A0A5A7VBM6 Integrase, catalytic core

4.9e-126

87.74

Show/hide

Query:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL
        MEKSEIARPISTILDGSNYITWANQ+KSFLIGRKLWRIVTGDI                     DS NHQIITWLSNTSI  IHTQFDAFESA+ELWDFL
Subjt:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL

Query:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN
        STRFK VGLAHYYQLHNNL NLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGL PEYESV+AALLHRSPLPSLDAAIQEILFEEKRLGIN
Subjt:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN

Query:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP
        LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHK GHIL+NCPIKPPRP
Subjt:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP

A0A5A7VIT8 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.3e-125

86.21

Show/hide

Query:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL
        MEKSEIARPISTILDGSNYITWANQ+KSFLIGRKLWRIVTGDI                     DS NHQIITWLSNTSIP IHTQFDAFE+AKELW+FL
Subjt:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL

Query:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN
        STRFK VGLAHYYQLHN+L NLNQEAGQSVNEYLAVLQPIWTQLDQA ISKDHLRLIKVLMGLRPEYESV+AALLHRSPLPSLDAAIQEILFEE+RLGIN
Subjt:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN

Query:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP
        LSKHSD VLASTYSPPGASSTFCKNCKLTGHKFI+CPKIECRYCHK GHIL+NCPIKPPRP
Subjt:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP

A0A5D3D7V8 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.3e-125

86.21

Show/hide

Query:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL
        MEKSEIARPISTILDGSNYITWANQ+KSFLIGRKLWRIVTGDI                     DS NHQIITWLSNTSIP IHTQFDAFE+AKELW+FL
Subjt:  MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDI---------------------DSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFL

Query:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN
        STRFK VGLAHYYQLHN+L NLNQEAGQSVNEYLAVLQPIWTQLDQA ISKDHLRLIKVLMGLRPEYESV+AALLHRSPLPSLDAAIQEILFEE+RLGIN
Subjt:  STRFKFVGLAHYYQLHNNLANLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGIN

Query:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP
        LSKHSD VLASTYSPPGASSTFCKNCKLTGHKFI+CPKIECRYCHK GHIL+NCPIKPPRP
Subjt:  LSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCPIKPPRP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAGAAAAGTGAAATTGCTCGTCCAATTAGCACAATTCTTGATGGTTCTAATTATATTACATGGGCCAATCAAATAAAAAGTTTCTTAATTGGACGAAAATTA
TGGCGTATTGTCACAGGTGATATTGACAGCATAAATCATCAGATTATCACCTGGCTTAGTAACACATCAATTCCTACTATCCATACACAATTTGATGCTTTTGAA
AGTGCTAAGGAGTTATGGGATTTTCTGTCTACACGATTTAAGTTCGTCGGATTAGCGCATTACTATCAATTGCACAATAATCTTGCTAATCTTAATCAAGAAGCT
GGACAATCAGTCAATGAGTATCTAGCCGTGCTTCAACCTATCTGGACTCAACTTGATCAAGCTAAAATCAGTAAAGATCATCTTCGTCTTATTAAAGTCCTTATG
GGACTTCGTCCAGAATATGAATCTGTCAAGGCTGCCTTGTTGCACCGCAGTCCCTTGCCCTCATTGGATGCTGCTATCCAAGAAATATTATTTGAAGAAAAACGT
CTTGGCATCAATCTCTCTAAACATTCTGATGTTGTTCTTGCCAGCACTTATTCACCACCTGGAGCATCAAGCACATTTTGTAAGAATTGTAAGCTCACTGGTCAT
AAATTTATTGATTGTCCTAAAATAGAATGCAGGTACTGCCATAAACGAGGTCATATTCTGAATAATTGTCCCATAAAACCACCTCGACCTTGA

mRNA sequence

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Protein sequence

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MEKSEIARPISTILDGSNYITWANQIKSFLIGRKLWRIVTGDIDSINHQIITWLSNTSIPTIHTQFDAFESAKELWDFLSTRFKFVGLAHYYQLHNNLANLNQEA
GQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGH
KFIDCPKIECRYCHKRGHILNNCPIKPPRP

Pay0015185 (gene) of Melon (Payzawat) v1 genome