CuGenDBv2

Gene ID	Pay0015217
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	50S ribosomal protein L20, chloroplastic
Genome location	Contig00288_ERROPOS136135:37014..37421
RNA-Seq Expression	Pay0015217
Synteny	Pay0015217
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR035566 - Ribosomal protein L20, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

YP_004841806.1 ribosomal protein L20 [Cucumis melo subsp. melo]

7.4e-65

100

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
        AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE

YP_009317409.1 ribosomal protein L20 [Coccinia grandis]

1.0e-53

100

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

YP_009439914.1 ribosomal protein L20 [Gynostemma caulopterum]

7.4e-57

91.11

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRG+ KRNFR LWIARINAVIR NKV YSYSRFIHNLYK+QLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
        AILNRNCLYM+SNEI K +D KESSGM KMEFSGE
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE

YP_009468884.1 ribosomal protein L20 [Gynostemma compressum]

8.2e-56

89.63

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRL RTITQQKIRALASAY+DRG+ KRNFR LWIARINAVIR NKV YSYSRFIHNLYK+QLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
        AILNRNCLYM+SNEI K +D KESSGM KMEFSGE
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE

YP_009752182.1 ribosomal protein L20 [Linnaeosicyos amara]

2.5e-57

93.33

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDR RQKRNFR+LWI RINAVIR NKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
        AILNRNCLYMISNEI   ED +ESSGMLKMEFSGE
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU28 50S ribosomal protein L20, chloroplastic

3.6e-65

100

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
        AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE

A0A249RY24 50S ribosomal protein L20, chloroplastic

3.6e-65

100

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
        AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE

A0A249RZ58 50S ribosomal protein L20, chloroplastic

3.6e-65

100

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
        AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE

A0A249RZK5 50S ribosomal protein L20, chloroplastic

3.6e-65

100

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
        AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE

A0A286NG26 50S ribosomal protein L20, chloroplastic

3.6e-65

100

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
        AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE

SwissProt top hits

e value

%identity

Alignment

Q33C09 50S ribosomal protein L20, chloroplastic

4.1e-50

83.59

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+LWI RINAVIR   V YSYSR IH+LYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGML
        AI NRNCLYMISNEIIK  D KES+ ++
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGML

Q3C1K6 50S ribosomal protein L20, chloroplastic

4.1e-50

83.59

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+LWI RINAVIR   V YSYSR IH+LYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGML
        AI NRNCLYMISNEIIK  D KES+ ++
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGML

Q4VZJ4 50S ribosomal protein L20, chloroplastic

5.0e-56

99.15

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSN VDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

Q68RY3 50S ribosomal protein L20, chloroplastic

1.1e-50

82.81

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRI+RGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL S++RDR RQKRNFR+LWI RINAVIR   V YSYSR IH+LYK+QLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGML
        AI N+NCLYMISNEIIK  D KES+G++
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGML

Q7FNS5 50S ribosomal protein L20, chloroplastic

4.1e-50

83.59

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+LWI RINAVIR   V YSYSR IH+LYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGML
        AI NRNCLYMISNEIIK  D KES+ ++
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGML

Arabidopsis top hits

e value

%identity

Alignment

AT1G16740.1 Ribosomal protein L20

4.7e-09

39.33

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Query:  RTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAI
        + +I   A  FRG      R   ++  +AL  +YRDR  +KR  R LWI RINA  R + V  +Y  FIH L K  + LNRK+L+++++
Subjt:  RTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAI

ATCG00660.1 ribosomal protein L20

1.1e-45

80.34

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTK+RLFASSFRGAHSRLTRT+TQQ+IRAL SA+RDRG++KR+FR+LWI RINAVI    V YSY+ FIHNLYK+QLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        A+LNR+CLY ISN+I K
Subjt:  AILNRNCLYMISNEIIK

Sequences

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CDS sequence

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ATGACTAGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCA
ACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGG
TAGACTACAGTTATAGTAGATTCATACACAATCTGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCGATATTAAATAGAAATTGTCTTTATATG
ATTTCCAATGAGATCATAAAATACGAAGATTGCAAAGAATCCAGCGGAATGCTTAAAATGGAGTTCTCTGGAGAATGA

mRNA sequence

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Protein sequence

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MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYM
ISNEIIKYEDCKESSGMLKMEFSGE

Pay0015217 (gene) of Melon (Payzawat) v1 genome