CuGenDBv2

Gene ID	Pay0015228
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ribonuclease H
Genome location	chr11:19689184..19689816
RNA-Seq Expression	Pay0015228
Synteny	Pay0015228
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037621.1 uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]

3.9e-85

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Query:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD
        MMDELCEQFKINHRNST YRPKMNGAVEA N NIKRIIEKMTITYKDWHEMLPF LHGYRTSVRTSTG TPFSLVYGME VLPLEVEIPSLRVLMEAKLD
Subjt:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD

Query:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS----------------------------PFVVKKAFLGEALLLTNMDGVELKNPV
        EAEWIRGRYE LNFVEEKRL AL H +LYQRRLMRAYNKKVHPRS                            PFVVKKAF G ALLLTNMDG+ELKNPV
Subjt:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS----------------------------PFVVKKAFLGEALLLTNMDGVELKNPV

Query:  NSDYVRRYYA
        NSDYVRRYYA
Subjt:  NSDYVRRYYA

XP_031737561.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402452 [Cucumis sativus]

4.3e-84

78.57

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Query:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD
        MMDELCE+FKINHRNST YRPKMNGAVEA N NIKRIIEKMT TYKDWHE+LPF LHGYRTSVRTSTG TPFSLVYGME VLPLEVEIPSLRVLMEAKLD
Subjt:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD

Query:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS----------------------------PFVVKKAFLGEALLLTNMDGVELKNPV
        EAEWIRGRYE LNF+EEKRL AL HG+LYQ+RLMRAYNKKVHPRS                            PFVVKKAF G ALLLTNMDGVELKNPV
Subjt:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS----------------------------PFVVKKAFLGEALLLTNMDGVELKNPV

Query:  NSDYVRRYYA
        NSDYVRRYYA
Subjt:  NSDYVRRYYA

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]

4.3e-84

78.57

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Query:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD
        MMDELCE+FKINHRNST YRPKMNGAVEA N NIKRIIEKMT TYKDWHE+LPF LHGYRTSVRTSTG TPFSLVYGME VLPLEVEIPSLRVLMEAKLD
Subjt:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD

Query:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS----------------------------PFVVKKAFLGEALLLTNMDGVELKNPV
        EAEWIRGRYE LNF+EEKRL AL HG+LYQ+RLMRAYNKKVHPRS                            PFVVKKAF G ALLLTNMDGVELKNPV
Subjt:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS----------------------------PFVVKKAFLGEALLLTNMDGVELKNPV

Query:  NSDYVRRYYA
        NSDYVRRYYA
Subjt:  NSDYVRRYYA

XP_031738857.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus]

4.3e-84

78.57

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Query:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD
        MMDELCE+FKINHRNST YRPKMNGAVEA N NIKRIIEKMT TYKDWHE+LPF LHGYRTSVRTSTG TPFSLVYGME VLPLEVEIPSLRVLMEAKLD
Subjt:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD

Query:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS----------------------------PFVVKKAFLGEALLLTNMDGVELKNPV
        EAEWIRGRYE LNF+EEKRL AL HG+LYQ+RLMRAYNKKVHPRS                            PFVVKKAF G ALLLTNMDGVELKNPV
Subjt:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS----------------------------PFVVKKAFLGEALLLTNMDGVELKNPV

Query:  NSDYVRRYYA
        NSDYVRRYYA
Subjt:  NSDYVRRYYA

XP_031742240.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116404130 [Cucumis sativus]

4.3e-84

78.57

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Query:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD
        MMDELCE+FKINHRNST YRPKMNGAVEA N NIKRIIEKMT TYKDWHE+LPF LHGYRTSVRTSTG TPFSLVYGME VLPLEVEIPSLRVLMEAKLD
Subjt:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD

Query:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS----------------------------PFVVKKAFLGEALLLTNMDGVELKNPV
        EAEWIRGRYE LNF+EEKRL AL HG+LYQ+RLMRAYNKKVHPRS                            PFVVKKAF G ALLLTNMDGVELKNPV
Subjt:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS----------------------------PFVVKKAFLGEALLLTNMDGVELKNPV

Query:  NSDYVRRYYA
        NSDYVRRYYA
Subjt:  NSDYVRRYYA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1D0 RNA-directed DNA polymerase

1.2e-79

76.19

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Query:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD
        MMDELCEQFKINHRNST Y PKMNG VE  N NIKRIIEKMTITYKDWHEMLPF LHGYRTSVRTSTG  PF LVYGMEVVLPLEVE PSLRVL+EAKLD
Subjt:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD

Query:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS----------------------------PFVVKKAFLGEALLLTNMDGVELKNPV
        EAEWIRGRYE LNFVEEK+L AL H +LYQRRLMRAYNKKVH RS                            PFVVKKAF G ALLLTNMDGVELK+PV
Subjt:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS----------------------------PFVVKKAFLGEALLLTNMDGVELKNPV

Query:  NSDYVRRYYA
        NSDYVRRYYA
Subjt:  NSDYVRRYYA

A0A5A7T7R4 Ribonuclease H

1.9e-85

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Query:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD
        MMDELCEQFKINHRNST YRPKMNGAVEA N NIKRIIEKMTITYKDWHEMLPF LHGYRTSVRTSTG TPFSLVYGME VLPLEVEIPSLRVLMEAKLD
Subjt:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD

Query:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS----------------------------PFVVKKAFLGEALLLTNMDGVELKNPV
        EAEWIRGRYE LNFVEEKRL AL H +LYQRRLMRAYNKKVHPRS                            PFVVKKAF G ALLLTNMDG+ELKNPV
Subjt:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS----------------------------PFVVKKAFLGEALLLTNMDGVELKNPV

Query:  NSDYVRRYYA
        NSDYVRRYYA
Subjt:  NSDYVRRYYA

A0A5A7V4W7 RNA-directed DNA polymerase

4.2e-77

100

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Query:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD
        MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD
Subjt:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD

Query:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS
        EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS
Subjt:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS

A0A5D3CXE2 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H

7.9e-84

78.1

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Query:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD
        MMD++CEQFKINHRNST YRPKMN AVEA N NIKRIIEKMTITYKDWHEMLPF LHGYRTSVRTSTG T FSLVYGME+VLPLEVEIPSLRVLMEAKLD
Subjt:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD

Query:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS----------------------------PFVVKKAFLGEALLLTNMDGVELKNPV
        EAEWIRGRYE LNFVEEKRL  L HG+LYQRRLMRAYNKKVHPRS                            PFVVKKAF G ALLLTNMDGVELKNP+
Subjt:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS----------------------------PFVVKKAFLGEALLLTNMDGVELKNPV

Query:  NSDYVRRYYA
        NSDYVRRYYA
Subjt:  NSDYVRRYYA

A0A5D3E1A3 RNA-directed DNA polymerase

2.6e-79

76.19

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Query:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD
        MMDELCEQFKINHRNST YRPKMNG VE  N NIKRIIEKMTITYKDWHEMLPF LHGYRTSVRTSTG  PF LVYGMEVVLPLEVE PSLRVL+EAKLD
Subjt:  MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLD

Query:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS----------------------------PFVVKKAFLGEALLLTNMDGVELKNPV
        EAEWIRGRYE LNFVEEK+L AL H +LYQRRLMRAYNKKVH RS                            PFVVKKAF   ALLLTNMD VELKNPV
Subjt:  EAEWIRGRYEHLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRS----------------------------PFVVKKAFLGEALLLTNMDGVELKNPV

Query:  NSDYVRRYYA
        NSDYVRRYYA
Subjt:  NSDYVRRYYA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATGGACGAACTTTGTGAGCAGTTCAAGATCAATCACCGAAATTCAACTCTATATCGCCCAAAGATGAATGGGGCAGTTGAGGCAACTAACAATAATATTAAAAGAAT
CATTGAGAAAATGACAATAACATACAAAGATTGGCATGAAATGCTACCGTTTACACTGCATGGATATCGCACGTCAGTTCGTACTTCAACAGGGGAAACACCATTTTCTT
TAGTTTATGGTATGGAAGTTGTTTTACCTTTGGAAGTTGAGATACCTTCATTGAGAGTTCTCATGGAAGCTAAGTTAGATGAAGCTGAATGGATACGAGGTCGTTATGAG
CACTTGAATTTTGTTGAAGAAAAACGGTTGGGAGCATTATATCATGGGAAACTTTATCAAAGAAGACTAATGCGAGCATACAATAAGAAAGTGCATCCTCGAAGTCCATT
CGTAGTGAAAAAAGCTTTTCTAGGAGAAGCTCTACTTTTGACTAATATGGATGGCGTTGAGTTAAAAAATCCTGTGAATTCAGATTATGTTCGAAGATATTATGCATGA

mRNA sequence

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Protein sequence

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MMDELCEQFKINHRNSTLYRPKMNGAVEATNNNIKRIIEKMTITYKDWHEMLPFTLHGYRTSVRTSTGETPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYE
HLNFVEEKRLGALYHGKLYQRRLMRAYNKKVHPRSPFVVKKAFLGEALLLTNMDGVELKNPVNSDYVRRYYA

Pay0015228 (gene) of Melon (Payzawat) v1 genome