CuGenDBv2

Gene ID	Pay0015342
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	DNA/RNA polymerases superfamily protein
Genome location	chr05:22694713..22696058
RNA-Seq Expression	Pay0015342
Synteny	Pay0015342
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0041108.1 reverse transcriptase [Cucumis melo var. makuwa]

2.3e-81

76.92

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Query:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ
        MLRACVLQ KG+WDTHL LMEFAYNN+YQSSIGM  +EALYGRPC+ PVCWNEVGERKLVGPELVQ+T++NIKLIREN++ AQDRQKSYADKRRRNLEFQ
Subjt:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ

Query:  IGEQVFLKLSPWRGVLHFGRKVKFNPSHVLQVQPIELKEDLSYREEVVQILDKKEQVLRNKTIQLVKVLWRHHGIEEATWDIGFSSKPGGFLVFS
        +G+QVFLKLSPWRGV+ FGRK   +PSHVLQ QP+ELKEDLSY EE VQILD+KE+VLRN TI L+KVLWRHHG EEATW+  +  K    ++FS
Subjt:  IGEQVFLKLSPWRGVLHFGRKVKFNPSHVLQVQPIELKEDLSYREEVVQILDKKEQVLRNKTIQLVKVLWRHHGIEEATWDIGFSSKPGGFLVFS

KAA0044258.1 reverse transcriptase [Cucumis melo var. makuwa]

2.1e-82

77.95

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Query:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ
        MLRACVLQ KG+WDTHL LMEF+YNN+YQSSIGM  +EALYGRPC+ PVCWNEVGERKLVGPELVQ+T++NIKLIREN++ AQDRQKSYADKRRRNLEFQ
Subjt:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ

Query:  IGEQVFLKLSPWRGVLHFGRKVKFNPSHVLQVQPIELKEDLSYREEVVQILDKKEQVLRNKTIQLVKVLWRHHGIEEATWDIGFSSKPGGFLVFS
        +G+QVFLKLSPWRGV+ FGRK   +PSHVLQ QP+ELKEDLSY EE VQILDKKEQVLRNKTI L+KVLWRHHG EEATW+  +  K    ++FS
Subjt:  IGEQVFLKLSPWRGVLHFGRKVKFNPSHVLQVQPIELKEDLSYREEVVQILDKKEQVLRNKTIQLVKVLWRHHGIEEATWDIGFSSKPGGFLVFS

KAA0067723.1 reverse transcriptase [Cucumis melo var. makuwa]

3.0e-84

72.89

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Query:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ
        MLRACVLQFKGNWDTHLSLMEFAYNN+YQSSI MTLFEALYGRPC+ PVCWNEVGERKLVGPELVQVTSDNIKLI+EN+KIAQDRQKSYADKRRR+LEFQ
Subjt:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ

Query:  IGEQVFLKLSPWRGVLHFGRKVKF--------------------------------------------NPSHVLQVQPIELKEDLSYREEVVQILDKKEQ
        IGEQVFLK SPWRGVLHFGRK K                                             +PSHV QVQPIELKEDLSYREE VQILD+KEQ
Subjt:  IGEQVFLKLSPWRGVLHFGRKVKF--------------------------------------------NPSHVLQVQPIELKEDLSYREEVVQILDKKEQ

Query:  VLRNKTIQLVKVLWRHHGIEEATWD
        VLRNKTIQL++VLWRHHGIEEATW+
Subjt:  VLRNKTIQLVKVLWRHHGIEEATWD

TYJ97418.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

1.0e-84

69.26

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Query:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ
        MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGM  FEALYGRPC+ PVCWNEVGERKLVGPELVQVTSDNIKLI+EN+KIAQDRQKSYADKRRR+LEFQ
Subjt:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ

Query:  IGEQVFLKLSPWRGVLHFGRKVKFNP--------------------------------------------SHVLQVQPIELKEDLSYREEVVQILDKKEQ
        IGEQVFLK SPWRGVLHFGRK K +P                                            SHV QVQPIELKEDLSYREE VQILD+KEQ
Subjt:  IGEQVFLKLSPWRGVLHFGRKVKFNP--------------------------------------------SHVLQVQPIELKEDLSYREEVVQILDKKEQ

Query:  VLRNKTIQLVKVLWRHHGIEEATWDIGFSSKPGGFLVFSDALSI
        VLRNKTIQL+KVLWRHHGIEEATW+     K     +  D LS+
Subjt:  VLRNKTIQLVKVLWRHHGIEEATWDIGFSSKPGGFLVFSDALSI

TYK11723.1 reverse transcriptase [Cucumis melo var. makuwa]

4.0e-81

71.43

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Query:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ
        MLRACVLQF GNWDTHLSLMEFAYNNSYQS+IGM  FEALYG+PC+ PVCWNEVGERKLVGPELVQVTSDNIKLIREN+KIAQDRQKSYADKR+R+LEFQ
Subjt:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ

Query:  IGEQVFLKLSPWRGVLHFGRKVKF--------------------------------------------NPSHVLQVQPIELKEDLSYREEVVQILDKKEQ
        IGEQVFL LSPW+GVL FGRK K                                             +PSHVLQVQPIELKEDLSYREE VQI+D+KEQ
Subjt:  IGEQVFLKLSPWRGVLHFGRKVKF--------------------------------------------NPSHVLQVQPIELKEDLSYREEVVQILDKKEQ

Query:  VLRNKTIQLVKVLWRHHGIEEATW
        VLRNKTI LVKVLWRHHGIEEATW
Subjt:  VLRNKTIQLVKVLWRHHGIEEATW

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TDR2 Reverse transcriptase

1.1e-81

76.92

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Query:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ
        MLRACVLQ KG+WDTHL LMEFAYNN+YQSSIGM  +EALYGRPC+ PVCWNEVGERKLVGPELVQ+T++NIKLIREN++ AQDRQKSYADKRRRNLEFQ
Subjt:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ

Query:  IGEQVFLKLSPWRGVLHFGRKVKFNPSHVLQVQPIELKEDLSYREEVVQILDKKEQVLRNKTIQLVKVLWRHHGIEEATWDIGFSSKPGGFLVFS
        +G+QVFLKLSPWRGV+ FGRK   +PSHVLQ QP+ELKEDLSY EE VQILD+KE+VLRN TI L+KVLWRHHG EEATW+  +  K    ++FS
Subjt:  IGEQVFLKLSPWRGVLHFGRKVKFNPSHVLQVQPIELKEDLSYREEVVQILDKKEQVLRNKTIQLVKVLWRHHGIEEATWDIGFSSKPGGFLVFS

A0A5A7TN04 Reverse transcriptase

1.0e-82

77.95

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Query:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ
        MLRACVLQ KG+WDTHL LMEF+YNN+YQSSIGM  +EALYGRPC+ PVCWNEVGERKLVGPELVQ+T++NIKLIREN++ AQDRQKSYADKRRRNLEFQ
Subjt:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ

Query:  IGEQVFLKLSPWRGVLHFGRKVKFNPSHVLQVQPIELKEDLSYREEVVQILDKKEQVLRNKTIQLVKVLWRHHGIEEATWDIGFSSKPGGFLVFS
        +G+QVFLKLSPWRGV+ FGRK   +PSHVLQ QP+ELKEDLSY EE VQILDKKEQVLRNKTI L+KVLWRHHG EEATW+  +  K    ++FS
Subjt:  IGEQVFLKLSPWRGVLHFGRKVKFNPSHVLQVQPIELKEDLSYREEVVQILDKKEQVLRNKTIQLVKVLWRHHGIEEATWDIGFSSKPGGFLVFS

A0A5A7VI06 Reverse transcriptase

1.4e-84

72.89

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Query:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ
        MLRACVLQFKGNWDTHLSLMEFAYNN+YQSSI MTLFEALYGRPC+ PVCWNEVGERKLVGPELVQVTSDNIKLI+EN+KIAQDRQKSYADKRRR+LEFQ
Subjt:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ

Query:  IGEQVFLKLSPWRGVLHFGRKVKF--------------------------------------------NPSHVLQVQPIELKEDLSYREEVVQILDKKEQ
        IGEQVFLK SPWRGVLHFGRK K                                             +PSHV QVQPIELKEDLSYREE VQILD+KEQ
Subjt:  IGEQVFLKLSPWRGVLHFGRKVKF--------------------------------------------NPSHVLQVQPIELKEDLSYREEVVQILDKKEQ

Query:  VLRNKTIQLVKVLWRHHGIEEATWD
        VLRNKTIQL++VLWRHHGIEEATW+
Subjt:  VLRNKTIQLVKVLWRHHGIEEATWD

A0A5D3BGW7 Putative DNA/RNA polymerases superfamily protein

4.9e-85

69.26

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Query:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ
        MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGM  FEALYGRPC+ PVCWNEVGERKLVGPELVQVTSDNIKLI+EN+KIAQDRQKSYADKRRR+LEFQ
Subjt:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ

Query:  IGEQVFLKLSPWRGVLHFGRKVKFNP--------------------------------------------SHVLQVQPIELKEDLSYREEVVQILDKKEQ
        IGEQVFLK SPWRGVLHFGRK K +P                                            SHV QVQPIELKEDLSYREE VQILD+KEQ
Subjt:  IGEQVFLKLSPWRGVLHFGRKVKFNP--------------------------------------------SHVLQVQPIELKEDLSYREEVVQILDKKEQ

Query:  VLRNKTIQLVKVLWRHHGIEEATWDIGFSSKPGGFLVFSDALSI
        VLRNKTIQL+KVLWRHHGIEEATW+     K     +  D LS+
Subjt:  VLRNKTIQLVKVLWRHHGIEEATWDIGFSSKPGGFLVFSDALSI

A0A5D3CIH8 Reverse transcriptase

1.9e-81

71.43

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Query:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ
        MLRACVLQF GNWDTHLSLMEFAYNNSYQS+IGM  FEALYG+PC+ PVCWNEVGERKLVGPELVQVTSDNIKLIREN+KIAQDRQKSYADKR+R+LEFQ
Subjt:  MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQ

Query:  IGEQVFLKLSPWRGVLHFGRKVKF--------------------------------------------NPSHVLQVQPIELKEDLSYREEVVQILDKKEQ
        IGEQVFL LSPW+GVL FGRK K                                             +PSHVLQVQPIELKEDLSYREE VQI+D+KEQ
Subjt:  IGEQVFLKLSPWRGVLHFGRKVKF--------------------------------------------NPSHVLQVQPIELKEDLSYREEVVQILDKKEQ

Query:  VLRNKTIQLVKVLWRHHGIEEATW
        VLRNKTI LVKVLWRHHGIEEATW
Subjt:  VLRNKTIQLVKVLWRHHGIEEATW

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTGAGAGCATGTGTCCTTCAGTTTAAGGGAAATTGGGATACCCACTTATCACTTATGGAGTTCGCTTATAATAACAGCTACCAGTCTAGTATCGGCATGACACTATT
TGAGGCTTTGTATGGCAGACCATGCAAGATTCCTGTGTGCTGGAACGAGGTGGGAGAACGAAAGCTAGTTGGTCCTGAGTTAGTACAAGTTACGTCAGACAATATTAAGT
TGATTAGGGAAAATATGAAAATAGCTCAAGATCGACAGAAGAGCTATGCAGATAAGCGACGAAGAAATTTAGAGTTCCAAATTGGAGAACAAGTTTTCTTAAAGTTATCT
CCGTGGAGGGGTGTTCTTCATTTTGGGAGGAAAGTTAAGTTTAATCCATCACATGTGTTGCAAGTACAACCAATTGAACTGAAAGAAGACTTGAGTTATAGAGAGGAAGT
AGTTCAGATCCTCGACAAGAAGGAGCAAGTTTTGAGGAACAAAACGATCCAGCTCGTGAAAGTTCTTTGGAGACATCATGGAATAGAGGAAGCAACCTGGGATATAGGAT
TTTCGAGCAAACCAGGAGGATTTCTGGTGTTCTCTGATGCTTTGAGTATTCGGAAGTGCACAAGTCGAATTAGAAGCTCTATTTGGTATGGTTAG

mRNA sequence

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Protein sequence

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MLRACVLQFKGNWDTHLSLMEFAYNNSYQSSIGMTLFEALYGRPCKIPVCWNEVGERKLVGPELVQVTSDNIKLIRENMKIAQDRQKSYADKRRRNLEFQIGEQVFLKLS
PWRGVLHFGRKVKFNPSHVLQVQPIELKEDLSYREEVVQILDKKEQVLRNKTIQLVKVLWRHHGIEEATWDIGFSSKPGGFLVFSDALSIRKCTSRIRSSIWYG

Pay0015342 (gene) of Melon (Payzawat) v1 genome