CuGenDBv2

Gene ID	Pay0015449
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Integrase
Genome location	chr04:12104307..12104702
RNA-Seq Expression	Pay0015449
Synteny	Pay0015449
Gene Ontology terms	GO:0006397 - mRNA processing (biological process) GO:0015074 - DNA integration (biological process) GO:0003729 - mRNA binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039947.1 integrase [Cucumis melo var. makuwa]

5.6e-50

81.68

Show/hide

Query:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWE------------------TKLKSDGNVEKYKVRLVVKGYK
        MRSIQEIYNTTNRINDDHFANFALF+GVDPVTFDE IQDEKWKIAMDQEIDA+RRNETWE                  TKLKSDGNVEKYK RLVVKGYK
Subjt:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWE------------------TKLKSDGNVEKYKVRLVVKGYK

Query:  QEYGVGYEEIFAPVTRIETIGLILSLAAQNG
        QEYGV YEEIFAPVTRIETI LILSLAAQNG
Subjt:  QEYGVGYEEIFAPVTRIETIGLILSLAAQNG

KAA0060377.1 integrase [Cucumis melo var. makuwa]

5.6e-50

81.68

Show/hide

Query:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWE------------------TKLKSDGNVEKYKVRLVVKGYK
        MRSIQEIYNTTNRINDDHFANFALF+GVDPVTFDE IQDEKWKIAMDQEIDA+RRNETWE                  TKLKSDGNVEKYK RLVVKGYK
Subjt:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWE------------------TKLKSDGNVEKYKVRLVVKGYK

Query:  QEYGVGYEEIFAPVTRIETIGLILSLAAQNG
        QEYGV YEEIFAPVTRIETI LILSLAAQNG
Subjt:  QEYGVGYEEIFAPVTRIETIGLILSLAAQNG

TYJ95504.1 integrase [Cucumis melo var. makuwa]

5.6e-50

81.68

Show/hide

Query:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWE------------------TKLKSDGNVEKYKVRLVVKGYK
        MRSIQEIYNTTNRINDDHFANFALF+GVDPVTFDE IQDEKWKIAMDQEIDA+RRNETWE                  TKLKSDGNVEKYK RLVVKGYK
Subjt:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWE------------------TKLKSDGNVEKYKVRLVVKGYK

Query:  QEYGVGYEEIFAPVTRIETIGLILSLAAQNG
        QEYGV YEEIFAPVTRIETI LILSLAAQNG
Subjt:  QEYGVGYEEIFAPVTRIETIGLILSLAAQNG

TYK30104.1 integrase [Cucumis melo var. makuwa]

5.6e-50

81.68

Show/hide

Query:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWE------------------TKLKSDGNVEKYKVRLVVKGYK
        MRSIQEIYNTTNRINDDHFANFALF+GVDPVTFDE IQDEKWKIAMDQEIDA+RRNETWE                  TKLKSDGNVEKYK RLVVKGYK
Subjt:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWE------------------TKLKSDGNVEKYKVRLVVKGYK

Query:  QEYGVGYEEIFAPVTRIETIGLILSLAAQNG
        QEYGV YEEIFAPVTRIETI LILSLAAQNG
Subjt:  QEYGVGYEEIFAPVTRIETIGLILSLAAQNG

XP_016900110.1 PREDICTED: uncharacterized mitochondrial protein AtMg00820-like [Cucumis melo]

1.3e-51

92.92

Show/hide

Query:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWETKLKSDGNVEKYKVRLVVKGYKQEYGVGYEEIFAPVTRIE
        MRSIQEIYNTTNRINDDHFANFALF+GVDPVTFDE IQ EKWKIAMDQEIDA+RRNETWETK KSDGNVEKYK RLVVKGYKQEYGV YEEIFAPVTRIE
Subjt:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWETKLKSDGNVEKYKVRLVVKGYKQEYGVGYEEIFAPVTRIE

Query:  TIGLILSLAAQNG
        TI LILSLAAQNG
Subjt:  TIGLILSLAAQNG

TrEMBL top hits

e value

%identity

Alignment

A0A1S4DWL8 uncharacterized mitochondrial protein AtMg00820-like

6.5e-52

92.92

Show/hide

Query:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWETKLKSDGNVEKYKVRLVVKGYKQEYGVGYEEIFAPVTRIE
        MRSIQEIYNTTNRINDDHFANFALF+GVDPVTFDE IQ EKWKIAMDQEIDA+RRNETWETK KSDGNVEKYK RLVVKGYKQEYGV YEEIFAPVTRIE
Subjt:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWETKLKSDGNVEKYKVRLVVKGYKQEYGVGYEEIFAPVTRIE

Query:  TIGLILSLAAQNG
        TI LILSLAAQNG
Subjt:  TIGLILSLAAQNG

A0A5A7UZJ8 Integrase

2.7e-50

81.68

Show/hide

Query:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWE------------------TKLKSDGNVEKYKVRLVVKGYK
        MRSIQEIYNTTNRINDDHFANFALF+GVDPVTFDE IQDEKWKIAMDQEIDA+RRNETWE                  TKLKSDGNVEKYK RLVVKGYK
Subjt:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWE------------------TKLKSDGNVEKYKVRLVVKGYK

Query:  QEYGVGYEEIFAPVTRIETIGLILSLAAQNG
        QEYGV YEEIFAPVTRIETI LILSLAAQNG
Subjt:  QEYGVGYEEIFAPVTRIETIGLILSLAAQNG

A0A5D3BQ81 Integrase

2.7e-50

81.68

Show/hide

Query:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWE------------------TKLKSDGNVEKYKVRLVVKGYK
        MRSIQEIYNTTNRINDDHFANFALF+GVDPVTFDE IQDEKWKIAMDQEIDA+RRNETWE                  TKLKSDGNVEKYK RLVVKGYK
Subjt:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWE------------------TKLKSDGNVEKYKVRLVVKGYK

Query:  QEYGVGYEEIFAPVTRIETIGLILSLAAQNG
        QEYGV YEEIFAPVTRIETI LILSLAAQNG
Subjt:  QEYGVGYEEIFAPVTRIETIGLILSLAAQNG

A0A5D3CLV1 Integrase

2.7e-50

81.68

Show/hide

Query:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWE------------------TKLKSDGNVEKYKVRLVVKGYK
        MRSIQEIYNTTNRINDDHFANFALF+GVDPVTFDE IQDEKWKIAMDQEIDA+RRNETWE                  TKLKSDGNVEKYK RLVVKGYK
Subjt:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWE------------------TKLKSDGNVEKYKVRLVVKGYK

Query:  QEYGVGYEEIFAPVTRIETIGLILSLAAQNG
        QEYGV YEEIFAPVTRIETI LILSLAAQNG
Subjt:  QEYGVGYEEIFAPVTRIETIGLILSLAAQNG

A0A5D3E3T2 Integrase

2.7e-50

81.68

Show/hide

Query:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWE------------------TKLKSDGNVEKYKVRLVVKGYK
        MRSIQEIYNTTNRINDDHFANFALF+GVDPVTFDE IQDEKWKIAMDQEIDA+RRNETWE                  TKLKSDGNVEKYK RLVVKGYK
Subjt:  MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWE------------------TKLKSDGNVEKYKVRLVVKGYK

Query:  QEYGVGYEEIFAPVTRIETIGLILSLAAQNG
        QEYGV YEEIFAPVTRIETI LILSLAAQNG
Subjt:  QEYGVGYEEIFAPVTRIETIGLILSLAAQNG

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

5.0e-09

34.71

Show/hide

Query:  NRINDDHFANFALFSGVDPVTFDEV-IQDEK--WKIAMDQEIDALRRNETW------------------ETKLKSDGNVEKYKVRLVVKGYKQEYGVGYE
        N +N        +F+ V P +FDE+  +D+K  W+ A++ E++A + N TW                    K    GN  +YK RLV +G+ Q+Y + YE
Subjt:  NRINDDHFANFALFSGVDPVTFDEV-IQDEK--WKIAMDQEIDALRRNETW------------------ETKLKSDGNVEKYKVRLVVKGYKQEYGVGYE

Query:  EIFAPVTRIETIGLILSLAAQ
        E FAPV RI +   ILSL  Q
Subjt:  EIFAPVTRIETIGLILSLAAQ

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.1e-08

37.86

Show/hide

Query:  DPVTFDEVI-QDEKWKI--AMDQEIDALRRNET----------------WETKLKSDGNVE--KYKVRLVVKGYKQEYGVGYEEIFAPVTRIETIGLILS
        +P +  EV+   EK ++  AM +E+++L++N T                W  KLK DG+ +  +YK RLVVKG++Q+ G+ ++EIF+PV ++ +I  ILS
Subjt:  DPVTFDEVI-QDEKWKI--AMDQEIDALRRNET----------------WETKLKSDGNVE--KYKVRLVVKGYKQEYGVGYEEIFAPVTRIETIGLILS

Query:  LAA
        LAA
Subjt:  LAA

P92520 Uncharacterized mitochondrial protein AtMg00820

1.8e-11

33.9

Show/hide

Query:  NRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETW------------------ETKLKSDGNVEKYKVRLVVKGYKQEYGVGYEEIF
        N++N  +          +P +    ++D  W  AM +E+DAL RN+TW                  +TKL SDG +++ K RLV KG+ QE G+ + E +
Subjt:  NRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETW------------------ETKLKSDGNVEKYKVRLVVKGYKQEYGVGYEEIF

Query:  APVTRIETIGLILSLAAQ
        +PV R  TI  IL++A Q
Subjt:  APVTRIETIGLILSLAAQ

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

5.9e-10

Show/hide

Query:  DPVTFDEVIQDEKWKIAMDQEIDALRRNETWE-------------------TKLKSDGNVEKYKVRLVVKGYKQEYGVGYEEIFAPVTRIETIGLILSLA
        +P T  + ++DE+W+ AM  EI+A   N TW+                    K  SDG++ +YK RLV KGY Q  G+ Y E F+PV +  +I ++L +A
Subjt:  DPVTFDEVIQDEKWKIAMDQEIDALRRNETWE-------------------TKLKSDGNVEKYKVRLVVKGYKQEYGVGYEEIFAPVTRIETIGLILSLA

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

5.9e-10

33.02

Show/hide

Query:  ALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWE-------------------TKLKSDGNVEKYKVRLVVKGYKQEYGVGYEEIFAPVTRIETIG
        +L +  +P T  + ++D++W+ AM  EI+A   N TW+                    K  SDG++ +YK RLV KGY Q  G+ Y E F+PV +  +I 
Subjt:  ALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWE-------------------TKLKSDGNVEKYKVRLVVKGYKQEYGVGYEEIFAPVTRIETIG

Query:  LILSLA
        ++L +A
Subjt:  LILSLA

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

8.4e-12

Show/hide

Query:  DPVTFDEVIQDEKWKIAMDQEIDALRRNETWE------------------TKLKSDGNVEKYKVRLVVKGYKQEYGVGYEEIFAPVTRIETIGLILSLAA
        +P T++E  +   W  AMD EI A+    TWE                   K  SDG +E+YK RLV KGY Q+ G+ + E F+PV ++ ++ LIL+++A
Subjt:  DPVTFDEVIQDEKWKIAMDQEIDALRRNETWE------------------TKLKSDGNVEKYKVRLVVKGYKQEYGVGYEEIFAPVTRIETIGLILSLAA

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)

1.3e-12

33.9

Show/hide

Query:  NRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETW------------------ETKLKSDGNVEKYKVRLVVKGYKQEYGVGYEEIF
        N++N  +          +P +    ++D  W  AM +E+DAL RN+TW                  +TKL SDG +++ K RLV KG+ QE G+ + E +
Subjt:  NRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETW------------------ETKLKSDGNVEKYKVRLVVKGYKQEYGVGYEEIF

Query:  APVTRIETIGLILSLAAQ
        +PV R  TI  IL++A Q
Subjt:  APVTRIETIGLILSLAAQ

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGGAGTATTCAAGAAATTTATAATACCACTAACAGGATTAATGATGATCATTTTGCTAATTTTGCATTATTTTCTGGTGTTGATCCTGTAACTTTTGATGAAGTCAT
CCAAGATGAGAAATGGAAGATTGCAATGGATCAAGAAATTGATGCGTTAAGGAGAAATGAAACATGGGAAACAAAGTTGAAGTCAGATGGTAATGTTGAAAAATACAAGG
TAAGACTTGTTGTAAAAGGCTACAAGCAGGAATATGGTGTGGGTTATGAAGAAATATTTGCCCCTGTGACAAGAATTGAGACCATTGGATTGATTTTGTCATTAGCTGCT
CAAAATGGATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MRSIQEIYNTTNRINDDHFANFALFSGVDPVTFDEVIQDEKWKIAMDQEIDALRRNETWETKLKSDGNVEKYKVRLVVKGYKQEYGVGYEEIFAPVTRIETIGLILSLAA
QNG

Pay0015449 (gene) of Melon (Payzawat) v1 genome