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Pay0015540 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0015540
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGag/pol protein
Genome locationchr03:10496329..10497287
RNA-Seq ExpressionPay0015540
SyntenyPay0015540
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR010006 - Bacteriophage P4, Psu, polarity suppression protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035987.1 gag/pol protein [Cucumis melo var. makuwa]3.8e-5774.68Show/hide
Query:  ILVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTSV
        ILVVDDLRFVL+E+CPQ P SNANRTS++VYD+WIKA+EKA VYILASM DVL KKHESLAT  +I+DSL+ MFG++EWS+RHE IKYIYTK MKE TS+
Subjt:  ILVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTSV

Query:  REHILDIMMHFNIAEVNGTAIDEANQENSSLKRSSKAEIMLKVGTGKMVSTEVV
        REH+LD+MMH NIAEVNG AIDEANQENSS K+ S+ E+ LKVGTG+MVS + V
Subjt:  REHILDIMMHFNIAEVNGTAIDEANQENSSLKRSSKAEIMLKVGTGKMVSTEVV

KAA0054281.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-5474.84Show/hide
Query:  LVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTSVR
        L+VDDLRFVL+E+CPQ P SNANRTS++ YD+WIKANEKA VYI ASM DVL K+HESLAT  EIMDSL+ MFG+ EWSLRHEAIKYIYTK MKE TSVR
Subjt:  LVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTSVR

Query:  EHILDIMMHFNIAEVNGTAIDEA-------NQENSSLKRSSKAEIMLKVGTGKMV
        EH+LD+MMHFNIAEVNG AIDEA        +ENSS KR SK EI LKVGTG+MV
Subjt:  EHILDIMMHFNIAEVNGTAIDEA-------NQENSSLKRSSKAEIMLKVGTGKMV

KAA0061994.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-5575Show/hide
Query:  VVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTSVRE
        +VDDLRF L+E+CPQ PT NANRTSQ  YD+WIK +EK RVYILASM+DVL KKHESLATA EIMDSL+ MFG+ EWSLR EAIKYIYTK MKEGTSV+E
Subjt:  VVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTSVRE

Query:  HILDIMMHFNIAEVNGTAIDEANQENSSLKRSSKAEIMLKVGTGKMVSTEVV
        H+LD+MMHFNIAEVNG AIDE NQ+NSS K+ S+ EI LKVGT +MVS + V
Subjt:  HILDIMMHFNIAEVNGTAIDEANQENSSLKRSSKAEIMLKVGTGKMVSTEVV

TYK29682.1 gag/pol protein [Cucumis melo var. makuwa]2.9e-5776.62Show/hide
Query:  ILVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTSV
        ILVVDDLRF+L+E+C Q PT NANR S++ YD+WIKANEKARVYILASM DVL KK+ESLATA EIMDSL+ +FG+ EWSLRHEAIKYIYTK MKEGTSV
Subjt:  ILVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTSV

Query:  REHILDIMMHFNIAEVNGTAIDEANQENSSLKRSSKAEIMLKVGTGKMVSTEVV
        REH+LD+MMHFNIAE+NG  IDEANQE SS KR S+ EI LKVGTG+MVS   V
Subjt:  REHILDIMMHFNIAEVNGTAIDEANQENSSLKRSSKAEIMLKVGTGKMVSTEVV

XP_008445796.1 PREDICTED: uncharacterized protein LOC103488720 [Cucumis melo]2.9e-7395.48Show/hide
Query:  MILVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTS
        MILVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYI TKHMKEGTS
Subjt:  MILVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTS

Query:  VREHILDIMMHFNIAEVNGTAIDEANQENSSLKRSSKAEIMLKVGTGKMVSTEVV
        VR+HILDI MHFNIAEVNGTAI+EANQENSSLKRSSK+EI LKV TGKMVSTEVV
Subjt:  VREHILDIMMHFNIAEVNGTAIDEANQENSSLKRSSKAEIMLKVGTGKMVSTEVV

TrEMBL top hitse value%identityAlignment
A0A1S3BED4 uncharacterized protein LOC1034887201.4e-7395.48Show/hide
Query:  MILVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTS
        MILVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYI TKHMKEGTS
Subjt:  MILVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTS

Query:  VREHILDIMMHFNIAEVNGTAIDEANQENSSLKRSSKAEIMLKVGTGKMVSTEVV
        VR+HILDI MHFNIAEVNGTAI+EANQENSSLKRSSK+EI LKV TGKMVSTEVV
Subjt:  VREHILDIMMHFNIAEVNGTAIDEANQENSSLKRSSKAEIMLKVGTGKMVSTEVV

A0A5A7UXD3 Gag/pol protein1.4e-7395.48Show/hide
Query:  MILVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTS
        MILVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYI TKHMKEGTS
Subjt:  MILVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTS

Query:  VREHILDIMMHFNIAEVNGTAIDEANQENSSLKRSSKAEIMLKVGTGKMVSTEVV
        VR+HILDI MHFNIAEVNGTAI+EANQENSSLKRSSK+EI LKV TGKMVSTEVV
Subjt:  VREHILDIMMHFNIAEVNGTAIDEANQENSSLKRSSKAEIMLKVGTGKMVSTEVV

A0A5A7V3W4 Gag/pol protein5.9e-5675Show/hide
Query:  VVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTSVRE
        +VDDLRF L+E+CPQ PT NANRTSQ  YD+WIK +EK RVYILASM+DVL KKHESLATA EIMDSL+ MFG+ EWSLR EAIKYIYTK MKEGTSV+E
Subjt:  VVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTSVRE

Query:  HILDIMMHFNIAEVNGTAIDEANQENSSLKRSSKAEIMLKVGTGKMVSTEVV
        H+LD+MMHFNIAEVNG AIDE NQ+NSS K+ S+ EI LKVGT +MVS + V
Subjt:  HILDIMMHFNIAEVNGTAIDEANQENSSLKRSSKAEIMLKVGTGKMVSTEVV

A0A5D3E173 Gag/pol protein1.4e-5776.62Show/hide
Query:  ILVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTSV
        ILVVDDLRF+L+E+C Q PT NANR S++ YD+WIKANEKARVYILASM DVL KK+ESLATA EIMDSL+ +FG+ EWSLRHEAIKYIYTK MKEGTSV
Subjt:  ILVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTSV

Query:  REHILDIMMHFNIAEVNGTAIDEANQENSSLKRSSKAEIMLKVGTGKMVSTEVV
        REH+LD+MMHFNIAE+NG  IDEANQE SS KR S+ EI LKVGTG+MVS   V
Subjt:  REHILDIMMHFNIAEVNGTAIDEANQENSSLKRSSKAEIMLKVGTGKMVSTEVV

A0A5D3E3F1 Gag/pol protein1.8e-5774.68Show/hide
Query:  ILVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTSV
        ILVVDDLRFVL+E+CPQ P SNANRTS++VYD+WIKA+EKA VYILASM DVL KKHESLAT  +I+DSL+ MFG++EWS+RHE IKYIYTK MKE TS+
Subjt:  ILVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTSV

Query:  REHILDIMMHFNIAEVNGTAIDEANQENSSLKRSSKAEIMLKVGTGKMVSTEVV
        REH+LD+MMH NIAEVNG AIDEANQENSS K+ S+ E+ LKVGTG+MVS + V
Subjt:  REHILDIMMHFNIAEVNGTAIDEANQENSSLKRSSKAEIMLKVGTGKMVSTEVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACTAGTGGTTGACGATTTAAGATTTGTTTTATCTGAGAAATGTCCTCAAGCTCCTACCTCTAATGCTAATCGAACTAGTCAAGAAGTATATGATCAATGGATAAA
AGCTAATGAAAAAGCTCGTGTCTATATTCTTGCAAGCATGTATGATGTTTTAGTGAAGAAACATGAATCCTTAGCCACGGCTACAGAGATTATGGATTCATTAAGGGAAA
TGTTTGGGAAAAAAGAATGGTCCCTAAGACACGAGGCAATCAAATACATTTACACTAAGCATATGAAGGAGGGGACTTCTGTTAGAGAACATATCCTGGACATTATGATG
CACTTCAATATCGCCGAAGTAAATGGTACTGCCATCGACGAGGCTAATCAGGAAAATAGTTCTTTGAAAAGGTCTTCAAAAGCCGAGATCATGCTCAAGGTTGGAACAGG
AAAGATGGTCTCAACTGAAGTAGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATACTAGTGGTTGACGATTTAAGATTTGTTTTATCTGAGAAATGTCCTCAAGCTCCTACCTCTAATGCTAATCGAACTAGTCAAGAAGTATATGATCAATGGATAAA
AGCTAATGAAAAAGCTCGTGTCTATATTCTTGCAAGCATGTATGATGTTTTAGTGAAGAAACATGAATCCTTAGCCACGGCTACAGAGATTATGGATTCATTAAGGGAAA
TGTTTGGGAAAAAAGAATGGTCCCTAAGACACGAGGCAATCAAATACATTTACACTAAGCATATGAAGGAGGGGACTTCTGTTAGAGAACATATCCTGGACATTATGATG
CACTTCAATATCGCCGAAGTAAATGGTACTGCCATCGACGAGGCTAATCAGGAAAATAGTTCTTTGAAAAGGTCTTCAAAAGCCGAGATCATGCTCAAGGTTGGAACAGG
AAAGATGGTCTCAACTGAAGTAGTGTGA
Protein sequenceShow/hide protein sequence
MILVVDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIYTKHMKEGTSVREHILDIMM
HFNIAEVNGTAIDEANQENSSLKRSSKAEIMLKVGTGKMVSTEVV