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Pay0015652 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0015652
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGag/pol protein
Genome locationchr03:17247223..17247750
RNA-Seq ExpressionPay0015652
SyntenyPay0015652
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035676.1 gag/pol protein [Cucumis melo var. makuwa]6.9e-6577.01Show/hide
Query:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRAT----------NKKACVYILASMSDVLAKKHESLATAKEIVDSLKG
        MN+SIVQLLAS+KLN +NYA WKSNLNTILVVDDLRF+LTEECPQTP SNANRA+          N+KA VYILASMSDVLAKKHE LAT KEIVDSLKG
Subjt:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRAT----------NKKACVYILASMSDVLAKKHESLATAKEIVDSLKG

Query:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFIRVSSEELHTILNECVP
        MFGQP+WSLRHEAIKYIYTKRMK+GTSVREHVLDMMMHFNI EVNGG IDEA QVSFI      L ++L   +P
Subjt:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFIRVSSEELHTILNECVP

KAA0050552.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-6482.91Show/hide
Query:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRAT----------NKKACVYILASMSDVLAKKHESLATAKEIVDSLKG
        MN+SIVQLLASEKLN +NYAAWKSNLNTILVVDDLRF+LTEECPQT ASNANRA+          N+KA VYILASM+DVLAKKHESLAT K+I+DSLKG
Subjt:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRAT----------NKKACVYILASMSDVLAKKHESLATAKEIVDSLKG

Query:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFI
        MFGQP+WSLRHEAIKYIYTKRMKEGTSVRE+VLDMMMHFNIAEVNG  IDEA QVSFI
Subjt:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFI

KAA0055182.1 gag/pol protein [Cucumis melo var. makuwa]6.2e-6677.59Show/hide
Query:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRAT----------NKKACVYILASMSDVLAKKHESLATAKEIVDSLKG
        MN+SIVQLLASEKLN +NYAAWKSNLNTILVVDDLRF+LT+ECPQTP SNANRA+          N+K  VYILASMSDVLAKK+ESLATAKEI+DSLKG
Subjt:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRAT----------NKKACVYILASMSDVLAKKHESLATAKEIVDSLKG

Query:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFIRVSSEELHTILNECVP
        MFGQP+WSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGG IDEA QV+FI      L ++L   +P
Subjt:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFIRVSSEELHTILNECVP

TYJ97035.1 gag/pol protein [Cucumis melo var. makuwa]5.8e-6481.65Show/hide
Query:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRAT----------NKKACVYILASMSDVLAKKHESLATAKEIVDSLKG
        MN+SIVQLLA EKLN +NYAAWKSNLNTILVVDDLRFVLTEECPQTP+SNA++ +          N+KACVYILASMSDVLAKKHESLATAKEI+DSLKG
Subjt:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRAT----------NKKACVYILASMSDVLAKKHESLATAKEIVDSLKG

Query:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFI
        MFGQP WSLRHE IKYIY KRMKEGTS++EHVLDMMMHFNI EVNGG IDEA QVSFI
Subjt:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFI

TYK01653.1 gag/pol protein [Cucumis melo var. makuwa]4.5e-7284.48Show/hide
Query:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRATNK----------KACVYILASMSDVLAKKHESLATAKEIVDSLKG
        MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRA+ K          K CVYILASMSDVLAKKHESLAT KEIVDSLKG
Subjt:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRATNK----------KACVYILASMSDVLAKKHESLATAKEIVDSLKG

Query:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFIRVSSEELHTILNECVP
        MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFI      L ++L   +P
Subjt:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFIRVSSEELHTILNECVP

TrEMBL top hitse value%identityAlignment
A0A5A7T0E9 Gag/pol protein3.3e-6577.01Show/hide
Query:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRAT----------NKKACVYILASMSDVLAKKHESLATAKEIVDSLKG
        MN+SIVQLLAS+KLN +NYA WKSNLNTILVVDDLRF+LTEECPQTP SNANRA+          N+KA VYILASMSDVLAKKHE LAT KEIVDSLKG
Subjt:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRAT----------NKKACVYILASMSDVLAKKHESLATAKEIVDSLKG

Query:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFIRVSSEELHTILNECVP
        MFGQP+WSLRHEAIKYIYTKRMK+GTSVREHVLDMMMHFNI EVNGG IDEA QVSFI      L ++L   +P
Subjt:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFIRVSSEELHTILNECVP

A0A5A7UH70 Gag/pol protein3.0e-6677.59Show/hide
Query:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRAT----------NKKACVYILASMSDVLAKKHESLATAKEIVDSLKG
        MN+SIVQLLASEKLN +NYAAWKSNLNTILVVDDLRF+LT+ECPQTP SNANRA+          N+K  VYILASMSDVLAKK+ESLATAKEI+DSLKG
Subjt:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRAT----------NKKACVYILASMSDVLAKKHESLATAKEIVDSLKG

Query:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFIRVSSEELHTILNECVP
        MFGQP+WSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGG IDEA QV+FI      L ++L   +P
Subjt:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFIRVSSEELHTILNECVP

A0A5D3BF11 Gag/pol protein2.8e-6481.65Show/hide
Query:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRAT----------NKKACVYILASMSDVLAKKHESLATAKEIVDSLKG
        MN+SIVQLLA EKLN +NYAAWKSNLNTILVVDDLRFVLTEECPQTP+SNA++ +          N+KACVYILASMSDVLAKKHESLATAKEI+DSLKG
Subjt:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRAT----------NKKACVYILASMSDVLAKKHESLATAKEIVDSLKG

Query:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFI
        MFGQP WSLRHE IKYIY KRMKEGTS++EHVLDMMMHFNI EVNGG IDEA QVSFI
Subjt:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFI

A0A5D3BPM3 Gag/pol protein2.2e-7284.48Show/hide
Query:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRATNK----------KACVYILASMSDVLAKKHESLATAKEIVDSLKG
        MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRA+ K          K CVYILASMSDVLAKKHESLAT KEIVDSLKG
Subjt:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRATNK----------KACVYILASMSDVLAKKHESLATAKEIVDSLKG

Query:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFIRVSSEELHTILNECVP
        MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFI      L ++L   +P
Subjt:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFIRVSSEELHTILNECVP

A0A5D3D5J6 Gag/pol protein1.3e-6482.91Show/hide
Query:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRAT----------NKKACVYILASMSDVLAKKHESLATAKEIVDSLKG
        MN+SIVQLLASEKLN +NYAAWKSNLNTILVVDDLRF+LTEECPQT ASNANRA+          N+KA VYILASM+DVLAKKHESLAT K+I+DSLKG
Subjt:  MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRAT----------NKKACVYILASMSDVLAKKHESLATAKEIVDSLKG

Query:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFI
        MFGQP+WSLRHEAIKYIYTKRMKEGTSVRE+VLDMMMHFNIAEVNG  IDEA QVSFI
Subjt:  MFGQPDWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAACTCGATAGTTCAATTATTAGCTTCCGAAAAACTTAACGACAATAACTATGCAGCATGGAAATCAAATCTTAACACAATACTAGTTGTTGATGATTTAAGATT
TGTCTTAACTGAGGAATGTCCTCAAACCCCTGCCTCAAATGCAAATCGAGCTACAAATAAGAAAGCCTGTGTCTACATTCTTGCTAGCATGTCAGATGTTTTAGCAAAGA
AGCATGAATCCTTAGCCACGGCTAAAGAAATTGTGGATTCTTTGAAAGGAATGTTTGGGCAACCAGATTGGTCCCTAAGACACGAGGCAATCAAATACATTTACACTAAG
CGTATGAAGGAGGGGACCTCTGTTAGAGAACATGTCCTAGACATGATGATGCACTTCAATATAGCTGAGGTAAATGGTGGTGTCATCGATGAGGCTAAACAAGTTAGCTT
TATTAGAGTCTCTTCCGAAGAGCTTCATACCATTCTAAACGAATGCGTCCCTGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAATAACTCGATAGTTCAATTATTAGCTTCCGAAAAACTTAACGACAATAACTATGCAGCATGGAAATCAAATCTTAACACAATACTAGTTGTTGATGATTTAAGATT
TGTCTTAACTGAGGAATGTCCTCAAACCCCTGCCTCAAATGCAAATCGAGCTACAAATAAGAAAGCCTGTGTCTACATTCTTGCTAGCATGTCAGATGTTTTAGCAAAGA
AGCATGAATCCTTAGCCACGGCTAAAGAAATTGTGGATTCTTTGAAAGGAATGTTTGGGCAACCAGATTGGTCCCTAAGACACGAGGCAATCAAATACATTTACACTAAG
CGTATGAAGGAGGGGACCTCTGTTAGAGAACATGTCCTAGACATGATGATGCACTTCAATATAGCTGAGGTAAATGGTGGTGTCATCGATGAGGCTAAACAAGTTAGCTT
TATTAGAGTCTCTTCCGAAGAGCTTCATACCATTCTAAACGAATGCGTCCCTGAATAA
Protein sequenceShow/hide protein sequence
MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRATNKKACVYILASMSDVLAKKHESLATAKEIVDSLKGMFGQPDWSLRHEAIKYIYTK
RMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFIRVSSEELHTILNECVPE