CuGenDBv2

Gene ID	Pay0015849
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Gag/pol protein
Genome location	chr08:24233553..24234122
RNA-Seq Expression	Pay0015849
Synteny	Pay0015849
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035676.1 gag/pol protein [Cucumis melo var. makuwa]

5.8e-78

82.01

Show/hide

Query:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSNSNQTT--------------RVYILPSMSDVLAKKHESLATTKEIMDSLKG
        MNSSIVQLLASKKLN DNYA WKSNLNTILVVDDLRF+LTEECPQTPTSN+N+ +              RVYIL SMSDVLAKKHE LATTKEI+DSLKG
Subjt:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSNSNQTT--------------RVYILPSMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL
        MFGQPEWSLRHEAIKY+YT  MK+GTS+REHVLDMMMHFNI EVNGGAIDEANQVSFILESL KSFIPFQ NASLNK+E NLTTLLNEL
Subjt:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL

KAA0041460.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-77

81.48

Show/hide

Query:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSN--------------SNQTTRVYILPSMSDVLAKKHESLATTKEIMDSLKG
        MNSSIVQLL+S+KLN DNYAAWKSNLNTILVVDDLRFVLTEECP+TPTSN              +N+  RVYIL SMSDVLAKKHESLAT KEIM+SLKG
Subjt:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSN--------------SNQTTRVYILPSMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL
        MFGQP+WSLRHEAIKY+YT  MKEGTSIREHVLDMM+HFNI EVNGGAIDEANQVS ILESLPKSFIPFQ+NASLNK+E NLTTLLNEL
Subjt:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL

KAA0051437.1 gag/pol protein [Cucumis melo var. makuwa]

2.4e-76

80.95

Show/hide

Query:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSNSNQTT--------------RVYILPSMSDVLAKKHESLATTKEIMDSLKG
        +N+SIVQLLASKKLN DNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSN+N+T+              R YIL +MSDVLAKKHESLA TKEIMDSLK 
Subjt:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSNSNQTT--------------RVYILPSMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL
        MFGQPEWSLR+EAIKY+YT  MKEGTS+REHVLDMMMHFNIAEVN GAID ANQVSFILESLPKSFIPF  NASLNK+E NLTTLLNEL
Subjt:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL

KAA0051988.1 gag/pol protein [Cucumis melo var. makuwa]

2.4e-76

81.48

Show/hide

Query:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSNSNQTT--------------RVYILPSMSDVLAKKHESLATTKEIMDSLKG
        MNSSIVQLLAS+KLN DNYAAWKSNLNTILVVDDLRFVLTEECPQT  SN+N+ +              RVYIL SM DVL KKHESLATTKEIMDSL G
Subjt:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSNSNQTT--------------RVYILPSMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL
        MFGQPEWSLR+EAIKY+YT  MK+GTSIREHVLDMMMHFNI EVNGGAIDEANQVSFILESLPKSFIPFQ NASLNK+E NLTTLLNEL
Subjt:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL

TYK01653.1 gag/pol protein [Cucumis melo var. makuwa]

6.4e-77

80.95

Show/hide

Query:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSNSNQTTR--------------VYILPSMSDVLAKKHESLATTKEIMDSLKG
        MN+SIVQLLAS+KLND+NYAAWKSNLNTILVVDDLRFVLTEECPQTP SN+N+ ++              VYIL SMSDVLAKKHESLATTKEI+DSLKG
Subjt:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSNSNQTTR--------------VYILPSMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL
        MFGQP+WSLRHEAIKY+YT  MKEGTS+REHVLDMMMHFNIAEVNGG IDEA QVSFILESL KSFIPFQ NASLNK+E NLTTLLNEL
Subjt:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0E9 Gag/pol protein

2.8e-78

82.01

Show/hide

Query:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSNSNQTT--------------RVYILPSMSDVLAKKHESLATTKEIMDSLKG
        MNSSIVQLLASKKLN DNYA WKSNLNTILVVDDLRF+LTEECPQTPTSN+N+ +              RVYIL SMSDVLAKKHE LATTKEI+DSLKG
Subjt:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSNSNQTT--------------RVYILPSMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL
        MFGQPEWSLRHEAIKY+YT  MK+GTS+REHVLDMMMHFNI EVNGGAIDEANQVSFILESL KSFIPFQ NASLNK+E NLTTLLNEL
Subjt:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL

A0A5A7U9L2 Gag/pol protein

1.2e-76

81.48

Show/hide

Query:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSNSNQTT--------------RVYILPSMSDVLAKKHESLATTKEIMDSLKG
        MNSSIVQLLAS+KLN DNYAAWKSNLNTILVVDDLRFVLTEECPQT  SN+N+ +              RVYIL SM DVL KKHESLATTKEIMDSL G
Subjt:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSNSNQTT--------------RVYILPSMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL
        MFGQPEWSLR+EAIKY+YT  MK+GTSIREHVLDMMMHFNI EVNGGAIDEANQVSFILESLPKSFIPFQ NASLNK+E NLTTLLNEL
Subjt:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL

A0A5A7UAN2 Gag/pol protein

1.2e-76

80.95

Show/hide

Query:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSNSNQTT--------------RVYILPSMSDVLAKKHESLATTKEIMDSLKG
        +N+SIVQLLASKKLN DNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSN+N+T+              R YIL +MSDVLAKKHESLA TKEIMDSLK 
Subjt:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSNSNQTT--------------RVYILPSMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL
        MFGQPEWSLR+EAIKY+YT  MKEGTS+REHVLDMMMHFNIAEVN GAID ANQVSFILESLPKSFIPF  NASLNK+E NLTTLLNEL
Subjt:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL

A0A5D3BPM3 Gag/pol protein

3.1e-77

80.95

Show/hide

Query:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSNSNQTTR--------------VYILPSMSDVLAKKHESLATTKEIMDSLKG
        MN+SIVQLLAS+KLND+NYAAWKSNLNTILVVDDLRFVLTEECPQTP SN+N+ ++              VYIL SMSDVLAKKHESLATTKEI+DSLKG
Subjt:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSNSNQTTR--------------VYILPSMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL
        MFGQP+WSLRHEAIKY+YT  MKEGTS+REHVLDMMMHFNIAEVNGG IDEA QVSFILESL KSFIPFQ NASLNK+E NLTTLLNEL
Subjt:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL

A0A5D3DL59 Gag/pol protein

8.1e-78

81.48

Show/hide

Query:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSN--------------SNQTTRVYILPSMSDVLAKKHESLATTKEIMDSLKG
        MNSSIVQLL+S+KLN DNYAAWKSNLNTILVVDDLRFVLTEECP+TPTSN              +N+  RVYIL SMSDVLAKKHESLAT KEIM+SLKG
Subjt:  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSN--------------SNQTTRVYILPSMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL
        MFGQP+WSLRHEAIKY+YT  MKEGTSIREHVLDMM+HFNI EVNGGAIDEANQVS ILESLPKSFIPFQ+NASLNK+E NLTTLLNEL
Subjt:  MFGQPEWSLRHEAIKYVYTNSMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAATAGCTCGATAGTTCAATTGTTAGCTTCCAAAAAACTTAACGACGATAACTATGCGGCATGGAAATCAAATCTTAACACAATACTAGTAGTTGATGATTTAAGATT
TGTCTTAACTGAGGAATGTCCTCAAACCCCTACCTCAAATTCAAACCAAACTACTCGTGTCTACATCCTTCCTAGCATGTCTGATGTTTTAGCAAAGAAACATGAATCCT
TAGCGACAACTAAAGAGATAATGGATTCATTAAAAGGAATGTTTGGGCAACCAGAATGGTCCCTAAGACACGAGGCAATTAAATATGTTTACACTAATTCAATGAAGGAG
GGAACCTCTATTAGAGAACATGTCCTAGACATGATGATGCACTTCAATATTGCTGAAGTAAATGGTGGTGCCATCGATGAGGCTAATCAGGTTAGCTTTATCTTAGAGTC
TCTTCCGAAGAGCTTCATACCATTTCAAATAAATGCGTCCTTGAACAAGATGGAGTTAAATCTAACGACCCTTCTAAATGAGCTCTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTSNSNQTTRVYILPSMSDVLAKKHESLATTKEIMDSLKGMFGQPEWSLRHEAIKYVYTNSMKE
GTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQINASLNKMELNLTTLLNEL

Pay0015849 (gene) of Melon (Payzawat) v1 genome