CuGenDBv2

Gene ID	Pay0016041
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Gag-pol polyprotein
Genome location	chr05:20595687..20596103
RNA-Seq Expression	Pay0016041
Synteny	Pay0016041
Gene Ontology terms	GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037770.1 putative mitochondrial protein [Cucumis melo var. makuwa]

1.0e-37

67.65

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Query:  GKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRESH
        GKLAFF GFQIQQ+ T+IF+SQE YARNLNKKFDL+Q KAKI+  ATHIKVS DN GKKVDESLYRNII SLLYIIAS PDI YVA              
Subjt:  GKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRESH

Query:  LRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD
                    GIVEF+VWY FDITVVLLGYCHAD
Subjt:  LRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD

KAA0053137.1 gag-pol polyprotein [Cucumis melo var. makuwa]

2.4e-34

57.25

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Query:  MVGKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRE
        MVG+L+ FLG QI+QK   IF+SQE YARN+ KKF LKQ + K + AATH+K++ D  G +VD  LYR+I+ SLLY+ AS+PDI YV  +CAR+QADPR 
Subjt:  MVGKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRE

Query:  SHLRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD
        + L  VK ILKYV G  +F + YS+D T  L+GYC AD
Subjt:  SHLRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD

TYK22473.1 putative mitochondrial protein [Cucumis melo var. makuwa]

1.3e-37

66.67

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Query:  MVGKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRE
        M GKLAFF GFQIQQ+ T+IF+SQE YARNLNKKFDL+Q KAKI+  ATHIKVS D+ GKKVDESLYRNII SLLYIIAS PDI YVA            
Subjt:  MVGKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRE

Query:  SHLRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD
                      GIVEF+VWY FDITVVLLGYCHAD
Subjt:  SHLRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD

XP_008441943.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]

4.9e-56

84.06

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Query:  MVGKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRE
        M GKLAFF GFQIQQ+ T+IF+SQE YARNLNKKFDL+Q KAKI+  ATHIKVS D+ GKKVDESLYRNII SLLYIIAS PDI YVA VCARFQADPRE
Subjt:  MVGKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRE

Query:  SHLRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD
        SHLR VKYILKYVIGIVEF+VWY FDITVVLLGYCHAD
Subjt:  SHLRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD

XP_016903185.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]

7.3e-36

57.25

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Query:  MVGKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRE
        MVG+L+FFLGFQI+Q+   IF SQE YA+NL  KF + + K K + AATH+K++ D  G+KVD +LYR+II S LY+ AS+PDI +V  VCAR+QADPR 
Subjt:  MVGKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRE

Query:  SHLRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD
        SHL   K+ILKY+ G   + +WY+FD T VL+GYC AD
Subjt:  SHLRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B428 uncharacterized mitochondrial protein AtMg00810-like

2.4e-56

84.06

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Query:  MVGKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRE
        M GKLAFF GFQIQQ+ T+IF+SQE YARNLNKKFDL+Q KAKI+  ATHIKVS D+ GKKVDESLYRNII SLLYIIAS PDI YVA VCARFQADPRE
Subjt:  MVGKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRE

Query:  SHLRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD
        SHLR VKYILKYVIGIVEF+VWY FDITVVLLGYCHAD
Subjt:  SHLRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD

A0A1S4E5D6 uncharacterized mitochondrial protein AtMg00810-like

3.6e-36

57.25

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Query:  MVGKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRE
        MVG+L+FFLGFQI+Q+   IF SQE YA+NL  KF + + K K + AATH+K++ D  G+KVD +LYR+II S LY+ AS+PDI +V  VCAR+QADPR 
Subjt:  MVGKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRE

Query:  SHLRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD
        SHL   K+ILKY+ G   + +WY+FD T VL+GYC AD
Subjt:  SHLRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD

A0A5A7V233 Putative mitochondrial protein

5.0e-38

67.65

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Query:  GKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRESH
        GKLAFF GFQIQQ+ T+IF+SQE YARNLNKKFDL+Q KAKI+  ATHIKVS DN GKKVDESLYRNII SLLYIIAS PDI YVA              
Subjt:  GKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRESH

Query:  LRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD
                    GIVEF+VWY FDITVVLLGYCHAD
Subjt:  LRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD

A0A5D3BPB3 Gag-pol polyprotein

1.1e-34

57.25

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Query:  MVGKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRE
        MVG+L+ FLG QI+QK   IF+SQE YARN+ KKF LKQ + K + AATH+K++ D  G +VD  LYR+I+ SLLY+ AS+PDI YV  +CAR+QADPR 
Subjt:  MVGKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRE

Query:  SHLRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD
        + L  VK ILKYV G  +F + YS+D T  L+GYC AD
Subjt:  SHLRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD

A0A5D3DFZ7 Putative mitochondrial protein

6.5e-38

66.67

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Query:  MVGKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRE
        M GKLAFF GFQIQQ+ T+IF+SQE YARNLNKKFDL+Q KAKI+  ATHIKVS D+ GKKVDESLYRNII SLLYIIAS PDI YVA            
Subjt:  MVGKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRE

Query:  SHLRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD
                      GIVEF+VWY FDITVVLLGYCHAD
Subjt:  SHLRYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

5.3e-05

21.43

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Query:  VGKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYI-IASQPDIPYVASVCARFQADPRE
        + ++  F+G +I+ +  KI+LSQ  Y + +  KF+++   A  +   + I     N  +  +    R++I  L+YI + ++PD+    ++ +R+ +    
Subjt:  VGKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYI-IASQPDIPYVASVCARFQADPRE

Query:  SHLRYVKYILKYVIGIVEFKVWYSFDITV--VLLGYCHAD
           + +K +L+Y+ G ++ K+ +  ++     ++GY  +D
Subjt:  SHLRYVKYILKYVIGIVEFKVWYSFDITV--VLLGYCHAD

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

6.1e-09

30.37

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Query:  KLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRESHL
        +L +FLG + ++  T + LSQ  Y  +L  + ++   K   +  A   K+S  +  K  D + YR I+ SL Y+  ++PDI Y  +  ++F   P E HL
Subjt:  KLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRESHL

Query:  RYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD
        + +K IL+Y+ G     ++     T+ L  Y  AD
Subjt:  RYVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

4.4e-07

26.12

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Query:  LAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRESHLR
        L +FLG + ++    + LSQ  Y  +L  + ++   K   +  AT  K++  +  K  D + YR I+ SL Y+  ++PD+ Y  +  +++   P + H  
Subjt:  LAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRESHLR

Query:  YVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD
         +K +L+Y+ G  +  ++     T+ L  Y  AD
Subjt:  YVKYILKYVIGIVEFKVWYSFDITVVLLGYCHAD

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGTAGGAAAGTTGGCTTTCTTTTTGGGATTTCAAATTCAACAAAAAAGGACTAAAATATTTCTATCACAAGAAATGTATGCTCGAAATTTGAATAAGAAGTTCGACCT
TAAGCAACCAAAAGCTAAGATCTCCTATGCAGCCACACATATCAAAGTCTCTACGGACAACAGAGGTAAGAAAGTGGATGAAAGCTTATATCGCAACATCATAGAGAGCC
TACTATATATTATTGCAAGTCAGCCTGATATCCCATACGTTGCAAGTGTCTGTGCACGATTTCAAGCGGATCCCAGGGAATCTCATTTACGATATGTTAAATATATTCTG
AAATACGTTATAGGTATAGTTGAGTTTAAAGTGTGGTACTCGTTTGACATCACTGTTGTGTTATTAGGGTATTGTCATGCAGATTGA

mRNA sequence

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Protein sequence

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MVGKLAFFLGFQIQQKRTKIFLSQEMYARNLNKKFDLKQPKAKISYAATHIKVSTDNRGKKVDESLYRNIIESLLYIIASQPDIPYVASVCARFQADPRESHLRYVKYIL
KYVIGIVEFKVWYSFDITVVLLGYCHAD

Pay0016041 (gene) of Melon (Payzawat) v1 genome