; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Pay0016146 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0016146
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptionribosome biogenesis protein BRX1 homolog
Genome locationchr03:20956084..20958111
RNA-Seq ExpressionPay0016146
SyntenyPay0016146
Gene Ontology termsGO:0000027 - ribosomal large subunit assembly (biological process)
GO:0006364 - rRNA processing (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR026532 - Ribosome biogenesis protein BRX1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031641.1 ribosome biogenesis protein BRX1-like protein [Cucumis melo var. makuwa]1.6e-1397.67Show/hide
Query:  AMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
        A SAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
Subjt:  AMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
XP_008456708.1 PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo]5.6e-30100Show/hide
Query:  MKTLCSVVLNKKKEFQWQRVVLFLRIGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
        MKTLCSVVLNKKKEFQWQRVVLFLRIGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
Subjt:  MKTLCSVVLNKKKEFQWQRVVLFLRIGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
XP_008460241.1 PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo]8.1e-4593Show/hide
Query:  MSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNHSMNVSTTFTFSMCNPFIVSFYMCCCFKNYLVKHTMRLREVFNTRKEVIIE
        MSA+EELKLIGNYLKGSRPILTFSSNFDKDVLWKL+KEMIIQKFT SPNHSM VSTTFTFSMCNPFIV FYMCCCFKNYLVK T RLREVFNTRKEVIIE
Subjt:  MSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNHSMNVSTTFTFSMCNPFIVSFYMCCCFKNYLVKHTMRLREVFNTRKEVIIE
XP_011659901.2 ribosome biogenesis protein BRX1 homolog 1 [Cucumis sativus]3.4e-1152.87Show/hide
Query:  IGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNHSMNV---STTFTFSMCNPFIVSFYMCCCFKNYLV
        + AM  MEELKL GN+LKGSRPILTFSSNFDKDV WKL+KEMIIQ F     H  +       F FS+ +  I        F+NY +
Subjt:  IGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNHSMNV---STTFTFSMCNPFIVSFYMCCCFKNYLV
XP_031741723.1 ribosome biogenesis protein BRX1 homolog 2-like [Cucumis sativus]1.1e-1267.19Show/hide
Query:  FQWQRVVLFLRIGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNH
        F+ Q V L   + AM  MEELKL GN+LKGSRPILTFSSNFDKDV WKL+KEMIIQ F     H
Subjt:  FQWQRVVLFLRIGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNH
TrEMBL top hitse value%identityAlignment
A0A1S3BQS3 ribosome biogenesis protein BRX1-like4.8e-1151.72Show/hide
Query:  IGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNHSMNV---STTFTFSMCNPFIVSFYMCCCFKNYLV
        + A+  MEELKL GN+LKGSRPILTFSSNFDKDV WKL+KEMIIQ F     H  +       F FS+ +  I        F+NY +
Subjt:  IGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNHSMNV---STTFTFSMCNPFIVSFYMCCCFKNYLV
A0A1S3C4K0 ribosome biogenesis protein BRX1 homolog2.7e-30100Show/hide
Query:  MKTLCSVVLNKKKEFQWQRVVLFLRIGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
        MKTLCSVVLNKKKEFQWQRVVLFLRIGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
Subjt:  MKTLCSVVLNKKKEFQWQRVVLFLRIGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
A0A1S3CC56 ribosome biogenesis protein BRX1 homolog3.9e-4593Show/hide
Query:  MSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNHSMNVSTTFTFSMCNPFIVSFYMCCCFKNYLVKHTMRLREVFNTRKEVIIE
        MSA+EELKLIGNYLKGSRPILTFSSNFDKDVLWKL+KEMIIQKFT SPNHSM VSTTFTFSMCNPFIV FYMCCCFKNYLVK T RLREVFNTRKEVIIE
Subjt:  MSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNHSMNVSTTFTFSMCNPFIVSFYMCCCFKNYLVKHTMRLREVFNTRKEVIIE
A0A5A7SQ25 Ribosome biogenesis protein BRX1-like protein8.0e-1497.67Show/hide
Query:  AMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
        A SAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
Subjt:  AMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
A0A5D3CG95 Ribosome biogenesis protein BRX1-like4.8e-1151.72Show/hide
Query:  IGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNHSMNV---STTFTFSMCNPFIVSFYMCCCFKNYLV
        + A+  MEELKL GN+LKGSRPILTFSSNFDKDV WKL+KEMIIQ F     H  +       F FS+ +  I        F+NY +
Subjt:  IGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNHSMNV---STTFTFSMCNPFIVSFYMCCCFKNYLV
SwissProt top hitse value%identityAlignment
Q3SZZ0 Ribosome biogenesis protein BRX1 homolog2.2e-0543.55Show/hide
Query:  MEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFT---YSPNHSMNVSTTFTFSM
        + ELK+ GN LKGSRP+L+F   FD+   + L+KE++IQ F+   Y P     V   FTF++
Subjt:  MEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFT---YSPNHSMNVSTTFTFSM
Q8UVY2 Ribosome biogenesis protein BRX1 homolog1.0e-0539.51Show/hide
Query:  MEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKF---TYSPNHSMNVSTTFTFSMCNPFIVSFYMCCCFKNYLV
        + ELK+ GN LKGSRPIL+F   FD++  + L+KE++ Q F    Y P     V   FTFS+ +  I        F+NY +
Subjt:  MEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKF---TYSPNHSMNVSTTFTFSMCNPFIVSFYMCCCFKNYLV
Q9C928 Ribosome biogenesis protein BRX1 homolog 21.9e-1247.13Show/hide
Query:  IGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNHSMNV---STTFTFSMCNPFIVSFYMCCCFKNYLV
        + A+ AMEE+KL GN+LKGSRP+LTFSSNFDKD  WKL+KEM+ Q F     H  +       F FS+ +  I        F+NY +
Subjt:  IGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNHSMNV---STTFTFSMCNPFIVSFYMCCCFKNYLV
Q9LE16 Ribosome biogenesis protein BRX1 homolog 12.7e-1144.83Show/hide
Query:  IGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNHSMNV---STTFTFSMCNPFIVSFYMCCCFKNYLV
        + A+  MEELKL GN+LKGSRP+LTFSSNF+ D  WKL+KEM+ Q F     H  +       F FS+ +  I        F+NY +
Subjt:  IGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNHSMNV---STTFTFSMCNPFIVSFYMCCCFKNYLV
Q9VZE6 Ribosome biogenesis protein BRX1 homolog1.0e-0549.21Show/hide
Query:  MEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYS-PNHSMN----VSTTFTFS
        M ELK+ GN L+GSRP+L+F S FD+    KL+KE+ +Q  TYS PNH       V   FTF+
Subjt:  MEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYS-PNHSMN----VSTTFTFS
Arabidopsis top hitse value%identityAlignment
AT1G52930.1 Ribosomal RNA processing Brix domain protein1.3e-1347.13Show/hide
Query:  IGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNHSMNV---STTFTFSMCNPFIVSFYMCCCFKNYLV
        + A+ AMEE+KL GN+LKGSRP+LTFSSNFDKD  WKL+KEM+ Q F     H  +       F FS+ +  I        F+NY +
Subjt:  IGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNHSMNV---STTFTFSMCNPFIVSFYMCCCFKNYLV
AT3G15460.1 Ribosomal RNA processing Brix domain protein1.9e-1244.83Show/hide
Query:  IGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNHSMNV---STTFTFSMCNPFIVSFYMCCCFKNYLV
        + A+  MEELKL GN+LKGSRP+LTFSSNF+ D  WKL+KEM+ Q F     H  +       F FS+ +  I        F+NY +
Subjt:  IGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNHSMNV---STTFTFSMCNPFIVSFYMCCCFKNYLV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACGCTTTGTTCTGTGGTCCTAAACAAAAAGAAAGAATTTCAATGGCAAAGGGTTGTTCTTTTTCTAAGAATAGGTGCAATGAGTGCAATGGAAGAATTGAAGCT
TATAGGGAACTATCTGAAAGGTTCCCGTCCAATTTTGACATTTTCATCGAATTTTGATAAAGATGTCCTCTGGAAGCTTATGAAGGAAATGATTATTCAGAAATTCACAT
ATTCTCCTAATCACAGTATGAATGTTAGTACAACGTTTACATTTTCAATGTGCAACCCTTTCATAGTTTCGTTTTATATGTGTTGTTGCTTCAAGAATTATTTGGTGAAA
CATACTATGAGGCTACGTGAAGTATTTAACACTCGTAAAGAAGTAATTATTGAGGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAACGCTTTGTTCTGTGGTCCTAAACAAAAAGAAAGAATTTCAATGGCAAAGGGTTGTTCTTTTTCTAAGAATAGGTGCAATGAGTGCAATGGAAGAATTGAAGCT
TATAGGGAACTATCTGAAAGGTTCCCGTCCAATTTTGACATTTTCATCGAATTTTGATAAAGATGTCCTCTGGAAGCTTATGAAGGAAATGATTATTCAGAAATTCACAT
ATTCTCCTAATCACAGTATGAATGTTAGTACAACGTTTACATTTTCAATGTGCAACCCTTTCATAGTTTCGTTTTATATGTGTTGTTGCTTCAAGAATTATTTGGTGAAA
CATACTATGAGGCTACGTGAAGTATTTAACACTCGTAAAGAAGTAATTATTGAGGGTTAG
Protein sequenceShow/hide protein sequence
MKTLCSVVLNKKKEFQWQRVVLFLRIGAMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQKFTYSPNHSMNVSTTFTFSMCNPFIVSFYMCCCFKNYLVK
HTMRLREVFNTRKEVIIEG