CuGenDBv2

Gene ID	Pay0016200
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Gag-pro-like protein
Genome location	chr08:27953802..27954632
RNA-Seq Expression	Pay0016200
Synteny	Pay0016200
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR005162 - Retrotransposon gag domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044913.1 uncharacterized protein E6C27_scaffold74G002080 [Cucumis melo var. makuwa]

2.5e-122

80.58

Show/hide

Query:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-
        MGKGKV VDT QSSNPIQDTDD IYPP F PYHMNVPQSQTTQHYVPTNPLYVVPPIV GIEHLEAQAKIQDMGQNENTPAKQKLDVLEERL+ IEGTD 
Subjt:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-

Query:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMA--INNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDM
                            FKVP+FDKYDGSTC RSHLIMYCRKMA  INNDKLLVHCFQD+LTGPASRWYIQLDNAHIH+WKDLADAFLKQYKHNIDM
Subjt:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMA--INNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDM

Query:  APDRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNFLILLLLAKELNMG
        AP+RLDLQRMEKKSSESF EYAQRWRDM  EVQ PL DKEMTSMFMN LRAPFYERMIGNASTNF  ++++ + +  G
Subjt:  APDRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNFLILLLLAKELNMG

KAA0060421.1 uncharacterized protein E6C27_scaffold22G002400 [Cucumis melo var. makuwa]

3.8e-123

80.58

Show/hide

Query:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-
        MGKGKV VDTTQSSNPIQDTDDPIYPP F PYHMNVPQSQTTQHY+PT+PLYVVPPIV G+EHLEAQAKIQDMGQNENT AKQKLDVLEERL+ IEGTD 
Subjt:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-

Query:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMA--INNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDM
                            FKVP+FDKYDGSTC RSHLIMYCRKMA  INNDKLLVHCFQD+LTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDM
Subjt:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMA--INNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDM

Query:  APDRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNFLILLLLAKELNMG
        AP+RLDLQRMEKKSSESF EYAQRW+DM AEVQ PLTDKEMTSMFMN LRAPFYERMIGNASTNF  ++++ + +  G
Subjt:  APDRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNFLILLLLAKELNMG

KAA0067953.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]

1.0e-128

88.59

Show/hide

Query:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-
        MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD 
Subjt:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-

Query:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMAINNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDMAP
                            FKVPKFDKYDGSTCTRSHLIMYCRKMAINNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDMAP
Subjt:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMAINNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDMAP

Query:  DRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNF
        DRLDLQ+MEKKSSESF EYAQRWRDMAAEVQ PLTDKEMTSMFMN LRAPFYERMIG   + F
Subjt:  DRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNF

TYK21788.1 uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa]

2.0e-127

87.45

Show/hide

Query:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-
        MGKGKVLVDT QSSNPIQDTDDPIYPPRFAPYHMNVPQSQT QHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD 
Subjt:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-

Query:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMAINNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDMAP
                            FKVPKF+KYDGSTCTRSHLIMYCRKMAINNDKLLVHCFQD+LTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDMAP
Subjt:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMAINNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDMAP

Query:  DRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNF
        DRLDLQRMEKKSSESF EYAQRWRDMAAEVQ PLTDKEMTSMFMN LRAPFYERMI  A+T +
Subjt:  DRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNF

XP_008465589.1 PREDICTED: uncharacterized protein LOC103503225 [Cucumis melo]

2.8e-121

79.86

Show/hide

Query:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-
        MGKGKV VDT QSSNPIQDTDD IYPP F PYHMNVPQSQT QHYVPTNPLYVVPPIV GIEHLEAQAKIQDMGQNENTPAKQKLDVLEERL+ IEGTD 
Subjt:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-

Query:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMA--INNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDM
                            FKVP+FDKYDGSTC RSHLIMYCRKMA  INNDKLLVHCFQD+LTGPASRWYIQLDNAHIH+WKDLADAFLKQYKHNIDM
Subjt:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMA--INNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDM

Query:  APDRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNFLILLLLAKELNMG
        AP+RLDLQRMEKKSSESF EYAQRW+DM  EVQ PL DKEMTSMFMN LRAPFYERMIGNASTNF  ++++ + +  G
Subjt:  APDRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNFLILLLLAKELNMG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0H8 Uncharacterized protein

1.3e-121

79.86

Show/hide

Query:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-
        MGKGK +VDT QSSNPIQDTDDPIYPP F PYH+NVPQSQTTQHYVPTNPLYVVPPI+ GIEHLEAQAKIQDM QNENTPAKQKLDVLEERL+ IE TD 
Subjt:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-

Query:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMA--INNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDM
                            FKVP+FDKYDGSTC RSHLIMYCRKMA  INNDKLLVHCFQD+LT PASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDM
Subjt:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMA--INNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDM

Query:  APDRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNFLILLLLAKELNMG
        APDRLDLQR+EKKSSESF EYAQRWRDM AEVQ PLTDKEMTSMFMN LRAPFYERMIGNASTNF  ++++ + +  G
Subjt:  APDRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNFLILLLLAKELNMG

A0A5A7V3W7 Retrotrans_gag domain-containing protein

1.9e-123

80.58

Show/hide

Query:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-
        MGKGKV VDTTQSSNPIQDTDDPIYPP F PYHMNVPQSQTTQHY+PT+PLYVVPPIV G+EHLEAQAKIQDMGQNENT AKQKLDVLEERL+ IEGTD 
Subjt:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-

Query:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMA--INNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDM
                            FKVP+FDKYDGSTC RSHLIMYCRKMA  INNDKLLVHCFQD+LTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDM
Subjt:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMA--INNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDM

Query:  APDRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNFLILLLLAKELNMG
        AP+RLDLQRMEKKSSESF EYAQRW+DM AEVQ PLTDKEMTSMFMN LRAPFYERMIGNASTNF  ++++ + +  G
Subjt:  APDRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNFLILLLLAKELNMG

A0A5A7VIM6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein

5.1e-129

88.59

Show/hide

Query:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-
        MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD 
Subjt:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-

Query:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMAINNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDMAP
                            FKVPKFDKYDGSTCTRSHLIMYCRKMAINNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDMAP
Subjt:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMAINNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDMAP

Query:  DRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNF
        DRLDLQ+MEKKSSESF EYAQRWRDMAAEVQ PLTDKEMTSMFMN LRAPFYERMIG   + F
Subjt:  DRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNF

A0A5D3CXD6 Retrotrans_gag domain-containing protein

1.2e-122

80.58

Show/hide

Query:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-
        MGKGKV VDT QSSNPIQDTDD IYPP F PYHMNVPQSQTTQHYVPTNPLYVVPPIV GIEHLEAQAKIQDMGQNENTPAKQKLDVLEERL+ IEGTD 
Subjt:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-

Query:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMA--INNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDM
                            FKVP+FDKYDGSTC RSHLIMYCRKMA  INNDKLLVHCFQD+LTGPASRWYIQLDNAHIH+WKDLADAFLKQYKHNIDM
Subjt:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMA--INNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDM

Query:  APDRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNFLILLLLAKELNMG
        AP+RLDLQRMEKKSSESF EYAQRWRDM  EVQ PL DKEMTSMFMN LRAPFYERMIGNASTNF  ++++ + +  G
Subjt:  APDRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNFLILLLLAKELNMG

A0A5D3DEB3 Retrotrans_gag domain-containing protein

9.5e-128

87.45

Show/hide

Query:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-
        MGKGKVLVDT QSSNPIQDTDDPIYPPRFAPYHMNVPQSQT QHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD 
Subjt:  MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTD-

Query:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMAINNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDMAP
                            FKVPKF+KYDGSTCTRSHLIMYCRKMAINNDKLLVHCFQD+LTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDMAP
Subjt:  --------------------FKVPKFDKYDGSTCTRSHLIMYCRKMAINNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDMAP

Query:  DRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNF
        DRLDLQRMEKKSSESF EYAQRWRDMAAEVQ PLTDKEMTSMFMN LRAPFYERMI  A+T +
Subjt:  DRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTSMFMNILRAPFYERMIGNASTNF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGGAAAGGAAAAGTCCTTGTAGATACAACACAATCAAGCAATCCAATTCAAGACACAGATGATCCCATTTATCCTCCAAGATTCGCTCCATACCACATGAATGTTCC
GCAGTCTCAAACCACTCAACACTATGTTCCTACGAATCCGCTGTACGTTGTTCCACCCATTGTCCAAGGTATAGAACATTTGGAAGCTCAGGCTAAAATTCAAGACATGG
GACAAAACGAGAACACTCCGGCTAAGCAAAAGTTAGATGTTTTGGAAGAAAGGTTACAAGAAATTGAAGGGACTGATTTTAAAGTTCCTAAATTCGATAAATATGATGGA
TCAACGTGTACAAGGAGTCATCTTATAATGTACTGCAGAAAGATGGCAATTAATAATGATAAATTGTTAGTCCATTGCTTCCAGGATAACTTGACTGGTCCAGCTAGTCG
ATGGTATATTCAATTAGATAATGCACACATTCACGTTTGGAAGGACTTAGCTGATGCATTTCTAAAGCAATACAAACACAACATTGATATGGCTCCAGACCGTTTAGACT
TGCAAAGGATGGAGAAGAAGAGTTCGGAAAGCTTCAATGAATATGCTCAACGATGGAGAGATATGGCTGCCGAGGTTCAACAACCGTTAACAGACAAAGAAATGACATCT
ATGTTTATGAATATCTTGCGGGCTCCATTCTATGAGCGAATGATTGGTAATGCATCAACAAATTTTTTGATATTATTGTTATTGGCGAAAGAATTGAATATGGGATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQGIEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTDFKVPKFDKYDG
STCTRSHLIMYCRKMAINNDKLLVHCFQDNLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDMAPDRLDLQRMEKKSSESFNEYAQRWRDMAAEVQQPLTDKEMTS
MFMNILRAPFYERMIGNASTNFLILLLLAKELNMG

Pay0016200 (gene) of Melon (Payzawat) v1 genome