CuGenDBv2

Gene ID	Pay0016228
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Genome location	chr07:13463155..13472600
RNA-Seq Expression	Pay0016228
Synteny	Pay0016228
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0067563.1 uncharacterized protein E6C27_scaffold485G00260 [Cucumis melo var. makuwa]

2.6e-128

82.77

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Query:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP
        MNLIEK GLSKTI +VGS YP+LI++FIVNL ADFNDPSS DYQ VHIRGFKFTIS T+INGFLGN VSINFSPSSPST+VLASVL GGTLSSW V+GIP
Subjt:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP

Query:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS
        A+ALSV YAILHKIGIA+WFPSSH SSVS ALGTFLY I NDDRVD G FIYNQLLRHVGSFGVKL IALPRFFS LLLHLN AVLTTSDAPSPDPKTLS
Subjt:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS

Query:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE---------ELASRILNSLTAESRSLSTAISLMYERRLEIDSLIRHLKTFAPSSSRGDSSAD
        LSYRLFQG HVPDIDH+VH SRGPR+FDT DWDE         ELA RILNSL  ESRSL+TAISLM ERRLEIDSLIRHLKTFAPSSSRGD + D
Subjt:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE---------ELASRILNSLTAESRSLSTAISLMYERRLEIDSLIRHLKTFAPSSSRGDSSAD

TYJ96199.1 uncharacterized protein E5676_scaffold261G00310 [Cucumis melo var. makuwa]

1.8e-124

96.58

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Query:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP
        +NLIEKAGLSKTISNVGSIYPKLI+KFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGG LS WLVDGIP
Subjt:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP

Query:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS
        AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHL  AVLTTSDAPSPDPKTLS
Subjt:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS

Query:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE
        LSYRLFQ SHVPDIDHDVHPSRGPR+FDTTDWDE
Subjt:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE

TYK03159.1 uncharacterized protein E5676_scaffold11G00350 [Cucumis melo var. makuwa]

1.1e-129

84.46

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Query:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP
        MNLIEKAGLSKTIS+VG  YP+LI++ IVNL A FND SS DYQTVHIR FKFTISPTVINGFLGN VSINFSPSSPSTDVLASVLSGGTLSSW V+GIP
Subjt:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP

Query:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS
        A+ALS+ YAILHKIGIANWFPSSHA SV  AL TFLY ICNDDRVDAGAFIYNQLLRHVGSFGVKL IALP+FF  LLLHLN AVLTTS+AP PDPKTLS
Subjt:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS

Query:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE---------ELASRILNSLTAESRSLSTAISLMYERRLEIDSLIRHLKTFAPSSSRGDSSAD
        LSYRLFQGSHVPDIDHDVHPSRGPR+FDTTDWDE         ELASRILNS  AESRSLST ISLM ER LEIDSLIRHLKTFAPSSSRGD SAD
Subjt:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE---------ELASRILNSLTAESRSLSTAISLMYERRLEIDSLIRHLKTFAPSSSRGDSSAD

XP_008441663.1 PREDICTED: uncharacterized protein LOC103485747 [Cucumis melo]

1.5e-128

84.46

Show/hide

Query:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP
        MNLIEKAGLSKTIS VG  YP+LI++ IVNL A FND SS DYQTVHIR FKFTISPTVINGFLGN VSINFSPSSPSTDVLASVLSG TLSSW V+GIP
Subjt:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP

Query:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS
        A+ALSV YAILHKIGIANWFPSSHA SV  AL TFLY ICNDDRVDAGAFIYNQLLRHVGSFGVKL IALP+FF  LLLHLN AVLTTS+AP PDPKTLS
Subjt:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS

Query:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE---------ELASRILNSLTAESRSLSTAISLMYERRLEIDSLIRHLKTFAPSSSRGDSSAD
        LSYRLFQGSHVPDIDHDVHPSRGPR+FDTTDWDE         ELASRILNS  AESRSLST ISLM ER LEIDSLIRHLKTFAPSSSRGD SAD
Subjt:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE---------ELASRILNSLTAESRSLSTAISLMYERRLEIDSLIRHLKTFAPSSSRGDSSAD

XP_008464590.1 PREDICTED: uncharacterized protein LOC103502436 [Cucumis melo]

1.8e-124

96.58

Show/hide

Query:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP
        +NLIEKAGLSKTISNVGSIYPKLI+KFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGG LS WLVDGIP
Subjt:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP

Query:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS
        AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHL  AVLTTSDAPSPDPKTLS
Subjt:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS

Query:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE
        LSYRLFQ SHVPDIDHDVHPSRGPR+FDTTDWDE
Subjt:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B3X9 uncharacterized protein LOC103485747

7.4e-129

84.46

Show/hide

Query:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP
        MNLIEKAGLSKTIS VG  YP+LI++ IVNL A FND SS DYQTVHIR FKFTISPTVINGFLGN VSINFSPSSPSTDVLASVLSG TLSSW V+GIP
Subjt:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP

Query:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS
        A+ALSV YAILHKIGIANWFPSSHA SV  AL TFLY ICNDDRVDAGAFIYNQLLRHVGSFGVKL IALP+FF  LLLHLN AVLTTS+AP PDPKTLS
Subjt:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS

Query:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE---------ELASRILNSLTAESRSLSTAISLMYERRLEIDSLIRHLKTFAPSSSRGDSSAD
        LSYRLFQGSHVPDIDHDVHPSRGPR+FDTTDWDE         ELASRILNS  AESRSLST ISLM ER LEIDSLIRHLKTFAPSSSRGD SAD
Subjt:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE---------ELASRILNSLTAESRSLSTAISLMYERRLEIDSLIRHLKTFAPSSSRGDSSAD

A0A5A7UAG4 Uncharacterized protein

7.4e-129

84.46

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Query:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP
        MNLIEKAGLSKTIS VG  YP+LI++ IVNL A FND SS DYQTVHIR FKFTISPTVINGFLGN VSINFSPSSPSTDVLASVLSG TLSSW V+GIP
Subjt:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP

Query:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS
        A+ALSV YAILHKIGIANWFPSSHA SV  AL TFLY ICNDDRVDAGAFIYNQLLRHVGSFGVKL IALP+FF  LLLHLN AVLTTS+AP PDPKTLS
Subjt:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS

Query:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE---------ELASRILNSLTAESRSLSTAISLMYERRLEIDSLIRHLKTFAPSSSRGDSSAD
        LSYRLFQGSHVPDIDHDVHPSRGPR+FDTTDWDE         ELASRILNS  AESRSLST ISLM ER LEIDSLIRHLKTFAPSSSRGD SAD
Subjt:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE---------ELASRILNSLTAESRSLSTAISLMYERRLEIDSLIRHLKTFAPSSSRGDSSAD

A0A5A7VHK0 Uncharacterized protein

1.3e-128

82.77

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Query:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP
        MNLIEK GLSKTI +VGS YP+LI++FIVNL ADFNDPSS DYQ VHIRGFKFTIS T+INGFLGN VSINFSPSSPST+VLASVL GGTLSSW V+GIP
Subjt:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP

Query:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS
        A+ALSV YAILHKIGIA+WFPSSH SSVS ALGTFLY I NDDRVD G FIYNQLLRHVGSFGVKL IALPRFFS LLLHLN AVLTTSDAPSPDPKTLS
Subjt:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS

Query:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE---------ELASRILNSLTAESRSLSTAISLMYERRLEIDSLIRHLKTFAPSSSRGDSSAD
        LSYRLFQG HVPDIDH+VH SRGPR+FDT DWDE         ELA RILNSL  ESRSL+TAISLM ERRLEIDSLIRHLKTFAPSSSRGD + D
Subjt:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE---------ELASRILNSLTAESRSLSTAISLMYERRLEIDSLIRHLKTFAPSSSRGDSSAD

A0A5D3BB19 Uncharacterized protein

8.5e-125

96.58

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Query:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP
        +NLIEKAGLSKTISNVGSIYPKLI+KFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGG LS WLVDGIP
Subjt:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP

Query:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS
        AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHL  AVLTTSDAPSPDPKTLS
Subjt:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS

Query:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE
        LSYRLFQ SHVPDIDHDVHPSRGPR+FDTTDWDE
Subjt:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE

A0A5D3BYK9 Uncharacterized protein

5.2e-130

84.46

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Query:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP
        MNLIEKAGLSKTIS+VG  YP+LI++ IVNL A FND SS DYQTVHIR FKFTISPTVINGFLGN VSINFSPSSPSTDVLASVLSGGTLSSW V+GIP
Subjt:  MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIP

Query:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS
        A+ALS+ YAILHKIGIANWFPSSHA SV  AL TFLY ICNDDRVDAGAFIYNQLLRHVGSFGVKL IALP+FF  LLLHLN AVLTTS+AP PDPKTLS
Subjt:  AIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLS

Query:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE---------ELASRILNSLTAESRSLSTAISLMYERRLEIDSLIRHLKTFAPSSSRGDSSAD
        LSYRLFQGSHVPDIDHDVHPSRGPR+FDTTDWDE         ELASRILNS  AESRSLST ISLM ER LEIDSLIRHLKTFAPSSSRGD SAD
Subjt:  LSYRLFQGSHVPDIDHDVHPSRGPRMFDTTDWDE---------ELASRILNSLTAESRSLSTAISLMYERRLEIDSLIRHLKTFAPSSSRGDSSAD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAATCTGATTGAGAAGGCTGGTTTGTCTAAAACTATTTCGAATGTGGGCTCGATTTATCCTAAACTTATTAAAAAATTTATAGTTAATTTGTCGGCTGATTTCAATGA
CCCAAGTAGCCCGGATTATCAGACGGTTCATATTAGGGGTTTCAAATTTACAATTTCCCCTACTGTGATAAATGGTTTTCTGGGAAATGATGTTTCAATTAACTTTTCTC
CATCGTCCCCGTCAACTGATGTTTTGGCTTCTGTATTGTCTGGAGGGACATTATCCTCATGGCTTGTGGATGGTATACCTGCAATTGCTCTAAGTGTTAATTATGCCATA
CTGCATAAGATTGGTATTGCCAATTGGTTTCCTTCATCCCATGCCTCTAGTGTTTCTACTGCGTTAGGCACTTTCTTGTATTGCATCTGCAATGATGACAGGGTAGACGC
TGGTGCATTTATCTACAATCAGCTGCTAAGGCATGTTGGATCATTTGGGGTCAAGCTTTCGATTGCTCTACCAAGGTTCTTTTCTGATTTACTGCTACACTTAAATACTG
CTGTATTGACCACCTCAGACGCACCTAGCCCTGATCCTAAGACATTATCACTGAGCTACAGACTCTTTCAAGGCAGTCATGTGCCTGACATAGATCATGATGTGCATCCA
TCTCGAGGGCCTCGAATGTTTGATACGACGGACTGGGATGAAGAGTTGGCTTCCAGAATTCTTAACTCTCTTACAGCCGAGTCTCGTTCGCTATCTACTGCCATTAGTCT
GATGTATGAACGACGTTTGGAAATCGATTCTCTTATTCGTCATCTGAAGACTTTTGCTCCATCCTCAAGTCGAGGGGACTCTAGTGCTGATTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MNLIEKAGLSKTISNVGSIYPKLIKKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGTLSSWLVDGIPAIALSVNYAI
LHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLHLNTAVLTTSDAPSPDPKTLSLSYRLFQGSHVPDIDHDVHP
SRGPRMFDTTDWDEELASRILNSLTAESRSLSTAISLMYERRLEIDSLIRHLKTFAPSSSRGDSSAD

Pay0016228 (gene) of Melon (Payzawat) v1 genome