CuGenDBv2

Gene ID	Pay0016247
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	INO80 complex subunit C
Genome location	chr05:20247992..20263810
RNA-Seq Expression	Pay0016247
Synteny	Pay0016247
Gene Ontology terms	GO:0006338 - chromatin remodeling (biological process) GO:0006468 - protein phosphorylation (biological process) GO:0031011 - Ino80 complex (cellular component) GO:0004672 - protein kinase activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR013272 - Vps72/YL1, C-terminal IPR029525 - INO80 complex, subunit Ies6

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152811.1 INO80 complex subunit C isoform X2 [Cucumis sativus]

1.5e-64

98.39

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

XP_008441777.1 PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo]

4.7e-66

100

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

XP_022144563.1 INO80 complex subunit C isoform X1 [Momordica charantia]

9.8e-64

95.16

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+N+SPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

XP_031736376.1 INO80 complex subunit C isoform X1 [Cucumis sativus]

1.5e-64

98.39

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

XP_038889510.1 INO80 complex subunit C isoform X1 [Benincasa hispida]

1.8e-65

99.19

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJN6 YL1_C domain-containing protein

7.3e-65

98.39

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

A0A1S3B479 INO80 complex subunit C isoform X1

2.3e-66

100

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

A0A6J1CRZ9 INO80 complex subunit C isoform X1

4.7e-64

95.16

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+N+SPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

A0A6J1FBP9 INO80 complex subunit C isoform X1

6.2e-64

96.77

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYS DEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

A0A6J1HLV4 INO80 complex subunit C isoform X1

6.2e-64

96.77

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYS DEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

SwissProt top hits

e value

%identity

Alignment

P32617 Chromatin-remodeling complex subunit IES6

1.0e-07

37.31

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Query:  YVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK-VIRSLPNEYVQRYLAMRNAAVVLR
        Y ++E+PPS+ P K+ CD+TG +  Y  P   +RY NA+I++ +++ +     Q YL +R A  VL+
Subjt:  YVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK-VIRSLPNEYVQRYLAMRNAAVVLR

Q5BJY3 INO80 complex subunit C

1.9e-14

40.66

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Query:  RGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
        + R WK+LKQIL AE    +  ++PNY +I++PPS  P K+  D++G  A Y DP++ LR++  + F  IR LP++ V  YL +R A  ++
Subjt:  RGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Q6PI98 INO80 complex subunit C

1.9e-14

40.66

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Query:  RGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
        + R WK+LKQIL +E    +  ++PNY +I++PPS  P K+  D++G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  ++
Subjt:  RGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Q8BHA0 INO80 complex subunit C

5.1e-15

42.86

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Query:  RGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
        + R WK+LKQIL AE    +  ++PNY +I++PPS  P K+  DI+G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  ++
Subjt:  RGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Q9UTE8 Chromatin-remodeling complex subunit ies6

1.6e-13

41.24

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Query:  PKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
        P  +++ R  ++L+QI+Q +   N  P + +Y +IE+PPS+ P  + CD+TG  A Y DP+T LRY N +I+ +IR LP+   Q YL +R++ VVL+
Subjt:  PKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR

Arabidopsis top hits

e value

%identity

Alignment

AT2G36740.1 sequence-specific DNA binding transcription factors;DNA binding;DNA binding

5.4e-04

54.29

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Query:  HPCKRICDITGYEAPYYDPRTTLRYANADIFKVIR
        +P K +C ITG  A Y DP+T L YA  D FK IR
Subjt:  HPCKRICDITGYEAPYYDPRTTLRYANADIFKVIR

AT4G38495.1 CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

5.4e-44

65.32

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME E++EA++V+   L+FK+ Q YEKYPK QS  R WKHLKQILQAEN+ +  PD P YVNIESPPS  PCKR+CDITGYEAPY DPRT LRYANA +F+
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
         +RSL ++ V +YL++RNAAVVL+
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

Sequences

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CDS sequence

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ATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGATCCACCTTAATTTCAAACGAATTCAAATGTACGAAAAGTATCCTAAAGGCCAATCTAGAGGCAGGCACTG
GAAACATTTGAAGCAAATTCTTCAAGCCGAGAACTATAACAATTACTCCCCTGATGAACCCAACTATGTTAATATTGAGTCACCTCCCTCAATGCATCCATGCAAGAGAA
TTTGTGATATAACAGGATATGAGGCACCATACTATGATCCTAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTACGTC
CAGAGGTATTTGGCCATGAGAAATGCAGCGGTAGTTTTAAGGTGA

mRNA sequence

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GTTCCCTTCTTTCACCTCTCACCACGCGTGGCAAGGCAGTACGACCGGTCAATTGAATCGGTGATTTTGCAGGCTGCCGCTATGGACTAATCGTTAGGGTTTCTGTTTAA
CCTTTGAATATCAAAAGTATTTCAGAAATCAGAAGACATTTAATTCAGTATTAAACAAGAGTTTATTAAGATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGA
TCCACCTTAATTTCAAACGAATTCAAATGTACGAAAAGTATCCTAAAGGCCAATCTAGAGGCAGGCACTGGAAACATTTGAAGCAAATTCTTCAAGCCGAGAACTATAAC
AATTACTCCCCTGATGAACCCAACTATGTTAATATTGAGTCACCTCCCTCAATGCATCCATGCAAGAGAATTTGTGATATAACAGGATATGAGGCACCATACTATGATCC
TAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTACGTCCAGAGGTATTTGGCCATGAGAAATGCAGCGGTAGTTTTAA
GGTGAAGATATACAACACTTCTGTCGTCGTCGACTTGCAACCCTTCGAGGATACGAAGTGAAACCATTAAGCTTTCCATGTGGTTGAAGATGCAAAGAGAAACCTGTCAA
GTAAGCTCAAAATGTATCATATGTCTATTTATTCTATCATTTTGTGTATTTACTTGTCTTTCCAATTCATGTTCGACTTGGTATTTGTTAGCAAAAGTTGAGTCGGTTAC
TTAGAAATCTCAAGGCTATCAAACAACCCTAATTGGATTGTAGTTGAGAAAAATTTAAGGTATATTTACGATTTTTTAAGAAATTGACGTGTTTGATAACTATTTTTATT
TTTCGTTTCCAAATTTTAATAAATGTTTCTAAAAATTGGATAAAAATTAAGAATGTTT

Protein sequence

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MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYV
QRYLAMRNAAVVLR

Pay0016247 (gene) of Melon (Payzawat) v1 genome