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Pay0016257 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0016257
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionPol protein
Genome locationchr08:20198590..20199630
RNA-Seq ExpressionPay0016257
SyntenyPay0016257
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033144.1 reverse transcriptase [Cucumis melo var. makuwa]2.7e-2839.13Show/hide
Query:  MDFITGLLRTLKGYIEIWVVIDRLTKSAHFILGKSSYT--------------------------------------------------------------
        MDFITGLLRTLKGY  IWVV+DRLTKSAHFI GKS+YT                                                              
Subjt:  MDFITGLLRTLKGYIEIWVVIDRLTKSAHFILGKSSYT--------------------------------------------------------------

Query:  ------------------------------------------AIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLV
                                                  A+HD+FHVSMLRKYV   T VVDFE L I ENLSYE+ P              GI+LV
Subjt:  ------------------------------------------AIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLV

Query:  KVLWPNHGVEEATWEREDDMRAQYPELFLD
        KVLW NHGVEEATWERE+D+RAQYP+LF D
Subjt:  KVLWPNHGVEEATWEREDDMRAQYPELFLD

KAA0054128.1 pol protein [Cucumis melo var. makuwa]4.7e-2560Show/hide
Query:  VIDRLTKSAHFILGKSSYTAIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLVKVLWPNHGVEEATWEREDDMRAQ
        ++ R+   A+ +    ++ A+HD+FHVSMLRKYV   T VVDFESL INENLSYEE P              GI+LVKVLW NHGVEEATWEREDDMRAQ
Subjt:  VIDRLTKSAHFILGKSSYTAIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLVKVLWPNHGVEEATWEREDDMRAQ

Query:  YPELF
        YP+LF
Subjt:  YPELF

TYK05492.1 pol protein [Cucumis melo var. makuwa]8.6e-2760Show/hide
Query:  YIEIWVVIDRLTKSAHFILGKSSYTAIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLVKVLWPNHGVEEATWERE
        ++E + +++R+   A+ ++   +++A+HDLFHVSMLRKYV YSTRVVDFESLHINENLSYEE P              GISLVKVLWPNHG +E+TWERE
Subjt:  YIEIWVVIDRLTKSAHFILGKSSYTAIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLVKVLWPNHGVEEATWERE

Query:  DDMRA
        DDMRA
Subjt:  DDMRA

TYK29810.1 pol protein [Cucumis melo var. makuwa]4.7e-2558.88Show/hide
Query:  VIDRLTKSAHFILGKSSYTAIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLVKVLWPNHGVEEATWEREDDMRAQ
        +++R+   A+ +    S++A+HD+FHVSMLRKY P  T VVD E L I+ENL+YEEHP              GISLVKVLW NHGVEEATWERE+DMRAQ
Subjt:  VIDRLTKSAHFILGKSSYTAIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLVKVLWPNHGVEEATWEREDDMRAQ

Query:  YPELFLD
        YPELF D
Subjt:  YPELFLD

XP_016899545.1 PREDICTED: uncharacterized protein LOC107990333 [Cucumis melo]1.7e-4379.66Show/hide
Query:  MDFITGLLRTLKGYIEIWVVIDRLTKSAHFILGKSSYTAIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLVKVLW
        MDFITG  RTLKGYIEIWVVIDRLTKS HFIL KSSYT IHDLFHVSMLRKYV YSTRVVDFESLHINENLSYEE P              GISLVKVLW
Subjt:  MDFITGLLRTLKGYIEIWVVIDRLTKSAHFILGKSSYTAIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLVKVLW

Query:  PNHGVEEATWEREDDMRA
        PNHG +E+TWEREDDMRA
Subjt:  PNHGVEEATWEREDDMRA

TrEMBL top hitse value%identityAlignment
A0A1S4DV09 uncharacterized protein LOC1079903338.4e-4479.66Show/hide
Query:  MDFITGLLRTLKGYIEIWVVIDRLTKSAHFILGKSSYTAIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLVKVLW
        MDFITG  RTLKGYIEIWVVIDRLTKS HFIL KSSYT IHDLFHVSMLRKYV YSTRVVDFESLHINENLSYEE P              GISLVKVLW
Subjt:  MDFITGLLRTLKGYIEIWVVIDRLTKSAHFILGKSSYTAIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLVKVLW

Query:  PNHGVEEATWEREDDMRA
        PNHG +E+TWEREDDMRA
Subjt:  PNHGVEEATWEREDDMRA

A0A5A7SPJ8 Reverse transcriptase1.3e-2839.13Show/hide
Query:  MDFITGLLRTLKGYIEIWVVIDRLTKSAHFILGKSSYT--------------------------------------------------------------
        MDFITGLLRTLKGY  IWVV+DRLTKSAHFI GKS+YT                                                              
Subjt:  MDFITGLLRTLKGYIEIWVVIDRLTKSAHFILGKSSYT--------------------------------------------------------------

Query:  ------------------------------------------AIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLV
                                                  A+HD+FHVSMLRKYV   T VVDFE L I ENLSYE+ P              GI+LV
Subjt:  ------------------------------------------AIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLV

Query:  KVLWPNHGVEEATWEREDDMRAQYPELFLD
        KVLW NHGVEEATWERE+D+RAQYP+LF D
Subjt:  KVLWPNHGVEEATWEREDDMRAQYPELFLD

A0A5A7UGF9 Pol protein2.3e-2560Show/hide
Query:  VIDRLTKSAHFILGKSSYTAIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLVKVLWPNHGVEEATWEREDDMRAQ
        ++ R+   A+ +    ++ A+HD+FHVSMLRKYV   T VVDFESL INENLSYEE P              GI+LVKVLW NHGVEEATWEREDDMRAQ
Subjt:  VIDRLTKSAHFILGKSSYTAIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLVKVLWPNHGVEEATWEREDDMRAQ

Query:  YPELF
        YP+LF
Subjt:  YPELF

A0A5D3C2R5 Pol protein4.2e-2760Show/hide
Query:  YIEIWVVIDRLTKSAHFILGKSSYTAIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLVKVLWPNHGVEEATWERE
        ++E + +++R+   A+ ++   +++A+HDLFHVSMLRKYV YSTRVVDFESLHINENLSYEE P              GISLVKVLWPNHG +E+TWERE
Subjt:  YIEIWVVIDRLTKSAHFILGKSSYTAIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLVKVLWPNHGVEEATWERE

Query:  DDMRA
        DDMRA
Subjt:  DDMRA

A0A5D3E2L4 Pol protein2.3e-2558.88Show/hide
Query:  VIDRLTKSAHFILGKSSYTAIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLVKVLWPNHGVEEATWEREDDMRAQ
        +++R+   A+ +    S++A+HD+FHVSMLRKY P  T VVD E L I+ENL+YEEHP              GISLVKVLW NHGVEEATWERE+DMRAQ
Subjt:  VIDRLTKSAHFILGKSSYTAIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHP--------------GISLVKVLWPNHGVEEATWEREDDMRAQ

Query:  YPELFLD
        YPELF D
Subjt:  YPELFLD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTTCATTACAGGACTGCTTAGGACTCTGAAGGGCTATATAGAGATTTGGGTTGTTATTGACAGGCTCACGAAGTCAGCTCACTTTATTCTAGGGAAATCCTCTTA
CACTGCTATTCATGATTTATTCCATGTCTCTATGCTGAGGAAGTATGTCCCATACTCGACACGTGTAGTTGACTTTGAGTCGTTGCACATTAATGAGAACTTGAGCTATG
AGGAGCACCCAGGGATTTCACTGGTCAAAGTTCTTTGGCCAAACCATGGAGTTGAAGAGGCCACATGGGAGAGGGAGGATGACATGAGAGCCCAGTACCCTGAGCTGTTC
CTGGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACTTCATTACAGGACTGCTTAGGACTCTGAAGGGCTATATAGAGATTTGGGTTGTTATTGACAGGCTCACGAAGTCAGCTCACTTTATTCTAGGGAAATCCTCTTA
CACTGCTATTCATGATTTATTCCATGTCTCTATGCTGAGGAAGTATGTCCCATACTCGACACGTGTAGTTGACTTTGAGTCGTTGCACATTAATGAGAACTTGAGCTATG
AGGAGCACCCAGGGATTTCACTGGTCAAAGTTCTTTGGCCAAACCATGGAGTTGAAGAGGCCACATGGGAGAGGGAGGATGACATGAGAGCCCAGTACCCTGAGCTGTTC
CTGGATTAG
Protein sequenceShow/hide protein sequence
MDFITGLLRTLKGYIEIWVVIDRLTKSAHFILGKSSYTAIHDLFHVSMLRKYVPYSTRVVDFESLHINENLSYEEHPGISLVKVLWPNHGVEEATWEREDDMRAQYPELF
LD