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Pay0016343 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0016343
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRetrotransposon protein
Genome locationchr01:12170754..12172977
RNA-Seq ExpressionPay0016343
SyntenyPay0016343
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048191.1 retrotransposon protein [Cucumis melo var. makuwa]6.6e-6470.27Show/hide
Query:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQ---------NCLGALDGT
        TRGGLEATQYVDVEEM AI LHIVAHDVKN+VARR+FARSD TVSRH NVVLNAVLR+HEILLKQPD VTHSCSHEKWRWFQ           + ALDGT
Subjt:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQ---------NCLGALDGT

Query:  HIKVN-----------------------------YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
        HIKVN                             +IFVMPGWEGSASDSRVLRDVVSRP GLKVPKGYYYLCDA YLN EGF AP
Subjt:  HIKVN-----------------------------YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

KAA0050107.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]5.8e-6875.57Show/hide
Query:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN----
        T+GGLEATQYVDVEEMVAI LHIVAHDVKN+VARR+FARS ETVSRH N VLNAVLRLHEILLKQPDPVTHSCSHEK+RWFQNCLGAL GTHIKVN    
Subjt:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN----

Query:  -------------------------YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
                                 +IFVMPGWEGSASDSRVLRD VSRPT LKVPKGYYYLCDAGY NAEGF AP
Subjt:  -------------------------YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]3.9e-6472.73Show/hide
Query:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN----
        T+GGLEATQYVDVEEM+AI LHIVAHDVKN+V RR+FARS ETVSRH     NAVLRLHEILLKQPDPVT+SCSHEKWRWFQ CLGALDGTHIKVN    
Subjt:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN----

Query:  -------------------------YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
                                 +IFVMPGWEGSASDSRVLRD VSR TGLKVPKGYYYLCDAGY NAEGF AP
Subjt:  -------------------------YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

TYJ96934.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]3.4e-6079.59Show/hide
Query:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNYIFV
        TRGGLEATQYV VEEMV I LHI+AH+VKN+VARR+F RS ETVSRH N VLN VLRLHEILLKQPD VTHSCSHEKWRWFQNC+GALDGTHIKVN    
Subjt:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNYIFV

Query:  MPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
              SASD RVLRD VSRPTGLKVPKGYYYLCDA Y NAEGF  P
Subjt:  MPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

XP_008463037.1 PREDICTED: uncharacterized protein LOC103501276 [Cucumis melo]1.5e-7683.52Show/hide
Query:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN----
        TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN    
Subjt:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN----

Query:  -------------------------YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
                                 YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
Subjt:  -------------------------YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

TrEMBL top hitse value%identityAlignment
A0A1S3CJV8 uncharacterized protein LOC1035012767.4e-7783.52Show/hide
Query:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN----
        TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN    
Subjt:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN----

Query:  -------------------------YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
                                 YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
Subjt:  -------------------------YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

A0A5A7U3R2 Retrotransposon protein3.2e-6470.27Show/hide
Query:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQ---------NCLGALDGT
        TRGGLEATQYVDVEEM AI LHIVAHDVKN+VARR+FARSD TVSRH NVVLNAVLR+HEILLKQPD VTHSCSHEKWRWFQ           + ALDGT
Subjt:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQ---------NCLGALDGT

Query:  HIKVN-----------------------------YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
        HIKVN                             +IFVMPGWEGSASDSRVLRDVVSRP GLKVPKGYYYLCDA YLN EGF AP
Subjt:  HIKVN-----------------------------YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

A0A5A7U6W3 Putative nuclease HARBI12.8e-6875.57Show/hide
Query:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN----
        T+GGLEATQYVDVEEMVAI LHIVAHDVKN+VARR+FARS ETVSRH N VLNAVLRLHEILLKQPDPVTHSCSHEK+RWFQNCLGAL GTHIKVN    
Subjt:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN----

Query:  -------------------------YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
                                 +IFVMPGWEGSASDSRVLRD VSRPT LKVPKGYYYLCDAGY NAEGF AP
Subjt:  -------------------------YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

A0A5A7VG45 Retrotransposon protein1.9e-6472.73Show/hide
Query:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN----
        T+GGLEATQYVDVEEM+AI LHIVAHDVKN+V RR+FARS ETVSRH     NAVLRLHEILLKQPDPVT+SCSHEKWRWFQ CLGALDGTHIKVN    
Subjt:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN----

Query:  -------------------------YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
                                 +IFVMPGWEGSASDSRVLRD VSR TGLKVPKGYYYLCDAGY NAEGF AP
Subjt:  -------------------------YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

A0A5D3BD50 Putative nuclease HARBI11.7e-6079.59Show/hide
Query:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNYIFV
        TRGGLEATQYV VEEMV I LHI+AH+VKN+VARR+F RS ETVSRH N VLN VLRLHEILLKQPD VTHSCSHEKWRWFQNC+GALDGTHIKVN    
Subjt:  TRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNYIFV

Query:  MPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
              SASD RVLRD VSRPTGLKVPKGYYYLCDA Y NAEGF  P
Subjt:  MPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein2.4e-1126.26Show/hide
Query:  MSITKFFLNLNKWLTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPD-------PVTHSCSHEKWR
        MS+  F    N   T   L+ T  + +EE VA+ L I  H+   +     F R+ ETV R    VL A   L    ++ P        P         W 
Subjt:  MSITKFFLNLNKWLTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPD-------PVTHSCSHEKWR

Query:  WFQNCLGALDGTHI-----------------------------KVNYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKG-YYYLCDAGYLNAEGFFAP
        +F   +GA+DGTH+                             K+ + ++  G  GS  D+ VL+      +   +P    YYL D+GY N +G  AP
Subjt:  WFQNCLGALDGTHI-----------------------------KVNYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKG-YYYLCDAGYLNAEGFFAP

AT5G28730.1 unknown protein8.5e-0931.25Show/hide
Query:  GLEATQYVDVEEMVAILLHIVA-HDVKNKVARRYFARSDETVSRHLNVVLNAVLRLH-EILLKQPDPVTHSCSH------EKWRWFQNCLG-------AL
        GL+++  + ++E VAI L I A +D +  +A R F  + ET+ R  + VL A+ RL  E +  +      + S+        W +  + LG       A+
Subjt:  GLEATQYVDVEEMVAILLHIVA-HDVKNKVARRYFARSDETVSRHLNVVLNAVLRLH-EILLKQPDPVTHSCSH------EKWRWFQNCLG-------AL

Query:  DGTHIKVNYIFVMPGWEGSASDSRVLRDVVSRPTGLKV-PKGYYYLCDAGYLNAEGFFAP
            +   Y FV  G  GS  D+RVL   +S      V P   YYL D+GY N  G+ AP
Subjt:  DGTHIKVNYIFVMPGWEGSASDSRVLRDVVSRPTGLKV-PKGYYYLCDAGYLNAEGFFAP

AT5G28950.1 unknown protein3.3e-0531.65Show/hide
Query:  WFQNCLGALDGTHI-----------------------------KVNYIFVMPGWEGSASDSRVLRDVVSRPTG-LKVPK
        +F++C+GA+D THI                              V +++V+ GWEGSA DS+VL D ++R +  L VP+
Subjt:  WFQNCLGALDGTHI-----------------------------KVNYIFVMPGWEGSASDSRVLRDVVSRPTG-LKVPK

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)2.0e-0543.14Show/hide
Query:  YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
        +I+V+ GWEGSA DSRVL D + +          +YL D G+ N   F AP
Subjt:  YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)5.1e-2229.49Show/hide
Query:  KVTVNNNNSNLFIETNG----------MSITKFFLNLNKWLTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLH
        K+++++ N  ++   NG          M    F+   +   TRG L  T  + +E  +AI L I+ H+++ +  +  F  S ET+SRH N VLNAV+ + 
Subjt:  KVTVNNNNSNLFIETNG----------MSITKFFLNLNKWLTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLH

Query:  EILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKV-----------------------------NYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGY
        +    QP+  + +  ++   +F++C+G +D  HI V                              + +V+ GWEGSASD +VL   ++R   L+VP+G 
Subjt:  EILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKV-----------------------------NYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGY

Query:  YYLCDAGYLNAEGFFAP
        YY+ D  Y N  GF AP
Subjt:  YYLCDAGYLNAEGFFAP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGTTACATGTTTTTTTATAAACAAAAAAGTCACTGTAAATAACAATAATTCTAATTTGTTTATAGAAACAAATGGGATGAGTATTACTAAATTTTTTCTTAACCT
AAACAAATGGTTAACAAGAGGGGGATTGGAAGCCACTCAATATGTGGATGTTGAAGAGATGGTTGCGATTCTTTTGCATATTGTAGCACACGATGTTAAGAATAAGGTAG
CTCGACGATATTTTGCAAGGTCTGATGAAACAGTGTCAAGACACCTCAATGTTGTTCTTAACGCAGTTCTTAGACTCCATGAAATCCTTCTTAAGCAACCTGATCCAGTG
ACCCATTCATGTTCACACGAGAAGTGGCGATGGTTTCAGAATTGTCTAGGTGCATTAGATGGTACACACATCAAAGTGAATTACATATTTGTCATGCCTGGATGGGAAGG
GTCTGCATCAGATTCGAGAGTACTTAGAGATGTAGTGTCACGACCTACTGGTCTAAAAGTCCCAAAGGGTTACTACTACTTGTGTGATGCTGGTTATCTAAATGCTGAAG
GATTCTTCGCTCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGTTACATGTTTTTTTATAAACAAAAAAGTCACTGTAAATAACAATAATTCTAATTTGTTTATAGAAACAAATGGGATGAGTATTACTAAATTTTTTCTTAACCT
AAACAAATGGTTAACAAGAGGGGGATTGGAAGCCACTCAATATGTGGATGTTGAAGAGATGGTTGCGATTCTTTTGCATATTGTAGCACACGATGTTAAGAATAAGGTAG
CTCGACGATATTTTGCAAGGTCTGATGAAACAGTGTCAAGACACCTCAATGTTGTTCTTAACGCAGTTCTTAGACTCCATGAAATCCTTCTTAAGCAACCTGATCCAGTG
ACCCATTCATGTTCACACGAGAAGTGGCGATGGTTTCAGAATTGTCTAGGTGCATTAGATGGTACACACATCAAAGTGAATTACATATTTGTCATGCCTGGATGGGAAGG
GTCTGCATCAGATTCGAGAGTACTTAGAGATGTAGTGTCACGACCTACTGGTCTAAAAGTCCCAAAGGGTTACTACTACTTGTGTGATGCTGGTTATCTAAATGCTGAAG
GATTCTTCGCTCCATAA
Protein sequenceShow/hide protein sequence
MRVTCFFINKKVTVNNNNSNLFIETNGMSITKFFLNLNKWLTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPV
THSCSHEKWRWFQNCLGALDGTHIKVNYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP