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Pay0016353 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0016353
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGag-pol polyprotein
Genome locationchr08:15652189..15652675
RNA-Seq ExpressionPay0016353
SyntenyPay0016353
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032212.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]1.1e-5074.21Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICA
        MKS+FEMSMV ELSCFL LQIKQRS  IFISQEKY KN+VKKFGLDQCQHKRT  ATHVKVTKD+NGTVVDHKLYRS+VGSLLYL AS+LDIAYAVGICA
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICA

Query:  RFQSDPLT------------------LEFCIHLTRLLPWLDIVMLIGLVLQMIGKALLE
        RFQS P +                     CI LT+ LPWLDIVMLI LVLQMIGKALLE
Subjt:  RFQSDPLT------------------LEFCIHLTRLLPWLDIVMLIGLVLQMIGKALLE

KAA0035790.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]7.1e-5099.06Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICARF
        MKSEFEMSMVGELSCFLGLQIKQRSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICARF
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICARF

Query:  QSDPLT
        QSDP T
Subjt:  QSDPLT

TYK22184.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]4.0e-5376.25Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICA
        MKS+FEMSMVGELSCFL LQIKQRS  IFISQEKY KN+VKKFGLDQCQHKRT  ATHVKVTKD+NGTVVDHKLYRS+VGSLLYL  S+LDIAYAVGICA
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICA

Query:  RFQSDPL----------------TLEF--CIHLTRLLPWLDIVMLIGLVLQMIGKALLEV
        RFQSDP                 T +F  CI LT+ LPWLDIVMLIGLVLQMIGKALLE+
Subjt:  RFQSDPL----------------TLEF--CIHLTRLLPWLDIVMLIGLVLQMIGKALLEV

TYK29824.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]2.1e-4989.17Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICARF
        MKSEFEMSMVGELSCFLGLQIKQRSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICARF
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICARF

Query:  QSDPLTLEFCIHLTRLLPWL
        QSDP T    + + R+L ++
Subjt:  QSDPLTLEFCIHLTRLLPWL

XP_016899484.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]1.2e-5477.3Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICA
        MKS+FEMSMVGELSCFL LQIKQRS  IFISQEKY KN+VKKFGLDQCQHKRT  ATHVKVTKD+NGTVVDHKLYRS+VGSLLYL  S+LDIAYAVGICA
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICA

Query:  RFQSDPL----------------TLEF--CIHLTRLLPWLDIVMLIGLVLQMIGKALLEVVSL
        RFQSDP                 T +F  CI LT+ LPWLDIVMLIGLVLQMIGKALLEVVSL
Subjt:  RFQSDPL----------------TLEF--CIHLTRLLPWLDIVMLIGLVLQMIGKALLEVVSL

TrEMBL top hitse value%identityAlignment
A0A1S4DU18 uncharacterized mitochondrial protein AtMg00810-like6.0e-5577.3Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICA
        MKS+FEMSMVGELSCFL LQIKQRS  IFISQEKY KN+VKKFGLDQCQHKRT  ATHVKVTKD+NGTVVDHKLYRS+VGSLLYL  S+LDIAYAVGICA
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICA

Query:  RFQSDPL----------------TLEF--CIHLTRLLPWLDIVMLIGLVLQMIGKALLEVVSL
        RFQSDP                 T +F  CI LT+ LPWLDIVMLIGLVLQMIGKALLEVVSL
Subjt:  RFQSDPL----------------TLEF--CIHLTRLLPWLDIVMLIGLVLQMIGKALLEVVSL

A0A5A7SMF2 Putative gag-pol polyprotein5.3e-5174.21Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICA
        MKS+FEMSMV ELSCFL LQIKQRS  IFISQEKY KN+VKKFGLDQCQHKRT  ATHVKVTKD+NGTVVDHKLYRS+VGSLLYL AS+LDIAYAVGICA
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICA

Query:  RFQSDPLT------------------LEFCIHLTRLLPWLDIVMLIGLVLQMIGKALLE
        RFQS P +                     CI LT+ LPWLDIVMLI LVLQMIGKALLE
Subjt:  RFQSDPLT------------------LEFCIHLTRLLPWLDIVMLIGLVLQMIGKALLE

A0A5A7SXM5 Putative gag-pol polyprotein3.4e-5099.06Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICARF
        MKSEFEMSMVGELSCFLGLQIKQRSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICARF
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICARF

Query:  QSDPLT
        QSDP T
Subjt:  QSDPLT

A0A5D3DF22 Putative gag-pol polyprotein1.9e-5376.25Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICA
        MKS+FEMSMVGELSCFL LQIKQRS  IFISQEKY KN+VKKFGLDQCQHKRT  ATHVKVTKD+NGTVVDHKLYRS+VGSLLYL  S+LDIAYAVGICA
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICA

Query:  RFQSDPL----------------TLEF--CIHLTRLLPWLDIVMLIGLVLQMIGKALLEV
        RFQSDP                 T +F  CI LT+ LPWLDIVMLIGLVLQMIGKALLE+
Subjt:  RFQSDPL----------------TLEF--CIHLTRLLPWLDIVMLIGLVLQMIGKALLEV

A0A5D3E1T0 Putative gag-pol polyprotein1.0e-4989.17Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICARF
        MKSEFEMSMVGELSCFLGLQIKQRSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICARF
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICARF

Query:  QSDPLTLEFCIHLTRLLPWL
        QSDP T    + + R+L ++
Subjt:  QSDPLTLEFCIHLTRLLPWL

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.5e-1033.04Show/hide
Query:  MKSEFEMSMVGELSCFLGLQI----KQRSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHK------LYRSLVGSLLYLM-ASKLD
        +   F+M  +G     LG++I      R +++SQEKY++ ++++F +   +   T +A H+K++K +  T V+ K       Y S VGSL+Y M  ++ D
Subjt:  MKSEFEMSMVGELSCFLGLQI----KQRSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHK------LYRSLVGSLLYLM-ASKLD

Query:  IAYAVGICARFQSDP
        IA+AVG+ +RF  +P
Subjt:  IAYAVGICARFQSDP

P92519 Uncharacterized mitochondrial protein AtMg008107.7e-0730.43Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQR--SIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDIN-GTVVDHKLYRSLVGSLLYLMASKLDIAYAVGIC
        + S F M  +G +  FLG+QIK     +F+SQ KY + ++   G+  C  K  S    +K+   ++     D   +RS+VG+L YL  ++ DI+YAV I 
Subjt:  MKSEFEMSMVGELSCFLGLQIKQR--SIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDIN-GTVVDHKLYRSLVGSLLYLMASKLDIAYAVGIC

Query:  ARFQSDPLTLEFCIHLTRLLPWLDIVMLIGLVLQMIGK
         +   +P   +F + L R+L ++   +  GL +    K
Subjt:  ARFQSDPLTLEFCIHLTRLLPWLDIVMLIGLVLQMIGK

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE19.4e-0529.51Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQ--RSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICA
        +   F +    EL  FLG++ K+    + +SQ +Y+ +L+ +  +   +   T +A   K++      + D   YR +VGSL YL  ++ DI+YAV   +
Subjt:  MKSEFEMSMVGELSCFLGLQIKQ--RSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICA

Query:  RFQSDPLTLEFCIHLTRLLPWL
        +F   P T E    L R+L +L
Subjt:  RFQSDPLTLEFCIHLTRLLPWL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.6e-0427.36Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQ--RSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICA
        +   F +    +L  FLG++ K+  + + +SQ +Y  +L+ +  +   +   T +AT  K+T      + D   YR +VGSL YL  ++ D++YAV   +
Subjt:  MKSEFEMSMVGELSCFLGLQIKQ--RSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICA

Query:  RFQSDP
        ++   P
Subjt:  RFQSDP

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 82.0e-1035.85Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICA
        +KS F++  +G L  FLGL+I + +  I I Q KY  +L+ + GL  C+     +   V  +    G  VD K YR L+G L+YL  ++LDI++AV   +
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICA

Query:  RFQSDP
        +F   P
Subjt:  RFQSDP

ATMG00810.1 DNA/RNA polymerases superfamily protein5.5e-0830.43Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQR--SIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDIN-GTVVDHKLYRSLVGSLLYLMASKLDIAYAVGIC
        + S F M  +G +  FLG+QIK     +F+SQ KY + ++   G+  C  K  S    +K+   ++     D   +RS+VG+L YL  ++ DI+YAV I 
Subjt:  MKSEFEMSMVGELSCFLGLQIKQR--SIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDIN-GTVVDHKLYRSLVGSLLYLMASKLDIAYAVGIC

Query:  ARFQSDPLTLEFCIHLTRLLPWLDIVMLIGLVLQMIGK
         +   +P   +F + L R+L ++   +  GL +    K
Subjt:  ARFQSDPLTLEFCIHLTRLLPWLDIVMLIGLVLQMIGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCAGAATTTGAAATGAGCATGGTAGGAGAACTTTCTTGTTTTCTAGGTCTACAGATCAAACAAAGAAGTATATTTATATCTCAAGAGAAGTATGTCAAGAACTT
AGTCAAAAAATTTGGTCTGGATCAGTGTCAACATAAAAGGACTTCAGTGGCGACACATGTTAAAGTTACTAAAGACATTAATGGTACAGTAGTAGATCACAAACTGTATA
GAAGCTTGGTTGGGAGTCTTCTATATTTAATGGCAAGCAAACTTGACATTGCCTATGCTGTTGGAATATGTGCTCGATTTCAGTCAGATCCTCTGACTTTGGAATTTTGT
ATTCATTTGACACGACTTCTACCTTGGTTGGATATTGTGATGCTGATTGGGCTGGTTCTCCAGATGATAGGAAAAGCACTTCTGGAGGTTGTTTCTTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAATCAGAATTTGAAATGAGCATGGTAGGAGAACTTTCTTGTTTTCTAGGTCTACAGATCAAACAAAGAAGTATATTTATATCTCAAGAGAAGTATGTCAAGAACTT
AGTCAAAAAATTTGGTCTGGATCAGTGTCAACATAAAAGGACTTCAGTGGCGACACATGTTAAAGTTACTAAAGACATTAATGGTACAGTAGTAGATCACAAACTGTATA
GAAGCTTGGTTGGGAGTCTTCTATATTTAATGGCAAGCAAACTTGACATTGCCTATGCTGTTGGAATATGTGCTCGATTTCAGTCAGATCCTCTGACTTTGGAATTTTGT
ATTCATTTGACACGACTTCTACCTTGGTTGGATATTGTGATGCTGATTGGGCTGGTTCTCCAGATGATAGGAAAAGCACTTCTGGAGGTTGTTTCTTTGTAG
Protein sequenceShow/hide protein sequence
MKSEFEMSMVGELSCFLGLQIKQRSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICARFQSDPLTLEFC
IHLTRLLPWLDIVMLIGLVLQMIGKALLEVVSL