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Pay0016604 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0016604
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGag-pol polyprotein
Genome locationchr12:16931994..16934110
RNA-Seq ExpressionPay0016604
SyntenyPay0016604
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033068.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.1e-6372.4Show/hide
Query:  IFLNGLLTEFGMAKAQILFDSKILLLDDAFTRVLYIESSPSGVSIPQSST-----------PRAMDGNVQRKSYDHRKPDSTEIVCNYCRKPGYIKRDCR
        IFLNGLL EFGM KAQIL DSKI  LDDAFTRVL IESSP+GVSIPQSS+           PRAMDGNVQRKSYDHRKP ST+IVCNYC KPG+IKRDCR
Subjt:  IFLNGLLTEFGMAKAQILFDSKILLLDDAFTRVLYIESSPSGVSIPQSST-----------PRAMDGNVQRKSYDHRKPDSTEIVCNYCRKPGYIKRDCR

Query:  KLLYKNSQQSQHAQIASTY------------EYAKFQSYQDSLQATCSSAPVASTVALGNTMCLLTSSTKWVIDSGVTAYMIGNYRIFSRPI
        KLLYKNSQQSQHAQIAST             EY KFQ+YQD LQA+ SS P+ASTVA GNT CLLTSSTKWVIDS  T +M GN R+FSRP+
Subjt:  KLLYKNSQQSQHAQIASTY------------EYAKFQSYQDSLQATCSSAPVASTVALGNTMCLLTSSTKWVIDSGVTAYMIGNYRIFSRPI

KAA0035572.1 putative mitochondrial protein [Cucumis melo var. makuwa]3.7e-5672.68Show/hide
Query:  MIFLNGLLTEFGMAKAQILFDSKILLLDDAFTRVLYIESSPSGVSIPQSST-----------PRAMDGNVQRKSYDHRKPDSTEIVCNYCRKPGYIKRDC
        MIFLNGLL EFGMAK QIL DSKI  LDDAFTRVL IESS +GVSIPQSS+           PRAMDGNVQRKSYDHRKPDSTEIVCN   K G+IKRDC
Subjt:  MIFLNGLLTEFGMAKAQILFDSKILLLDDAFTRVLYIESSPSGVSIPQSST-----------PRAMDGNVQRKSYDHRKPDSTEIVCNYCRKPGYIKRDC

Query:  RKLLYKNSQQSQHAQIASTY------------EYAKFQSYQDSLQATCSSAPVASTVALGNTMCLLTSSTKWVIDSGVTAYMI
        RKLLYKNSQQSQHAQIAST             EYAKFQ+YQDSLQA  SS PVASTVA G T CLLTSSTKWVI SG   +MI
Subjt:  RKLLYKNSQQSQHAQIASTY------------EYAKFQSYQDSLQATCSSAPVASTVALGNTMCLLTSSTKWVIDSGVTAYMI

TYK30615.1 Copia protein [Cucumis melo var. makuwa]5.4e-4768.24Show/hide
Query:  KAQILFDSKILLLDDAFTRVLYIESSPSGVSIPQSST-----------PRAMDGNVQRKSYDHRKPDSTEIVCNYCRKPGYIKRDCRKLLYKNSQQSQHA
        KAQIL DSKI  LD+AFTRVL  ESSP+GVSIPQSST           PRAMDGNV  KSYDHRKPDSTEIVCNYCRKP + KRDCRKLLYKNSQQSQHA
Subjt:  KAQILFDSKILLLDDAFTRVLYIESSPSGVSIPQSST-----------PRAMDGNVQRKSYDHRKPDSTEIVCNYCRKPGYIKRDCRKLLYKNSQQSQHA

Query:  QIAST------------YEYAKFQSYQDSLQATCSSAPVASTVALGNTMCLLTSSTKWVIDSGVTAYMIG
        QIAST             E AK Q+YQDSLQA+ SS P+ASTV  GNT CLLTSSTKW     VT  +IG
Subjt:  QIAST------------YEYAKFQSYQDSLQATCSSAPVASTVALGNTMCLLTSSTKWVIDSGVTAYMIG

XP_031738594.1 uncharacterized protein LOC116402733 isoform X1 [Cucumis sativus]4.1e-5565.64Show/hide
Query:  MIFLNGLLTEFGMAKAQILFDSKILLLDDAFTRVLYIESSPSGVSIPQSSTPRAMDGN----VQRKSYDHRKPDSTEIVCNYCRKPGYIKRDCRKLLYKN
        MIFLNGLL EFGMAK QIL DSKI  LDDAFTRVL IESSP+ VSIPQ S+      N     QR S DHRKP+S EIVCNYCRKPG++KRDCRKLLYKN
Subjt:  MIFLNGLLTEFGMAKAQILFDSKILLLDDAFTRVLYIESSPSGVSIPQSSTPRAMDGN----VQRKSYDHRKPDSTEIVCNYCRKPGYIKRDCRKLLYKN

Query:  SQQSQHAQIASTY------------EYAKFQSYQDSLQATCSSAPVASTVALGNTMCLLTSSTKWVIDSGVTAYMIGNYRIFSRPILSCRKEGYW
        SQ+SQHAQIAST             E+AKFQ+YQ+SLQA+ SS P+ASTVA GN  CLLTSSTKWVIDSG TA+M G          SC +E YW
Subjt:  SQQSQHAQIASTY------------EYAKFQSYQDSLQATCSSAPVASTVALGNTMCLLTSSTKWVIDSGVTAYMIGNYRIFSRPILSCRKEGYW

XP_031744753.1 uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus]4.4e-5768.82Show/hide
Query:  MIFLNGLLTEFGMAKAQILFDSKILLLDDAFTRVLYIESSPSGVSIPQSSTPRAMDGN----VQRKSYDHRKPDSTEIVCNYCRKPGYIKRDCRKLLYKN
        MIFLNGLL EFGMAK QIL DSKI  LDDAFTRVL IESSP+ VSIPQ S+      N     QR S DHRKP+S EIVCNYCRKPG++KRDCRKLLYKN
Subjt:  MIFLNGLLTEFGMAKAQILFDSKILLLDDAFTRVLYIESSPSGVSIPQSSTPRAMDGN----VQRKSYDHRKPDSTEIVCNYCRKPGYIKRDCRKLLYKN

Query:  SQQSQHAQIASTY------------EYAKFQSYQDSLQATCSSAPVASTVALGNTMCLLTSSTKWVIDSGVTAYMIGNYRIFSRPI
        SQ+SQHAQIAST             E+AKFQ+YQ+SLQA+ SS P+ASTVA GN  CLLTSSTKWVIDSG TA+M GN  +FSRP+
Subjt:  SQQSQHAQIASTY------------EYAKFQSYQDSLQATCSSAPVASTVALGNTMCLLTSSTKWVIDSGVTAYMIGNYRIFSRPI

TrEMBL top hitse value%identityAlignment
A0A1S4DUD2 uncharacterized protein LOC1079904645.3e-4071.88Show/hide
Query:  MDGNVQRKSYDHRKPDSTEIVCNYCRKPGYIKRDCRKLLYKNSQQSQHAQIASTY------------EYAKFQSYQDSLQATCSSAPVASTVALGNTMCL
        MDGNVQRKSYDHR PDSTEIVCNYCRK G+IK DC KLLYKNSQQSQHAQIAST             EYAKF++YQDSLQA+ SS PV S VA  NT CL
Subjt:  MDGNVQRKSYDHRKPDSTEIVCNYCRKPGYIKRDCRKLLYKNSQQSQHAQIASTY------------EYAKFQSYQDSLQATCSSAPVASTVALGNTMCL

Query:  LTSSTKWVIDSGVTAYMIGNYRIFSRPI
        LTSST+WVIDSG  A+M GN R+FSRP+
Subjt:  LTSSTKWVIDSGVTAYMIGNYRIFSRPI

A0A5A7SR90 Gag-pol polyprotein5.3e-6472.4Show/hide
Query:  IFLNGLLTEFGMAKAQILFDSKILLLDDAFTRVLYIESSPSGVSIPQSST-----------PRAMDGNVQRKSYDHRKPDSTEIVCNYCRKPGYIKRDCR
        IFLNGLL EFGM KAQIL DSKI  LDDAFTRVL IESSP+GVSIPQSS+           PRAMDGNVQRKSYDHRKP ST+IVCNYC KPG+IKRDCR
Subjt:  IFLNGLLTEFGMAKAQILFDSKILLLDDAFTRVLYIESSPSGVSIPQSST-----------PRAMDGNVQRKSYDHRKPDSTEIVCNYCRKPGYIKRDCR

Query:  KLLYKNSQQSQHAQIASTY------------EYAKFQSYQDSLQATCSSAPVASTVALGNTMCLLTSSTKWVIDSGVTAYMIGNYRIFSRPI
        KLLYKNSQQSQHAQIAST             EY KFQ+YQD LQA+ SS P+ASTVA GNT CLLTSSTKWVIDS  T +M GN R+FSRP+
Subjt:  KLLYKNSQQSQHAQIASTY------------EYAKFQSYQDSLQATCSSAPVASTVALGNTMCLLTSSTKWVIDSGVTAYMIGNYRIFSRPI

A0A5A7T406 Copia protein2.6e-4768.24Show/hide
Query:  KAQILFDSKILLLDDAFTRVLYIESSPSGVSIPQSST-----------PRAMDGNVQRKSYDHRKPDSTEIVCNYCRKPGYIKRDCRKLLYKNSQQSQHA
        KAQIL DSKI  LD+AFTRVL  ESSP+GVSIPQSST           PRAMDGNV  KSYDHRKPDSTEIVCNYCRKP + KRDCRKLLYKNSQQSQHA
Subjt:  KAQILFDSKILLLDDAFTRVLYIESSPSGVSIPQSST-----------PRAMDGNVQRKSYDHRKPDSTEIVCNYCRKPGYIKRDCRKLLYKNSQQSQHA

Query:  QIAST------------YEYAKFQSYQDSLQATCSSAPVASTVALGNTMCLLTSSTKWVIDSGVTAYMIG
        QIAST             E AK Q+YQDSLQA+ SS P+ASTV  GNT CLLTSSTKW     VT  +IG
Subjt:  QIAST------------YEYAKFQSYQDSLQATCSSAPVASTVALGNTMCLLTSSTKWVIDSGVTAYMIG

A0A5D3E4V8 Putative mitochondrial protein1.8e-5672.68Show/hide
Query:  MIFLNGLLTEFGMAKAQILFDSKILLLDDAFTRVLYIESSPSGVSIPQSST-----------PRAMDGNVQRKSYDHRKPDSTEIVCNYCRKPGYIKRDC
        MIFLNGLL EFGMAK QIL DSKI  LDDAFTRVL IESS +GVSIPQSS+           PRAMDGNVQRKSYDHRKPDSTEIVCN   K G+IKRDC
Subjt:  MIFLNGLLTEFGMAKAQILFDSKILLLDDAFTRVLYIESSPSGVSIPQSST-----------PRAMDGNVQRKSYDHRKPDSTEIVCNYCRKPGYIKRDC

Query:  RKLLYKNSQQSQHAQIASTY------------EYAKFQSYQDSLQATCSSAPVASTVALGNTMCLLTSSTKWVIDSGVTAYMI
        RKLLYKNSQQSQHAQIAST             EYAKFQ+YQDSLQA  SS PVASTVA G T CLLTSSTKWVI SG   +MI
Subjt:  RKLLYKNSQQSQHAQIASTY------------EYAKFQSYQDSLQATCSSAPVASTVALGNTMCLLTSSTKWVIDSGVTAYMI

A0A5D3E5M8 Copia protein2.6e-4768.24Show/hide
Query:  KAQILFDSKILLLDDAFTRVLYIESSPSGVSIPQSST-----------PRAMDGNVQRKSYDHRKPDSTEIVCNYCRKPGYIKRDCRKLLYKNSQQSQHA
        KAQIL DSKI  LD+AFTRVL  ESSP+GVSIPQSST           PRAMDGNV  KSYDHRKPDSTEIVCNYCRKP + KRDCRKLLYKNSQQSQHA
Subjt:  KAQILFDSKILLLDDAFTRVLYIESSPSGVSIPQSST-----------PRAMDGNVQRKSYDHRKPDSTEIVCNYCRKPGYIKRDCRKLLYKNSQQSQHA

Query:  QIAST------------YEYAKFQSYQDSLQATCSSAPVASTVALGNTMCLLTSSTKWVIDSGVTAYMIG
        QIAST             E AK Q+YQDSLQA+ SS P+ASTV  GNT CLLTSSTKW     VT  +IG
Subjt:  QIAST------------YEYAKFQSYQDSLQATCSSAPVASTVALGNTMCLLTSSTKWVIDSGVTAYMIG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATTTTTAAATGGACTTTTAACTGAATTTGGAATGGCAAAGGCACAGATTCTCTTTGACTCTAAGATCCTGTTATTAGACGATGCTTTCACTCGTGTCCTTTACAT
TGAAAGTTCTCCATCTGGTGTGTCTATTCCTCAATCCAGTACACCTCGAGCGATGGATGGCAATGTTCAGAGGAAGAGTTATGATCATCGAAAGCCAGATTCTACAGAGA
TTGTTTGTAACTATTGTCGTAAACCAGGCTATATAAAACGTGATTGTCGAAAATTGTTATATAAGAATAGTCAACAATCTCAACATGCTCAGATAGCTTCCACATATGAG
TACGCTAAGTTTCAGAGCTACCAAGATTCATTACAAGCGACATGTTCCTCTGCTCCTGTTGCATCAACTGTTGCCCTAGGTAATACCATGTGTCTTCTTACATCATCTAC
AAAATGGGTCATAGACTCTGGTGTCACAGCCTATATGATAGGTAATTATCGCATATTTTCTAGACCTATCTTGTCCTGCAGGAAAGAAGGCTATTGGTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATATTTTTAAATGGACTTTTAACTGAATTTGGAATGGCAAAGGCACAGATTCTCTTTGACTCTAAGATCCTGTTATTAGACGATGCTTTCACTCGTGTCCTTTACAT
TGAAAGTTCTCCATCTGGTGTGTCTATTCCTCAATCCAGTACACCTCGAGCGATGGATGGCAATGTTCAGAGGAAGAGTTATGATCATCGAAAGCCAGATTCTACAGAGA
TTGTTTGTAACTATTGTCGTAAACCAGGCTATATAAAACGTGATTGTCGAAAATTGTTATATAAGAATAGTCAACAATCTCAACATGCTCAGATAGCTTCCACATATGAG
TACGCTAAGTTTCAGAGCTACCAAGATTCATTACAAGCGACATGTTCCTCTGCTCCTGTTGCATCAACTGTTGCCCTAGGTAATACCATGTGTCTTCTTACATCATCTAC
AAAATGGGTCATAGACTCTGGTGTCACAGCCTATATGATAGGTAATTATCGCATATTTTCTAGACCTATCTTGTCCTGCAGGAAAGAAGGCTATTGGTTGTAA
Protein sequenceShow/hide protein sequence
MIFLNGLLTEFGMAKAQILFDSKILLLDDAFTRVLYIESSPSGVSIPQSSTPRAMDGNVQRKSYDHRKPDSTEIVCNYCRKPGYIKRDCRKLLYKNSQQSQHAQIASTYE
YAKFQSYQDSLQATCSSAPVASTVALGNTMCLLTSSTKWVIDSGVTAYMIGNYRIFSRPILSCRKEGYWL