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Pay0016659 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0016659
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr11:28872259..28872594
RNA-Seq ExpressionPay0016659
SyntenyPay0016659
Gene Ontology termsGO:0007034 - vacuolar transport (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005768 - endosome (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025132.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.7e-4893.94Show/hide
Query:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST
        MTAI+NKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML+SGIIRPSTSPYSSPVLLVRK+DGSWRFCVDYRALNN T
Subjt:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST

KAA0038243.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.1e-4996.97Show/hide
Query:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST
        MTAIINKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNN T
Subjt:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST

KAA0049776.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.0e-4894.95Show/hide
Query:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST
        MTAI+NKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNN T
Subjt:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST

TYK15990.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.0e-4894.95Show/hide
Query:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST
        MTAI+NKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNN T
Subjt:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST

TYK23090.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.0e-4894.95Show/hide
Query:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST
        MTAI+NKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNN T
Subjt:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST

TrEMBL top hitse value%identityAlignment
A0A5A7SIV7 Ty3/gypsy retrotransposon protein3.3e-4893.94Show/hide
Query:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST
        MTAI+NKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML+SGIIRPSTSPYSSPVLLVRK+DGSWRFCVDYRALNN T
Subjt:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST

A0A5A7T5N7 Ty3/gypsy retrotransposon protein2.9e-4996.97Show/hide
Query:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST
        MTAIINKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNN T
Subjt:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST

A0A5A7U6J3 Ty3/gypsy retrotransposon protein1.5e-4894.95Show/hide
Query:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST
        MTAI+NKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNN T
Subjt:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST

A0A5D3CXB1 Ty3/gypsy retrotransposon protein1.5e-4894.95Show/hide
Query:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST
        MTAI+NKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNN T
Subjt:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST

A0A5D3DI73 Ty3/gypsy retrotransposon protein1.5e-4894.95Show/hide
Query:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST
        MTAI+NKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNN T
Subjt:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST

SwissProt top hitse value%identityAlignment
P10394 Retrovirus-related Pol polyprotein from transposon 4121.2e-0739.71Show/hide
Query:  DPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDG------SWRFCVDYRALN
        +PV  + YR  H Q EE++  V +++   I+ PS S Y+SP+LLV KK         WR  +DYR +N
Subjt:  DPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDG------SWRFCVDYRALN

P20825 Retrovirus-related Pol polyprotein from transposon 2974.1e-0833.33Show/hide
Query:  MTAIINKFREV-FEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKD-----GSWRFCVDYRA
        +  ++NKFR + +++  +L     I+H +     + P+  + Y  A   + E+E  V EML  G+IR S SPY+SP  +V KK        +R  +DYR 
Subjt:  MTAIINKFREV-FEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKD-----GSWRFCVDYRA

Query:  LNNST
        LN  T
Subjt:  LNNST

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.0e-1441.41Show/hide
Query:  KFREVFEQPNRLPPQRG------IEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST
        K+RE+    N LPP+        ++H I +K GA    ++PY    + ++E+ ++V ++L +  I PS SP SSPV+LV KKDG++R CVDYR LN +T
Subjt:  KFREVFEQPNRLPPQRG------IEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.5e-1033.94Show/hide
Query:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLK-----QGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKK-----DGSWRFCV
        + +++ +F  +FE     PP  G+     +K        DP+  + Y Y    + E+ER +DE+L  GIIRPS SPY+SP+ +V KK     +  +R  V
Subjt:  MTAIINKFREVFEQPNRLPPQRGIEHHIYLK-----QGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKK-----DGSWRFCV

Query:  DYRALNNST
        D++ LN  T
Subjt:  DYRALNNST

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.0e-1441.41Show/hide
Query:  KFREVFEQPNRLPPQRG------IEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST
        K+RE+    N LPP+        ++H I +K GA    ++PY    + ++E+ ++V ++L +  I PS SP SSPV+LV KKDG++R CVDYR LN +T
Subjt:  KFREVFEQPNRLPPQRG------IEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST

Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein4.3e-0843.94Show/hide
Query:  QKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRAL--NNSTGQIPNSSRGGAL
        ++  ++  + EML + II+PS SPYSSPVLLV+KKDG W       +L   + T Q+PNS   G +
Subjt:  QKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRAL--NNSTGQIPNSSRGGAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGCAATTATCAATAAGTTCAGAGAGGTGTTCGAACAACCAAACAGACTCCCACCCCAACGAGGAATAGAACATCATATATACCTAAAACAAGGAGCCGATCCAGT
CAATGTTAGACCGTACCGGTACGCACACCAACAGAAAGAGGAGATGGAGAGATTGGTGGACGAGATGCTCACTTCGGGAATTATCAGGCCAAGCACCAGCCCATACTCCA
GCCCAGTGTTGTTAGTAAGAAAGAAGGATGGAAGTTGGAGATTCTGTGTGGACTACCGGGCATTGAATAACAGTACCGGACAAATTCCCAATTCCAGTCGTGGAGGAGCT
CTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGGCAATTATCAATAAGTTCAGAGAGGTGTTCGAACAACCAAACAGACTCCCACCCCAACGAGGAATAGAACATCATATATACCTAAAACAAGGAGCCGATCCAGT
CAATGTTAGACCGTACCGGTACGCACACCAACAGAAAGAGGAGATGGAGAGATTGGTGGACGAGATGCTCACTTCGGGAATTATCAGGCCAAGCACCAGCCCATACTCCA
GCCCAGTGTTGTTAGTAAGAAAGAAGGATGGAAGTTGGAGATTCTGTGTGGACTACCGGGCATTGAATAACAGTACCGGACAAATTCCCAATTCCAGTCGTGGAGGAGCT
CTTTGA
Protein sequenceShow/hide protein sequence
MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNSTGQIPNSSRGGA
L