CuGenDBv2

Gene ID	Pay0016718
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Integrase catalytic domain-containing protein
Genome location	chr02:5332505..5332957
RNA-Seq Expression	Pay0016718
Synteny	Pay0016718
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039305.1 uncharacterized protein E6C27_scaffold64G001000 [Cucumis melo var. makuwa]

2.2e-49

86.07

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Query:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD
        MYN  ANGLVE FNKTL+NL+KKI+SKSKRDWQERIGEALWAYRTTHRTP+GVTPYSLVY VE VLPLEREIPSLRM VQE LT EDNVKL LQ L+ALD
Subjt:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD

Query:  EKRLEAQQALERYQARMSKAFD
        EKRLEAQQALE YQ RMSKAFD
Subjt:  EKRLEAQQALERYQARMSKAFD

KAA0052829.1 uncharacterized protein E6C27_scaffold773G00250 [Cucumis melo var. makuwa]

3.0e-75

97.33

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Query:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD
        MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTP GV PYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD
Subjt:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD

Query:  EKRLEAQQALERYQARMSKAFDMPLNSLLLDWGSSACCKKTDHHNKAYRK
        EKRLEAQQALERYQARMSKAFDM LNSLLLDWGSSACCKKTDH+NKAYRK
Subjt:  EKRLEAQQALERYQARMSKAFDMPLNSLLLDWGSSACCKKTDHHNKAYRK

TYK00489.1 uncharacterized protein E5676_scaffold169G00980 [Cucumis melo var. makuwa]

2.2e-49

86.07

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Query:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD
        MYN  ANGLVE FNKTL+NL+KKI+SKSKRDWQERIGEALWAYRTTHRTP+GVTPYSLVY VE VLPLEREIPSLRM VQE LT EDNVKL LQ L+ALD
Subjt:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD

Query:  EKRLEAQQALERYQARMSKAFD
        EKRLEAQQALE YQ RMSKAFD
Subjt:  EKRLEAQQALERYQARMSKAFD

TYK18825.1 uncharacterized protein E5676_scaffold204G00150 [Cucumis melo var. makuwa]

7.1e-77

98.67

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Query:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD
        MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPY LVYDVEDVLPLEREIPSLRMEVQEEL IEDNVKLHLQGLKALD
Subjt:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD

Query:  EKRLEAQQALERYQARMSKAFDMPLNSLLLDWGSSACCKKTDHHNKAYRK
        EKRLEAQQALERYQARMSKAFDMPLNSLLLDWGSSACCKKTDHHNKAYRK
Subjt:  EKRLEAQQALERYQARMSKAFDMPLNSLLLDWGSSACCKKTDHHNKAYRK

XP_008450485.1 PREDICTED: uncharacterized protein LOC103492076 [Cucumis melo]

3.8e-78

100

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Query:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD
        MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD
Subjt:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD

Query:  EKRLEAQQALERYQARMSKAFDMPLNSLLLDWGSSACCKKTDHHNKAYRK
        EKRLEAQQALERYQARMSKAFDMPLNSLLLDWGSSACCKKTDHHNKAYRK
Subjt:  EKRLEAQQALERYQARMSKAFDMPLNSLLLDWGSSACCKKTDHHNKAYRK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BQC3 uncharacterized protein LOC103492076

1.8e-78

100

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Query:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD
        MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD
Subjt:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD

Query:  EKRLEAQQALERYQARMSKAFDMPLNSLLLDWGSSACCKKTDHHNKAYRK
        EKRLEAQQALERYQARMSKAFDMPLNSLLLDWGSSACCKKTDHHNKAYRK
Subjt:  EKRLEAQQALERYQARMSKAFDMPLNSLLLDWGSSACCKKTDHHNKAYRK

A0A5A7TD08 Integrase catalytic domain-containing protein

1.0e-49

86.07

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Query:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD
        MYN  ANGLVE FNKTL+NL+KKI+SKSKRDWQERIGEALWAYRTTHRTP+GVTPYSLVY VE VLPLEREIPSLRM VQE LT EDNVKL LQ L+ALD
Subjt:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD

Query:  EKRLEAQQALERYQARMSKAFD
        EKRLEAQQALE YQ RMSKAFD
Subjt:  EKRLEAQQALERYQARMSKAFD

A0A5A7UH20 Integrase catalytic domain-containing protein

1.5e-75

97.33

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Query:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD
        MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTP GV PYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD
Subjt:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD

Query:  EKRLEAQQALERYQARMSKAFDMPLNSLLLDWGSSACCKKTDHHNKAYRK
        EKRLEAQQALERYQARMSKAFDM LNSLLLDWGSSACCKKTDH+NKAYRK
Subjt:  EKRLEAQQALERYQARMSKAFDMPLNSLLLDWGSSACCKKTDHHNKAYRK

A0A5D3BQV3 Integrase catalytic domain-containing protein

1.0e-49

86.07

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Query:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD
        MYN  ANGLVE FNKTL+NL+KKI+SKSKRDWQERIGEALWAYRTTHRTP+GVTPYSLVY VE VLPLEREIPSLRM VQE LT EDNVKL LQ L+ALD
Subjt:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD

Query:  EKRLEAQQALERYQARMSKAFD
        EKRLEAQQALE YQ RMSKAFD
Subjt:  EKRLEAQQALERYQARMSKAFD

A0A5D3D5M8 Uncharacterized protein

3.5e-77

98.67

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Query:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD
        MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPY LVYDVEDVLPLEREIPSLRMEVQEEL IEDNVKLHLQGLKALD
Subjt:  MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALD

Query:  EKRLEAQQALERYQARMSKAFDMPLNSLLLDWGSSACCKKTDHHNKAYRK
        EKRLEAQQALERYQARMSKAFDMPLNSLLLDWGSSACCKKTDHHNKAYRK
Subjt:  EKRLEAQQALERYQARMSKAFDMPLNSLLLDWGSSACCKKTDHHNKAYRK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTACAACACAGTTGCGAATGGCCTAGTAGAAGCATTCAATAAAACGTTATTCAATCTTCTAAAGAAAATTGTCTCCAAGTCAAAGAGGGATTGGCAAGAAAGA
ATCGGTGAAGCATTATGGGCTTATCGAACCACTCATCGCACTCCTATAGGGGTTACACCATATTCGCTTGTTTACGATGTAGAGGATGTTCTTCCCCTTGAAAGA
GAAATTCCATCATTAAGAATGGAAGTGCAAGAGGAGTTGACTATTGAAGACAATGTCAAGTTACATCTTCAAGGATTAAAAGCACTTGATGAAAAGCGATTAGAA
GCTCAGCAAGCATTAGAACGTTACCAAGCGAGAATGTCTAAAGCTTTTGATATGCCGTTAAACTCGCTCCTTTTAGATTGGGGATCTAGTGCTTGCTGTAAGAAG
ACCGATCATCATAACAAGGCATACAGGAAATAA

mRNA sequence

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Protein sequence

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MYNTVANGLVEAFNKTLFNLLKKIVSKSKRDWQERIGEALWAYRTTHRTPIGVTPYSLVYDVEDVLPLEREIPSLRMEVQEELTIEDNVKLHLQGLKALDEKRLE
AQQALERYQARMSKAFDMPLNSLLLDWGSSACCKKTDHHNKAYRK

Pay0016718 (gene) of Melon (Payzawat) v1 genome