CuGenDBv2

Gene ID	Pay0016754
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	RNA-directed DNA methylation 4 isoform X1
Genome location	chr03:18177828..18190447
RNA-Seq Expression	Pay0016754
Synteny	Pay0016754
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0051104.1 RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo var. makuwa]

4.6e-36

63.33

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Query:  EELKTKKIFVQHVETLRSSDATVAIVQSFVV---------------------------STLVTCGKKTLDL--------SIWRSRKGVKDEKDDHLHDVY
        EELKTKKIFVQHVETLRSS+AT  IVQSFV                              L+   ++  +L         IWRSRKGVKDEKDD LHDVY
Subjt:  EELKTKKIFVQHVETLRSSDATVAIVQSFVV---------------------------STLVTCGKKTLDL--------SIWRSRKGVKDEKDDHLHDVY

Query:  HIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE
        HIYDI+RLDTNEISSEAP+QEQ+SLEDQSMLSSYLPLLREFIPSAAAEIE
Subjt:  HIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE

XP_004139832.1 RNA-directed DNA methylation 4 [Cucumis sativus]

3.5e-36

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Query:  EELKTKKIFVQHVETLRSSDATVAIVQSFVV---------------------------STLVTCGKKTLDLS--------IWRSRKGVKDEKDDHLHDVY
        EELKTKKIFVQHVETLRSSDATV IVQSFV                              L+   ++  +L+        IWRSRKGVKDEKDD L DVY
Subjt:  EELKTKKIFVQHVETLRSSDATVAIVQSFVV---------------------------STLVTCGKKTLDLS--------IWRSRKGVKDEKDDHLHDVY

Query:  HIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE
        HIYDI+RLDTNEISSE+PKQEQ+SLEDQSMLSSYLPLLREFIPSAAAEIE
Subjt:  HIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE

XP_008447116.1 PREDICTED: RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo]

2.3e-35

62.67

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Query:  EELKTKKIFVQHVETLRSSDATVAIVQSFVV---------------------------STLVTCGKKTLDL--------SIWRSRKGVKDEKDDHLHDVY
        EELKTKKI VQHVETLRSS+AT  IVQSFV                              L+   ++  +L         IWRSRKGVKDEKDD LHDVY
Subjt:  EELKTKKIFVQHVETLRSSDATVAIVQSFVV---------------------------STLVTCGKKTLDL--------SIWRSRKGVKDEKDDHLHDVY

Query:  HIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE
        HIYDI+RLDTNEISSEAP+QEQ+SLEDQSMLSSYLPLLREFIPSAAAEIE
Subjt:  HIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE

XP_008463054.1 PREDICTED: RNA-directed DNA methylation 4 isoform X1 [Cucumis melo]

3.2e-53

99.13

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Query:  EELKTKKIFVQHVETLRSSDATVAIVQSFVVSTLVTCGKKTLDLSIWRSRKGVKDEKDDHLHDVYHIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYL
        EELKTKKIFVQHVETLRSSDATVA VQSFVVSTLVTCGKKTLDLSIWRSRKGVKDEKDDHLHDVYHIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYL
Subjt:  EELKTKKIFVQHVETLRSSDATVAIVQSFVVSTLVTCGKKTLDLSIWRSRKGVKDEKDDHLHDVYHIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYL

Query:  PLLREFIPSAAAEIE
        PLLREFIPSAAAEIE
Subjt:  PLLREFIPSAAAEIE

XP_022154907.1 RNA-directed DNA methylation 4 [Momordica charantia]

3.6e-33

59.33

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Query:  EELKTKKIFVQHVETLRSSDATVAIVQSFVV---------------------------STLVTCGKKTLDL--------SIWRSRKGVKDEKDDHLHDVY
        EELKTKKIFVQHVETL+SS+ATV IVQSFV                              L++  ++  ++         IWRSRKGVKD KDD LHD+Y
Subjt:  EELKTKKIFVQHVETLRSSDATVAIVQSFVV---------------------------STLVTCGKKTLDL--------SIWRSRKGVKDEKDDHLHDVY

Query:  HIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE
        HIYDI+RLDTN+ISSE P+QE +SLEDQSMLSSYLPLLREFIPSAAAEIE
Subjt:  HIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K5Q3 Uncharacterized protein

1.7e-36

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Query:  EELKTKKIFVQHVETLRSSDATVAIVQSFVV---------------------------STLVTCGKKTLDLS--------IWRSRKGVKDEKDDHLHDVY
        EELKTKKIFVQHVETLRSSDATV IVQSFV                              L+   ++  +L+        IWRSRKGVKDEKDD L DVY
Subjt:  EELKTKKIFVQHVETLRSSDATVAIVQSFVV---------------------------STLVTCGKKTLDLS--------IWRSRKGVKDEKDDHLHDVY

Query:  HIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE
        HIYDI+RLDTNEISSE+PKQEQ+SLEDQSMLSSYLPLLREFIPSAAAEIE
Subjt:  HIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE

A0A1S3CIC2 RNA-directed DNA methylation 4 isoform X1

1.5e-53

99.13

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Query:  EELKTKKIFVQHVETLRSSDATVAIVQSFVVSTLVTCGKKTLDLSIWRSRKGVKDEKDDHLHDVYHIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYL
        EELKTKKIFVQHVETLRSSDATVA VQSFVVSTLVTCGKKTLDLSIWRSRKGVKDEKDDHLHDVYHIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYL
Subjt:  EELKTKKIFVQHVETLRSSDATVAIVQSFVVSTLVTCGKKTLDLSIWRSRKGVKDEKDDHLHDVYHIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYL

Query:  PLLREFIPSAAAEIE
        PLLREFIPSAAAEIE
Subjt:  PLLREFIPSAAAEIE

A0A1S4DWJ0 RNA-directed DNA methylation 4-like isoform X1

1.1e-35

62.67

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Query:  EELKTKKIFVQHVETLRSSDATVAIVQSFVV---------------------------STLVTCGKKTLDL--------SIWRSRKGVKDEKDDHLHDVY
        EELKTKKI VQHVETLRSS+AT  IVQSFV                              L+   ++  +L         IWRSRKGVKDEKDD LHDVY
Subjt:  EELKTKKIFVQHVETLRSSDATVAIVQSFVV---------------------------STLVTCGKKTLDL--------SIWRSRKGVKDEKDDHLHDVY

Query:  HIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE
        HIYDI+RLDTNEISSEAP+QEQ+SLEDQSMLSSYLPLLREFIPSAAAEIE
Subjt:  HIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE

A0A5D3BU38 RNA-directed DNA methylation 4-like isoform X1

2.2e-36

63.33

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Query:  EELKTKKIFVQHVETLRSSDATVAIVQSFVV---------------------------STLVTCGKKTLDL--------SIWRSRKGVKDEKDDHLHDVY
        EELKTKKIFVQHVETLRSS+AT  IVQSFV                              L+   ++  +L         IWRSRKGVKDEKDD LHDVY
Subjt:  EELKTKKIFVQHVETLRSSDATVAIVQSFVV---------------------------STLVTCGKKTLDL--------SIWRSRKGVKDEKDDHLHDVY

Query:  HIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE
        HIYDI+RLDTNEISSEAP+QEQ+SLEDQSMLSSYLPLLREFIPSAAAEIE
Subjt:  HIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE

A0A6J1DMY7 RNA-directed DNA methylation 4

1.8e-33

59.33

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Query:  EELKTKKIFVQHVETLRSSDATVAIVQSFVV---------------------------STLVTCGKKTLDL--------SIWRSRKGVKDEKDDHLHDVY
        EELKTKKIFVQHVETL+SS+ATV IVQSFV                              L++  ++  ++         IWRSRKGVKD KDD LHD+Y
Subjt:  EELKTKKIFVQHVETLRSSDATVAIVQSFVV---------------------------STLVTCGKKTLDL--------SIWRSRKGVKDEKDDHLHDVY

Query:  HIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE
        HIYDI+RLDTN+ISSE P+QE +SLEDQSMLSSYLPLLREFIPSAAAEIE
Subjt:  HIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE

SwissProt top hits

e value

%identity

Alignment

Q8GYP3 RNA-directed DNA methylation 4

1.5e-13

34.64

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Query:  PSMSRAAPSLRPSGRRSSTQPLRRLQSPVFEELKTKKIFVQHVETLRSSDATVAIVQSFVVS--TLVTCGKKTLD-------------------------
        P++  +  S+  SG R  +         V E++K KK+ V+H+ET+  S+ T  I+ SF  S     +C K   +                         
Subjt:  PSMSRAAPSLRPSGRRSSTQPLRRLQSPVFEELKTKKIFVQHVETLRSSDATVAIVQSFVVS--TLVTCGKKTLD-------------------------

Query:  -------LSIWRSRKGVKDEKDDHLHDVYHIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE
                 IWRSRKG K    + +H+  H +D+IR+DT E    A  QE  SLEDQ ML+S+LPLLRE IP+AA EIE
Subjt:  -------LSIWRSRKGVKDEKDDHLHDVYHIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE

Arabidopsis top hits

e value

%identity

Alignment

AT2G30280.1 RNA-directed DNA methylation 4

1.1e-14

34.64

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Query:  PSMSRAAPSLRPSGRRSSTQPLRRLQSPVFEELKTKKIFVQHVETLRSSDATVAIVQSFVVS--TLVTCGKKTLD-------------------------
        P++  +  S+  SG R  +         V E++K KK+ V+H+ET+  S+ T  I+ SF  S     +C K   +                         
Subjt:  PSMSRAAPSLRPSGRRSSTQPLRRLQSPVFEELKTKKIFVQHVETLRSSDATVAIVQSFVVS--TLVTCGKKTLD-------------------------

Query:  -------LSIWRSRKGVKDEKDDHLHDVYHIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE
                 IWRSRKG K    + +H+  H +D+IR+DT E    A  QE  SLEDQ ML+S+LPLLRE IP+AA EIE
Subjt:  -------LSIWRSRKGVKDEKDDHLHDVYHIYDIIRLDTNEISSEAPKQEQISLEDQSMLSSYLPLLREFIPSAAAEIE

Sequences

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CDS sequence

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ATGAAGCGTGGAAGTAAAAAAAATAGAAGAAATTTCTCCACCTACTTCCTCGCGAACGACCGTTTCACGCGGGCTCGACTGGGCGTTGCCATTCTATCCACCGTGCATTG
CCGTCTCAGTTCGCCGGGCATTCGCCGATCGTTTGTCGGAGCTAAGCCGCAGCCGCGAACCATCCCGCGCACTAGCCCTTTGAACTGCAAGCTGAGAAGCGGGTCGTTCG
CTTCCTTGTCACGCGAGTCGTTCGTTTCTGTTGGTCCAAGCCGCACGAAGAAGCCCAGCCGAAGCTTCCTCCTCGCCGTTCTGTTTTTGGGCCACGTCCCATCGATGAGC
CGCGCCGCACCTAGCCTCCGTCCGTCCGGTCGCCGCTCTTCCACCCAGCCACTACGCCGCCTTCAGTCGCCAGTTTTTGAGGAATTAAAGACCAAGAAGATATTTGTACA
GCATGTGGAGACATTAAGAAGCTCTGATGCCACTGTTGCAATTGTGCAGTCTTTTGTGGTCAGCACTCTAGTCACTTGCGGCAAAAAAACGCTAGATTTGAGCATATGGA
GAAGTAGGAAAGGGGTTAAAGATGAAAAAGATGACCATTTACATGATGTATATCATATCTATGATATTATTCGTCTTGATACAAATGAAATATCGAGTGAAGCCCCAAAG
CAGGAACAAATATCTCTGGAGGATCAGAGTATGTTATCAAGTTACCTGCCGTTACTAAGGGAGTTTATTCCAAGTGCGGCTGCCGAAATTGAATAA

mRNA sequence

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Protein sequence

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MKRGSKKNRRNFSTYFLANDRFTRARLGVAILSTVHCRLSSPGIRRSFVGAKPQPRTIPRTSPLNCKLRSGSFASLSRESFVSVGPSRTKKPSRSFLLAVLFLGHVPSMS
RAAPSLRPSGRRSSTQPLRRLQSPVFEELKTKKIFVQHVETLRSSDATVAIVQSFVVSTLVTCGKKTLDLSIWRSRKGVKDEKDDHLHDVYHIYDIIRLDTNEISSEAPK
QEQISLEDQSMLSSYLPLLREFIPSAAAEIE

Pay0016754 (gene) of Melon (Payzawat) v1 genome