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Pay0016759 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0016759
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionDNA-directed RNA polymerases I, II, and III subunit RPABC5
Genome locationchr03:22579246..22580079
RNA-Seq ExpressionPay0016759
SyntenyPay0016759
Gene Ontology termsGO:0006360 - transcription by RNA polymerase I (biological process)
GO:0006366 - transcription by RNA polymerase II (biological process)
GO:0042797 - tRNA transcription by RNA polymerase III (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10
IPR020789 - RNA polymerases, subunit N, zinc binding site
IPR023580 - RNA polymerase subunit RPB10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OWM89654.1 hypothetical protein CDL15_Pgr024402 [Punica granatum]2.0e-1668.06Show/hide
Query:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVI
        MIIPVRCFTCGK  G K   YL      ++Q   + P  DALDALGLVRYCCRRMLMTHVDLIEKLLNY +I
Subjt:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVI

XP_006483895.1 DNA-directed RNA polymerase subunit 10-like protein [Citrus sinensis]4.0e-1759.57Show/hide
Query:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSSFSFVHSCLTLDKSDTS
        MIIPVRCFTCGK  G K  +YL      ++Q   + P  DALDALGLVRYCCRRMLMTHVDLIEKLLNY                 TLDKSDTS
Subjt:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSSFSFVHSCLTLDKSDTS

XP_010696273.1 PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Beta vulgaris subsp. vulgaris]2.0e-1657.45Show/hide
Query:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSSFSFVHSCLTLDKSDTS
        MIIPVRCFTCGK  G K  +YL +      +        DALDALGLVRYCCRRMLMTHVDLIEKLLNY                 TLDKSDTS
Subjt:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSSFSFVHSCLTLDKSDTS

XP_027347186.1 DNA-directed RNA polymerase subunit 10-like protein [Abrus precatorius]2.0e-1658.51Show/hide
Query:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSSFSFVHSCLTLDKSDTS
        MIIPVRCFTCGK  G K  +YL      ++Q   + P  DALDALGLVRYCCRRMLMTHVDLIEKLLNY                 TLDKSD S
Subjt:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSSFSFVHSCLTLDKSDTS

XP_031386410.1 DNA-directed RNA polymerases II, IV and V subunit 10 [Punica granatum]1.5e-1658.51Show/hide
Query:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSSFSFVHSCLTLDKSDTS
        MIIPVRCFTCGK  G K   YL      ++Q   + P  DALDALGLVRYCCRRMLMTHVDLIEKLLNY                 TL+KSDTS
Subjt:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSSFSFVHSCLTLDKSDTS

TrEMBL top hitse value%identityAlignment
A0A067GUJ6 Uncharacterized protein1.9e-1759.57Show/hide
Query:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSSFSFVHSCLTLDKSDTS
        MIIPVRCFTCGK  G K  +YL      ++Q   + P  DALDALGLVRYCCRRMLMTHVDLIEKLLNY                 TLDKSDTS
Subjt:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSSFSFVHSCLTLDKSDTS

A0A0K9RER0 Uncharacterized protein9.6e-1757.45Show/hide
Query:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSSFSFVHSCLTLDKSDTS
        MIIPVRCFTCGK  G K  +YL +      +        DALDALGLVRYCCRRMLMTHVDLIEKLLNY                 TLDKSDTS
Subjt:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSSFSFVHSCLTLDKSDTS

A0A218WTG8 DNA-directed RNA polymerases II, IV and V subunit 107.3e-1758.51Show/hide
Query:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSSFSFVHSCLTLDKSDTS
        MIIPVRCFTCGK  G K   YL      ++Q   + P  DALDALGLVRYCCRRMLMTHVDLIEKLLNY                 TL+KSDTS
Subjt:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSSFSFVHSCLTLDKSDTS

A0A7N0UK67 Uncharacterized protein5.6e-1758.51Show/hide
Query:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSSFSFVHSCLTLDKSDTS
        MIIPVRCFTCGK  G K  +YL      ++Q   E P  DALDA+GLVRYCCRRMLMTHVDLIEKLLNY                 TLDKS+TS
Subjt:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSSFSFVHSCLTLDKSDTS

A0A803KRF9 Uncharacterized protein9.6e-1757.45Show/hide
Query:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSSFSFVHSCLTLDKSDTS
        MIIPVRCFTCGK  G K  +YL +      +        DALDALGLVRYCCRRMLMTHVDLIEKLLNY                 TLDKSDTS
Subjt:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSSFSFVHSCLTLDKSDTS

SwissProt top hitse value%identityAlignment
Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC51.9e-1760.26Show/hide
Query:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSS
        MIIPVRCFTCGK  G K  +YL +      +        DALDAL LVRYCCRRMLMTHVDLIEKLLNY  +  S +S
Subjt:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSS

Q55AB6 DNA-directed RNA polymerases I, II, and III subunit rpabc51.2e-1662.82Show/hide
Query:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSS
        MIIPVRCFTCGK  G K  +YL +   QI     +    DALDAL L RYCCRRML+THVDLIEKLLNYT  PL+  S
Subjt:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSS

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 104.1e-1760.26Show/hide
Query:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSS
        MIIPVRCFTCGK  G K   YL +      +        DALDAL LVRYCCRRMLMTHVDLIEKLLNY  +  S +S
Subjt:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSS

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein3.7e-1861.33Show/hide
Query:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLS
        MI+PVRCFTCGK  G K  +YL +      +        DALDALGLVRYCCRRMLMTHVDLIEKLLNY  +  S
Subjt:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLS

Q9VC49 DNA-directed RNA polymerases I, II, and III subunit RPABC51.6e-1662.32Show/hide
Query:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNY
        MIIP+RCFTCGK  G K  SYL +   +  +        DALDALGL RYCCRRML+ HVDLIEKLLNY
Subjt:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNY

Arabidopsis top hitse value%identityAlignment
AT1G11475.1 RNA polymerases N / 8 kDa subunit2.9e-1860.26Show/hide
Query:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSS
        MIIPVRCFTCGK  G K   YL +      +        DALDAL LVRYCCRRMLMTHVDLIEKLLNY  +  S +S
Subjt:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSS

AT1G61700.1 RNA polymerases N / 8 kDa subunit2.7e-1961.33Show/hide
Query:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLS
        MI+PVRCFTCGK  G K  +YL +      +        DALDALGLVRYCCRRMLMTHVDLIEKLLNY  +  S
Subjt:  MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCATTCCAGTTCGTTGCTTCACTTGCGGAAAGGCTGATGGACAAAAAACTGGATCATACCTTATGATCTTCTGCAGGCAGATTATTCAGAAGGGTAAGGAAGCACC
ACTGTCTGATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTCGACCTTATTGAGAAGCTTCTTAATTACACAGTAATCCCTC
TCTCTCTCTCTTCTTTCTCTTTTGTTCATTCATGCTTGACTCTGGATAAGTCTGATACCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCATTCCAGTTCGTTGCTTCACTTGCGGAAAGGCTGATGGACAAAAAACTGGATCATACCTTATGATCTTCTGCAGGCAGATTATTCAGAAGGGTAAGGAAGCACC
ACTGTCTGATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTCGACCTTATTGAGAAGCTTCTTAATTACACAGTAATCCCTC
TCTCTCTCTCTTCTTTCTCTTTTGTTCATTCATGCTTGACTCTGGATAAGTCTGATACCAGTTAG
Protein sequenceShow/hide protein sequence
MIIPVRCFTCGKADGQKTGSYLMIFCRQIIQKGKEAPLSDALDALGLVRYCCRRMLMTHVDLIEKLLNYTVIPLSLSSFSFVHSCLTLDKSDTS