CuGenDBv2

Gene ID	Pay0016936
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Integrase
Genome location	chr02:8010771..8011503
RNA-Seq Expression	Pay0016936
Synteny	Pay0016936
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0053129.1 integrase [Cucumis melo var. makuwa]

5.6e-66

96.95

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNR+IFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKI
        IGQLLQ+GLKVSFEGDICAIKDQ GVLIAK+
Subjt:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKI

KAA0055928.1 integrase [Cucumis melo var. makuwa]

1.7e-67

99.24

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKI
        IGQLLQQGLKVSFEGDICAIKDQAGVLIAK+
Subjt:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKI

TYK15348.1 integrase [Cucumis melo var. makuwa]

1.5e-66

98.47

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNR+IFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKI
        IGQLLQ+GLKVSFEGDICAIKDQAGVLIAKI
Subjt:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKI

TYK28133.1 integrase [Cucumis melo var. makuwa]

1.7e-67

99.24

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKI
        IGQLLQQGLKVSFEGDICAIKDQAGVLIAK+
Subjt:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKI

XP_008462674.1 PREDICTED: uncharacterized protein LOC103500978 [Cucumis melo]

7.5e-71

94.56

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNV+EPTWYLDSGCSNHMTGNR+IFVTLDESFQSEVKTGDNT LQVKGQ DILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKICVVLCEQQQMEVIDIS
        IGQLLQ+GLKVSFEGDICAIKDQ  VLIAKI VVLCEQQQMEVIDIS
Subjt:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKICVVLCEQQQMEVIDIS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CI07 uncharacterized protein LOC103500978

3.6e-71

94.56

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNV+EPTWYLDSGCSNHMTGNR+IFVTLDESFQSEVKTGDNT LQVKGQ DILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKICVVLCEQQQMEVIDIS
        IGQLLQ+GLKVSFEGDICAIKDQ  VLIAKI VVLCEQQQMEVIDIS
Subjt:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKICVVLCEQQQMEVIDIS

A0A5A7UI36 Integrase

2.7e-66

96.95

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNR+IFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKI
        IGQLLQ+GLKVSFEGDICAIKDQ GVLIAK+
Subjt:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKI

A0A5A7ULH0 Integrase

8.4e-68

99.24

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKI
        IGQLLQQGLKVSFEGDICAIKDQAGVLIAK+
Subjt:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKI

A0A5D3CVS4 Integrase

7.1e-67

98.47

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNR+IFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKI
        IGQLLQ+GLKVSFEGDICAIKDQAGVLIAKI
Subjt:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKI

A0A5D3DWR8 Integrase

8.4e-68

99.24

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKI
        IGQLLQQGLKVSFEGDICAIKDQAGVLIAK+
Subjt:  IGQLLQQGLKVSFEGDICAIKDQAGVLIAKI

SwissProt top hits

e value

%identity

Alignment

P25601 Putative transposon Ty5-1 protein YCL075W

2.2e-04

31.94

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Query:  WYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSI
        W  D+GC++HM  +R+IF +   S + +   G    + + G G + +    GT ++ +V YVP L  NL+S+
Subjt:  WYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSI

Arabidopsis top hits

e value

%identity

Alignment

AT3G20980.1 Gag-Pol-related retrotransposon family protein

1.3e-12

43.01

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Query:  EPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVK--TGD---NTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQQGLKVSFE
        E  W + S  SNHMT +   F TLD S + +VK  +GD    T   V+G GD+   T +G K + NV YVPG++ N LS+ QL + G +VS E
Subjt:  EPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVK--TGD---NTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQQGLKVSFE

AT3G21000.1 Gag-Pol-related retrotransposon family protein

9.3e-11

31.86

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Query:  EQKKNDEGILFLACSVQDNVVEPT-----WYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKR-VTNVFYVPGLKHNLL
        +++K DE ++        N+   T     W +      +MT     F TLD +F++ V T D T L V+G+GD+ ++ K+G K+ + NV +VPGL  N+L
Subjt:  EQKKNDEGILFLACSVQDNVVEPT-----WYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKR-VTNVFYVPGLKHNLL

Query:  SIGQLLQQGLKVS
        S G+++ +   +S
Subjt:  SIGQLLQQGLKVS

Sequences

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CDS sequence

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ATGAATATGCATAAAGAACAAAAGAAAAATGATGAAGGCATTCTATTCCTCGCATGTAGTGTTCAAGACAATGTTGTGGAGCCTACATGGTATCTTGATAGTGGTTGTAG
TAACCACATGACAGGAAATAGAAATATATTTGTTACTTTGGATGAATCTTTCCAAAGTGAAGTGAAGACTGGTGATAATACCAGACTACAAGTCAAAGGCCAAGGTGATA
TTCTTGTGAAGACAAAGAAAGGAACAAAACGAGTTACAAATGTGTTCTATGTTCCAGGTCTAAAGCATAATCTTTTAAGTATTGGCCAACTGCTTCAACAAGGTTTAAAA
GTTTCATTTGAAGGTGACATATGTGCAATCAAAGATCAGGCCGGTGTTCTTATTGCCAAAATTTGTGTGGTCCTATGCGAACAACAACAAATGGAGGTAATTGATATTTC
ATAA

mRNA sequence

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Protein sequence

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MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQQGLK
VSFEGDICAIKDQAGVLIAKICVVLCEQQQMEVIDIS

Pay0016936 (gene) of Melon (Payzawat) v1 genome