CuGenDBv2

Gene ID	Pay0016954
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Pol protein
Genome location	chr01:19180833..19181377
RNA-Seq Expression	Pay0016954
Synteny	Pay0016954
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036584.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.3e-70

92.16

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Query:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY
        MG +LVQSTNEAIQKIRSRM TAQSRQKSYA+VRRKDLEFDVGDKVFLKV PMRAYRL LPPSLS V+DVFHVSMLRKYV DPSHVVDYEPLEIDENLSY
Subjt:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY

Query:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        TEQPVEVLA+EVKMLRNR+IPLVKVLWRN+RVEEATWEREDDMRSRYPELFEE
Subjt:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

KAA0036588.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.6e-77

99.35

Show/hide

Query:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY
        MGPELVQSTNEAIQKIRSRMQTAQSRQKSYA+VRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY
Subjt:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY

Query:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

KAA0046059.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.3e-70

92.16

Show/hide

Query:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY
        MG ELVQSTNEAIQKIRS M TAQSRQKSYA+VRRKDLEFDVGDKVFLKV PM+AYRL LPPSLS V+DVFHVSMLRKYV DPSHVVDYEPLEIDENLSY
Subjt:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY

Query:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
         EQPVEVLAREVKMLRNR+IPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

KAA0053309.1 pol protein [Cucumis melo var. makuwa]

1.7e-70

91.5

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Query:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY
        MGPELVQSTNEAIQKIRSRM   QSRQKSYA+VRRKDLEFDVGDKVFLKV PM+AYRL LPPSLS V+DVFHVSMLRKYV DPS+VVDYEPLEIDENLSY
Subjt:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY

Query:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        TEQPVEVLAREVKMLRNR+IPLVKVLWRNHRVEEATWEREDDMR+RYPELFEE
Subjt:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

TYJ98773.1 pol protein [Cucumis melo var. makuwa]

1.7e-70

92.11

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Query:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY
        MGPELVQ TNEAIQKIRSRMQTAQSRQK YA+VR+KDLEFDVGDKVFLKV PM  YRL LPPSLS V+DVFHVSMLRKYVSDPSHVVD+EPLEIDENLSY
Subjt:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY

Query:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
        TEQPVEVLAREVKMLRNR+IPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Subjt:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZ74 Ty3-gypsy retrotransposon protein

6.4e-71

92.16

Show/hide

Query:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY
        MG +LVQSTNEAIQKIRSRM TAQSRQKSYA+VRRKDLEFDVGDKVFLKV PMRAYRL LPPSLS V+DVFHVSMLRKYV DPSHVVDYEPLEIDENLSY
Subjt:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY

Query:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        TEQPVEVLA+EVKMLRNR+IPLVKVLWRN+RVEEATWEREDDMRSRYPELFEE
Subjt:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

A0A5A7T1B4 Ty3-gypsy retrotransposon protein

2.7e-77

99.35

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Query:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY
        MGPELVQSTNEAIQKIRSRMQTAQSRQKSYA+VRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY
Subjt:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY

Query:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

A0A5A7TXT7 Ty3-gypsy retrotransposon protein

1.1e-70

92.16

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Query:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY
        MG ELVQSTNEAIQKIRS M TAQSRQKSYA+VRRKDLEFDVGDKVFLKV PM+AYRL LPPSLS V+DVFHVSMLRKYV DPSHVVDYEPLEIDENLSY
Subjt:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY

Query:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
         EQPVEVLAREVKMLRNR+IPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

A0A5A7UIK8 Pol protein

8.4e-71

91.5

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Query:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY
        MGPELVQSTNEAIQKIRSRM   QSRQKSYA+VRRKDLEFDVGDKVFLKV PM+AYRL LPPSLS V+DVFHVSMLRKYV DPS+VVDYEPLEIDENLSY
Subjt:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY

Query:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        TEQPVEVLAREVKMLRNR+IPLVKVLWRNHRVEEATWEREDDMR+RYPELFEE
Subjt:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

A0A5D3BHM4 Pol protein

8.4e-71

92.11

Show/hide

Query:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY
        MGPELVQ TNEAIQKIRSRMQTAQSRQK YA+VR+KDLEFDVGDKVFLKV PM  YRL LPPSLS V+DVFHVSMLRKYVSDPSHVVD+EPLEIDENLSY
Subjt:  MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSY

Query:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
        TEQPVEVLAREVKMLRNR+IPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Subjt:  TEQPVEVLAREVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGACCTGAGTTAGTACAGTCTACTAACGAAGCGATACAGAAAATTAGATCTCGCATGCAGACCGCACAGAGTAGGCAGAAGAGTTATGCTAATGTTAGGCGGAAGGA
TCTTGAGTTTGATGTGGGAGACAAGGTGTTCTTGAAGGTAGAACCTATGAGAGCGTATCGCTTGGAGTTGCCACCATCACTCTCGGTAGTTTATGATGTGTTCCATGTTT
CTATGTTGAGGAAGTACGTGTCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATACTGAACAACCCGTTGAGGTGCTGGCTAGG
GAGGTGAAAATGTTAAGGAATAGACAAATTCCTTTGGTTAAAGTCTTATGGCGGAATCACCGAGTCGAAGAGGCTACATGGGAGCGAGAAGATGACATGAGGTCTCGTTA
TCCCGAATTGTTCGAAGAATAA

mRNA sequence

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Protein sequence

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MGPELVQSTNEAIQKIRSRMQTAQSRQKSYANVRRKDLEFDVGDKVFLKVEPMRAYRLELPPSLSVVYDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSYTEQPVEVLAR
EVKMLRNRQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

Pay0016954 (gene) of Melon (Payzawat) v1 genome