CuGenDBv2

Gene ID	Pay0017012
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Pol protein
Genome location	chr01:17723026..17723570
RNA-Seq Expression	Pay0017012
Synteny	Pay0017012
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR016197 - Chromo-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0045469.1 pol protein [Cucumis melo var. makuwa]

4.0e-73

83.43

Show/hide

Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLK-------------------GGETYRLALPPSLSTVHDVFH
        MGPELVQSTNEAIQKIRSR+HTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK     +                   G   YRLALPPSLSTVHDVFH
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLK-------------------GGETYRLALPPSLSTVHDVFH

Query:  VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARE+KTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

KAA0050751.1 pol protein [Cucumis melo var. makuwa]

2.3e-73

83.43

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLK-------------------GGETYRLALPPSLSTVHDVFH
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMK     +                   G   YRLALPPSLSTVHDVFH
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLK-------------------GGETYRLALPPSLSTVHDVFH

Query:  VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNK+IPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

KAA0051368.1 pol protein [Cucumis melo var. makuwa]

1.8e-73

83.98

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLK-------------------GGETYRLALPPSLSTVHDVFH
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK     +                   G   YRLALPPSLSTVHDVFH
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLK-------------------GGETYRLALPPSLSTVHDVFH

Query:  VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNK+IPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

KAA0054731.1 pol protein [Cucumis melo var. makuwa]

1.8e-73

83.98

Show/hide

Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLK-------------------GGETYRLALPPSLSTVHDVFH
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK     +                   G   YRLALPPSLSTVHDVFH
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLK-------------------GGETYRLALPPSLSTVHDVFH

Query:  VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNK+IPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

KAA0068212.1 pol protein [Cucumis melo var. makuwa]

3.6e-74

93.17

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLKGGETYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEP
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK          YRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEP
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLKGGETYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEP

Query:  LEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
        LEIDENLSYVEQPVEVLAREVKTLRNKEI LVKVLWRNHRVEEATWEREDDMRSRYPELFE
Subjt:  LEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TW62 Pol protein

1.9e-73

83.43

Show/hide

Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLK-------------------GGETYRLALPPSLSTVHDVFH
        MGPELVQSTNEAIQKIRSR+HTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK     +                   G   YRLALPPSLSTVHDVFH
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLK-------------------GGETYRLALPPSLSTVHDVFH

Query:  VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARE+KTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

A0A5A7U7V9 Reverse transcriptase

8.6e-74

83.98

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLK-------------------GGETYRLALPPSLSTVHDVFH
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK     +                   G   YRLALPPSLSTVHDVFH
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLK-------------------GGETYRLALPPSLSTVHDVFH

Query:  VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNK+IPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

A0A5A7UB07 Pol protein

1.1e-73

83.43

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLK-------------------GGETYRLALPPSLSTVHDVFH
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMK     +                   G   YRLALPPSLSTVHDVFH
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLK-------------------GGETYRLALPPSLSTVHDVFH

Query:  VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNK+IPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

A0A5A7UMF1 Pol protein

8.6e-74

83.98

Show/hide

Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLK-------------------GGETYRLALPPSLSTVHDVFH
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK     +                   G   YRLALPPSLSTVHDVFH
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLK-------------------GGETYRLALPPSLSTVHDVFH

Query:  VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNK+IPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  VSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

A0A5A7VIQ0 Pol protein

1.7e-74

93.17

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLKGGETYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEP
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK          YRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEP
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLKGGETYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEP

Query:  LEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
        LEIDENLSYVEQPVEVLAREVKTLRNKEI LVKVLWRNHRVEEATWEREDDMRSRYPELFE
Subjt:  LEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATACAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGA
CCTTGAGTTTGAGATAGGGGATAAGGTGTTCTTAAAGGTAGCACCTATGAAGGTGTCTTGCGTTTTGAAAGGAGGGGAAACTTATCGCTTGGCGTTGCCTCCATCACTCT
CGACAGTCCATGATGTGTTTCACGTTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATGTT
GAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAAGAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGGGA
GCGTGAAGATGACATGAGATCCCGTTATCCCGAACTGTTCGAGGAATAA

mRNA sequence

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Protein sequence

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MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKVSCVLKGGETYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYV
EQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

Pay0017012 (gene) of Melon (Payzawat) v1 genome