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Pay0017032 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0017032
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRetrotransposon protein
Genome locationchr03:9039309..9039890
RNA-Seq ExpressionPay0017032
SyntenyPay0017032
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR027806 - Harbinger transposase-derived nuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051443.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-6482.35Show/hide
Query:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA
        MD RTFAILCHLLR V+ LSSTEIVDVEEMV MFLH+LAHDVKN VIQR+FVRSGETVSRHFN++LLAV+RLY+ELIKR V NCLG LDGTYIKVNVP  
Subjt:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA

Query:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL
        DRPTFRTRKGEIATNVLGVCD   +FVYVLAGWEG A DS+ILRDA++R NGL
Subjt:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL

KAA0053186.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-6483.01Show/hide
Query:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA
        MD RTFAILCHLLR V+ LSSTEIVDVEEMV MFLH+LAHDVKN VIQR+FVRSGETVSRHFN++LLAV+RLY+ELIKR VSNCLG LDGTYIKVNVPA 
Subjt:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA

Query:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL
        DRPTFRTRKGEIATNVLGVC    +FVYVLAGWEG A DS+ILRDA++R NGL
Subjt:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL

KAA0059935.1 retrotransposon protein [Cucumis melo var. makuwa]5.6e-7798.04Show/hide
Query:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA
        MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLY+ELIKR VSNCLGTLDGTYIKVNVPAA
Subjt:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA

Query:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL
        DRPTFRTRKGEIATNVLGVCDRLANFVYVL GWEGFATDSQILRDALARANGL
Subjt:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL

KAA0062587.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-6583.66Show/hide
Query:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA
        MD RTFAILCHLLR V+ LSSTEIVDVEEMV MFLH+LAHDVKN VIQR+FVRSGETVSRHFN++LLAV+RLY+ELIKR V NCLG LDGTYIKVNVPA 
Subjt:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA

Query:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL
        DRPTFRTRKGEIATNVLGVCD   +FVYVLAGWEG A DSQILRDA++R NGL
Subjt:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL

XP_008466777.1 PREDICTED: uncharacterized protein LOC103504110 [Cucumis melo]5.6e-7798.04Show/hide
Query:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA
        MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLY+ELIKR VSNCLGTLDGTYIKVNVPAA
Subjt:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA

Query:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL
        DRPTFRTRKGEIATNVLGVCDRLANFVYVL GWEGFATDSQILRDALARANGL
Subjt:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL

TrEMBL top hitse value%identityAlignment
A0A1S3CS25 uncharacterized protein LOC1035041102.7e-7798.04Show/hide
Query:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA
        MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLY+ELIKR VSNCLGTLDGTYIKVNVPAA
Subjt:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA

Query:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL
        DRPTFRTRKGEIATNVLGVCDRLANFVYVL GWEGFATDSQILRDALARANGL
Subjt:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL

A0A5A7U6C1 Retrotransposon protein6.9e-6582.35Show/hide
Query:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA
        MD RTFAILCHLLR V+ LSSTEIVDVEEMV MFLH+LAHDVKN VIQR+FVRSGETVSRHFN++LLAV+RLY+ELIKR V NCLG LDGTYIKVNVP  
Subjt:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA

Query:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL
        DRPTFRTRKGEIATNVLGVCD   +FVYVLAGWEG A DS+ILRDA++R NGL
Subjt:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL

A0A5A7UG16 Retrotransposon protein6.9e-6583.01Show/hide
Query:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA
        MD RTFAILCHLLR V+ LSSTEIVDVEEMV MFLH+LAHDVKN VIQR+FVRSGETVSRHFN++LLAV+RLY+ELIKR VSNCLG LDGTYIKVNVPA 
Subjt:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA

Query:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL
        DRPTFRTRKGEIATNVLGVC    +FVYVLAGWEG A DS+ILRDA++R NGL
Subjt:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL

A0A5A7V216 Retrotransposon protein2.7e-7798.04Show/hide
Query:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA
        MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLY+ELIKR VSNCLGTLDGTYIKVNVPAA
Subjt:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA

Query:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL
        DRPTFRTRKGEIATNVLGVCDRLANFVYVL GWEGFATDSQILRDALARANGL
Subjt:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL

A0A5A7V6J9 Retrotransposon protein8.1e-6683.66Show/hide
Query:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA
        MD RTFAILCHLLR V+ LSSTEIVDVEEMV MFLH+LAHDVKN VIQR+FVRSGETVSRHFN++LLAV+RLY+ELIKR V NCLG LDGTYIKVNVPA 
Subjt:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAA

Query:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL
        DRPTFRTRKGEIATNVLGVCD   +FVYVLAGWEG A DSQILRDA++R NGL
Subjt:  DRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G28730.1 unknown protein3.8e-0729.03Show/hide
Query:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIK-------RSVSNCLGTLDGTYI
        M    F  LC +L     L S+  + ++E V +FL I A +     I  +F  + ET+ R F+ +L A+ RL  E I+       R++SN L   D  Y 
Subjt:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIK-------RSVSNCLGTLDGTYI

Query:  KVNVPAADRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALA
                 P      G  + NVL +CD    F Y   G  G   D+++L  A++
Subjt:  KVNVPAADRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALA

AT5G28950.1 unknown protein2.1e-1347.76Show/hide
Query:  NCLGTLDGTYIKVNVPAADRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALAR
        +C+G +D T+I   V     P+FR RKG+I+ N+L  C+    F+YVL+GWEG A DS++L DAL R
Subjt:  NCLGTLDGTYIKVNVPAADRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALAR

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)4.9e-2336.36Show/hide
Query:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRS------------VSNCLGTL
        MD   F  LC LL+T   L  T  + +E  + +FL I+ H+++   +Q  F  SGET+SRHFN +L AV+ + K+  + +              +C+G +
Subjt:  MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRS------------VSNCLGTL

Query:  DGTYIKVNVPAADRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL
        D  +I V V   ++  FR   G +  NVL        F YVLAGWEG A+D Q+L  AL R N L
Subjt:  DGTYIKVNVPAADRPTFRTRKGEIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACATGCGAACATTCGCAATTCTATGCCATTTACTTCGAACTGTTTCTGATCTTTCTTCGACCGAGATTGTTGATGTTGAGGAAATGGTAACAATGTTCTTGCACAT
CCTTGCCCATGATGTGAAGAATCACGTCATTCAAAGGAAATTTGTACGGTCTGGTGAGACAGTATCTCGACATTTTAACCTCATACTATTGGCTGTTGTTAGACTATACA
AGGAGTTGATAAAGAGATCTGTTTCGAATTGCCTTGGCACGTTAGACGGGACGTACATAAAGGTGAACGTCCCCGCAGCAGATCGACCTACATTTAGAACCCGTAAGGGG
GAAATTGCCACAAACGTACTGGGCGTCTGCGACAGACTCGCGAATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATTTGCGACAGACTCGCAGATTCTACGTGATGCCCT
TGCACGAGCAAATGGATTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGACATGCGAACATTCGCAATTCTATGCCATTTACTTCGAACTGTTTCTGATCTTTCTTCGACCGAGATTGTTGATGTTGAGGAAATGGTAACAATGTTCTTGCACAT
CCTTGCCCATGATGTGAAGAATCACGTCATTCAAAGGAAATTTGTACGGTCTGGTGAGACAGTATCTCGACATTTTAACCTCATACTATTGGCTGTTGTTAGACTATACA
AGGAGTTGATAAAGAGATCTGTTTCGAATTGCCTTGGCACGTTAGACGGGACGTACATAAAGGTGAACGTCCCCGCAGCAGATCGACCTACATTTAGAACCCGTAAGGGG
GAAATTGCCACAAACGTACTGGGCGTCTGCGACAGACTCGCGAATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATTTGCGACAGACTCGCAGATTCTACGTGATGCCCT
TGCACGAGCAAATGGATTATAA
Protein sequenceShow/hide protein sequence
MDMRTFAILCHLLRTVSDLSSTEIVDVEEMVTMFLHILAHDVKNHVIQRKFVRSGETVSRHFNLILLAVVRLYKELIKRSVSNCLGTLDGTYIKVNVPAADRPTFRTRKG
EIATNVLGVCDRLANFVYVLAGWEGFATDSQILRDALARANGL