CuGenDBv2

Gene ID	Pay0017061
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	chr04:3021197..3023307
RNA-Seq Expression	Pay0017061
Synteny	Pay0017061
Gene Ontology terms	GO:0032774 - RNA biosynthetic process (biological process) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004136341.2 uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus]

6.4e-113

98.53

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFTSSVNKP+ VSMNSRFR SAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_008466381.1 PREDICTED: uncharacterized protein LOC103503805 [Cucumis melo]

2.0e-114

100

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022132533.1 uncharacterized protein LOC111005365 isoform X1 [Momordica charantia]

1.3e-105

92.16

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLIT RKF  +V+KP  VSMNSRFR SAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022981205.1 uncharacterized protein LOC111480415 isoform X1 [Cucurbita maxima]

6.4e-105

92.16

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLI+ RKFT SVNK V VSMNSRFR SAEVPDFLPADWH AHKK+P+GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_038898556.1 uncharacterized protein LOC120086152 [Benincasa hispida]

3.5e-111

97.55

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLITNRKFTSSVNKPV VSM SRFR SAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEEN FKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LED5 Uncharacterized protein

3.1e-113

98.53

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFTSSVNKP+ VSMNSRFR SAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A1S3CR52 uncharacterized protein LOC103503805

9.7e-115

100

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A5D3E6H6 Uncharacterized protein

9.7e-115

100

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1BWI6 uncharacterized protein LOC111005365 isoform X1

6.3e-106

92.16

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLIT RKF  +V+KP  VSMNSRFR SAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1IYU2 uncharacterized protein LOC111480415 isoform X1

3.1e-105

92.16

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLI+ RKFT SVNK V VSMNSRFR SAEVPDFLPADWH AHKK+P+GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G25605.1 unknown protein

1.9e-78

78.05

Show/hide

Query:  SAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKER
        S++VPDFL ADW ++ +K P GPRL F+AE+A++HQLDAL+YND P  DYGIEVMY+FAGFDP  RSTYFGPFFDLGQFERFRR+FHHS+YRVLLGHK+R
Subjt:  SAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKER

Query:  KILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        K+LSSLFVEENRFKQR+WI+G RP+EEEIF+FTM QR+GGSWDGYWLTESLL+DGD FSGG+AY
Subjt:  KILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCATGTTGTTCGTCCTTATCCGCGGCTCCTTCATCCATGTCTTTGATTACCAACCGCAAATTCACGAGTTCTGTCAATAAACCTGTGACTGTTTCCATGAATTCTCG
CTTCAGAGTTTCTGCCGAAGTTCCCGATTTTCTTCCTGCTGATTGGCACGATGCACACAAGAAGGATCCTATAGGTCCAAGACTACATTTCACTGCAGAAGAAGCTATTC
AACACCAGCTAGATGCACTGAGATACAATGATCGACCCCATCAAGATTATGGAATTGAGGTCATGTACCAGTTTGCTGGGTTCGATCCTCTTCGAAGGTCAACATATTTC
GGTCCCTTCTTTGATTTGGGACAGTTTGAAAGATTTAGACGAGTATTCCATCATTCAACTTATCGTGTATTGTTAGGCCATAAAGAGAGAAAGATCTTGAGCAGTTTGTT
TGTAGAGGAGAACCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCCAAGGAAGAAGAAATATTTCAATTCACCATGGTTCAGAGGGTTGGCGGCTCGTGGGATG
GGTATTGGCTTACAGAGAGTTTACTAAACGATGGGGATGCATTTAGTGGAGGCTTGGCTTATTAA

mRNA sequence

Show/hide mRNA sequence

AGAAGAAGAAGCGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTAGATTCTCCTCGGGTGGAAGAGGATGTCATGT
TGTTCGTCCTTATCCGCGGCTCCTTCATCCATGTCTTTGATTACCAACCGCAAATTCACGAGTTCTGTCAATAAACCTGTGACTGTTTCCATGAATTCTCGCTTCAGAGT
TTCTGCCGAAGTTCCCGATTTTCTTCCTGCTGATTGGCACGATGCACACAAGAAGGATCCTATAGGTCCAAGACTACATTTCACTGCAGAAGAAGCTATTCAACACCAGC
TAGATGCACTGAGATACAATGATCGACCCCATCAAGATTATGGAATTGAGGTCATGTACCAGTTTGCTGGGTTCGATCCTCTTCGAAGGTCAACATATTTCGGTCCCTTC
TTTGATTTGGGACAGTTTGAAAGATTTAGACGAGTATTCCATCATTCAACTTATCGTGTATTGTTAGGCCATAAAGAGAGAAAGATCTTGAGCAGTTTGTTTGTAGAGGA
GAACCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCCAAGGAAGAAGAAATATTTCAATTCACCATGGTTCAGAGGGTTGGCGGCTCGTGGGATGGGTATTGGC
TTACAGAGAGTTTACTAAACGATGGGGATGCATTTAGTGGAGGCTTGGCTTATTAAGGAAAAGGACGTTGTGCTACAATTGGTTGGCTGGTTAGCAACCTTAGCACGGTA
TTGTTCCTTGTATATCTGAAATGTATATCATATGTCTTTGTTATTGGAAACTCTTATACGATTCTATAGAATTTGTATATATTCTCTGCATGGCTTCATTTTAACATCTC
TATCGATTTTTTGAGTGCACGAGGTTGGGATCGGTTGTGTGTTGACTTGAGTGGCGGTTGAGTCTCAAGGTTCAAGGTGCAATAAAGTGCAATAATCTTATGGAACTTAA
GAGCAAGGCACGAGGGGAAAAGAAGTTGGGTTTGGCATTTTTTTAAGGCAC

Protein sequence

Show/hide protein sequence

MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYF
GPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

Pay0017061 (gene) of Melon (Payzawat) v1 genome