CuGenDBv2

Gene ID	Pay0017262
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Integrase
Genome location	chr09:897184..898560
RNA-Seq Expression	Pay0017262
Synteny	Pay0017262
Gene Ontology terms	GO:0006397 - mRNA processing (biological process) GO:0015074 - DNA integration (biological process) GO:0003729 - mRNA binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0051603.1 integrase [Cucumis melo var. makuwa]

9.0e-120

94.58

Show/hide

Query:  VSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSA
        ++EL+LDM SNGNMLQ QLP+FSGKNFNQWSIQMKVLYGSQELWDIVERGY +VENQSELTNQQLVELRENRKKD+KALFFIYQ VDEFIFERISTATSA
Subjt:  VSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSA

Query:  KAAWDILRSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSLM
        KAAWDILRSTYQGEDK+KMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEH VVAIEESKDLSTLSINSLM
Subjt:  KAAWDILRSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSLM

Query:  GSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
        GSLQS ELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
Subjt:  GSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR

KAA0058949.1 integrase [Cucumis melo var. makuwa]

1.4e-117

96.14

Show/hide

Query:  MTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDIL
        MTSNGNMLQ QLP+FSGKNFNQWSIQMKVLYGSQELWDIVERGY +VENQSELTNQQLVELRENRKKD+KALFFIYQ VDEFIFERISTATSAKAAWDIL
Subjt:  MTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDIL

Query:  RSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSLMGSLQSDE
        RSTYQGEDK+KMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEH VVAIEESKDLSTLSINSLMGSLQS E
Subjt:  RSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSLMGSLQSDE

Query:  LRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
        LRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
Subjt:  LRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR

KAA0060690.1 integrase [Cucumis melo var. makuwa]

9.0e-120

95.02

Show/hide

Query:  VVSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATS
        VVSEL+LDM SNGNMLQ QLP+FSGKNFNQWSIQMKVLYGSQELWDIVERGY +VENQSELTNQQLVELRENRKKD+KALFFIYQ VDEFIFERISTATS
Subjt:  VVSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATS

Query:  AKAAWDILRSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSL
        AKAAWDILRSTYQGEDK+KMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEH VVAIEESKDLSTLSINSL
Subjt:  AKAAWDILRSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSL

Query:  MGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
        MGSLQS ELRLKQFD NPEEAFQMQTSFRGGSRGRRGGHGR
Subjt:  MGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR

TYK16225.1 integrase [Cucumis melo var. makuwa]

1.4e-120

95.44

Show/hide

Query:  VVSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATS
        VVSEL+LDM SNGNMLQ QLP+FSGKNFNQWSIQMKVLYGSQELWDIVERGY +VENQSELTNQQLVELRENRKKD+KALFFIYQ VDEFIFERISTATS
Subjt:  VVSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATS

Query:  AKAAWDILRSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSL
        AKAAWDILRSTYQGEDK+KMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEH VVAIEESKDLSTLSINSL
Subjt:  AKAAWDILRSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSL

Query:  MGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
        MGSLQS ELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
Subjt:  MGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR

XP_008459718.1 PREDICTED: uncharacterized protein LOC103498760 [Cucumis melo]

1.9e-122

100

Show/hide

Query:  MTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDIL
        MTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDIL
Subjt:  MTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDIL

Query:  RSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSLMGSLQSDE
        RSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSLMGSLQSDE
Subjt:  RSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSLMGSLQSDE

Query:  LRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
        LRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
Subjt:  LRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CAX3 uncharacterized protein LOC103498760

9.4e-123

100

Show/hide

Query:  MTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDIL
        MTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDIL
Subjt:  MTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDIL

Query:  RSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSLMGSLQSDE
        RSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSLMGSLQSDE
Subjt:  RSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSLMGSLQSDE

Query:  LRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
        LRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
Subjt:  LRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR

A0A5A7U6S3 Integrase

4.3e-120

94.58

Show/hide

Query:  VSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSA
        ++EL+LDM SNGNMLQ QLP+FSGKNFNQWSIQMKVLYGSQELWDIVERGY +VENQSELTNQQLVELRENRKKD+KALFFIYQ VDEFIFERISTATSA
Subjt:  VSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSA

Query:  KAAWDILRSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSLM
        KAAWDILRSTYQGEDK+KMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEH VVAIEESKDLSTLSINSLM
Subjt:  KAAWDILRSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSLM

Query:  GSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
        GSLQS ELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
Subjt:  GSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR

A0A5A7UZJ8 Integrase

6.9e-118

96.14

Show/hide

Query:  MTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDIL
        MTSNGNMLQ QLP+FSGKNFNQWSIQMKVLYGSQELWDIVERGY +VENQSELTNQQLVELRENRKKD+KALFFIYQ VDEFIFERISTATSAKAAWDIL
Subjt:  MTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDIL

Query:  RSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSLMGSLQSDE
        RSTYQGEDK+KMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEH VVAIEESKDLSTLSINSLMGSLQS E
Subjt:  RSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSLMGSLQSDE

Query:  LRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
        LRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
Subjt:  LRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR

A0A5A7V047 Integrase

4.3e-120

95.02

Show/hide

Query:  VVSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATS
        VVSEL+LDM SNGNMLQ QLP+FSGKNFNQWSIQMKVLYGSQELWDIVERGY +VENQSELTNQQLVELRENRKKD+KALFFIYQ VDEFIFERISTATS
Subjt:  VVSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATS

Query:  AKAAWDILRSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSL
        AKAAWDILRSTYQGEDK+KMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEH VVAIEESKDLSTLSINSL
Subjt:  AKAAWDILRSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSL

Query:  MGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
        MGSLQS ELRLKQFD NPEEAFQMQTSFRGGSRGRRGGHGR
Subjt:  MGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR

A0A5D3CXM6 Integrase

6.7e-121

95.44

Show/hide

Query:  VVSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATS
        VVSEL+LDM SNGNMLQ QLP+FSGKNFNQWSIQMKVLYGSQELWDIVERGY +VENQSELTNQQLVELRENRKKD+KALFFIYQ VDEFIFERISTATS
Subjt:  VVSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATS

Query:  AKAAWDILRSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSL
        AKAAWDILRSTYQGEDK+KMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEH VVAIEESKDLSTLSINSL
Subjt:  AKAAWDILRSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSL

Query:  MGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
        MGSLQS ELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
Subjt:  MGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G48720.1 unknown protein

2.0e-16

43.82

Show/hide

Query:  NMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAK
        N +  Q+P  +  N++ WS++MK + G+ ++W+IVE+G+I+ EN+  L+  Q   LR++RK+D+KAL  IYQ +DE  FE++  ATSAK
Subjt:  NMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAK

AT3G21000.1 Gag-Pol-related retrotransposon family protein

2.9e-07

21.98

Show/hide

Query:  NFNQWSIQMKVLYGSQELWDIVERGYIK-----VENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDILRSTYQGED--KIK
        ++  W+   K     Q LWD+V  G  +      E  + +  ++L + R+   KD KAL  +   + + +F +  +A+SAK  WD+LR   +     +++
Subjt:  NFNQWSIQMKVLYGSQELWDIVERGYIK-----VENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDILRSTYQGED--KIK

Query:  MIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSLM
         + ++ L  + + +KM + E+   + ++ L I+  L     E  D  + + +  ++   F+     +EE  D+  ++  SL+
Subjt:  MIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSLM

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGCGACGTAATTAGAAATTGCATTCCCCTTTCAACAATTGCATTCTTAGTGGTATCAGAGCTTCAGTTAGATATGACTTCAAATGGTAACATGTTGCAATCCCAACT
TCCAAAGTTCAGTGGGAAGAATTTTAATCAATGGAGTATTCAAATGAAAGTGTTATATGGCTCTCAAGAATTGTGGGATATTGTTGAAAGAGGATACATTAAAGTTGAGA
ATCAGAGTGAGCTCACAAATCAACAACTTGTTGAGTTAAGAGAAAATCGTAAGAAAGACGAAAAGGCTTTATTCTTTATTTATCAAGTTGTTGATGAATTTATTTTCGAG
AGAATTTCAACAGCTACTTCTGCAAAGGCGGCTTGGGATATTCTACGATCTACCTATCAAGGAGAAGATAAGATAAAGATGATAAGGTTACAAGCTCTCAGATCCGAATT
TGATTGCATTAAAATGAAAGAAACTGAAACTATTGAAGAATTTTTCAATCGTATTCTTGTAATTGTTAATAGTTTAAGATCAAATGGTGAAGAAGTAGGTGATCAAAGAG
TTGTTGAAAAGATTCTTAGAAGTATGCCAAGAAAATTTGAGCATAACGTCGTTGCAATTGAAGAATCGAAAGACTTATCTACGTTGTCTATAAATAGTTTGATGGGTTCT
CTTCAATCCGATGAGCTAAGATTAAAACAATTTGATGTTAACCCCGAGGAAGCTTTTCAAATGCAAACTTCATTTAGAGGCGGTTCACGTGGAAGACGTGGTGGTCATGG
AAGATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSDVIRNCIPLSTIAFLVVSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFE
RISTATSAKAAWDILRSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSLMGS
LQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR

Pay0017262 (gene) of Melon (Payzawat) v1 genome