; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Pay0017401 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0017401
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr07:16167674..16168021
RNA-Seq ExpressionPay0017401
SyntenyPay0017401
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047785.1 putative retrotransposon protein [Cucumis melo var. makuwa]3.2e-2456.52Show/hide
Query:  MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPL
        M+YNM++ +KSL+KLHGM KTA+LNIKS++E LM++KGKNPK R Q QG                          KPK  KEGE YHCK+IGHW+RN PL
Subjt:  MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPL

Query:  YLEELKNNKGSVPLT
        YLEELK NKGSVP T
Subjt:  YLEELKNNKGSVPLT

KAA0056624.1 hypothetical protein E6C27_scaffold288G001440 [Cucumis melo var. makuwa]8.5e-3869.57Show/hide
Query:  MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPL
        M+YNM+E++KSL++LHGM KTAKLNIK + E+LM+QKGKNPK R +DQGKG EKVVVK SKVD    P+ R KPK+PKP KEGECY CKKI HW R  P+
Subjt:  MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPL

Query:  YLEELKNNKGSVPLT
        YLEELK NKGS+P T
Subjt:  YLEELKNNKGSVPLT

KAA0066495.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.4e-3567.83Show/hide
Query:  MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPL
        ++YNM+ M+KSL++LHGM KT KLNIKS+ ++LM+QKGKNPK +  DQGKG  KV VKTSKVD F AP+PR K K+PKP KEGE YHCKKIG+W+RN PL
Subjt:  MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPL

Query:  YLEELKNNKGSVPLT
        YL+ LK NK SVP T
Subjt:  YLEELKNNKGSVPLT

TYK07553.1 putative retrotransposon protein [Cucumis melo var. makuwa]1.2e-3173.68Show/hide
Query:  TAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPLYLEELKNNKGSVPLT
        TAKLNIKS+ E+LM+QKGKNPK R +DQGKG EKVVVK SKVD    P+PR KPK+PKP KEGECY CKKI HW+R  PLYLEELK NKGS+P T
Subjt:  TAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPLYLEELKNNKGSVPLT

XP_016901775.1 PREDICTED: uncharacterized protein LOC107991397 [Cucumis melo]1.4e-5696.52Show/hide
Query:  MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPL
        M+YNMYEMQKSLSKLHGMPK AKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPR KPKKPKPSKE ECYHCKKIGHWERNYPL
Subjt:  MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPL

Query:  YLEELKNNKGSVPLT
        YLEELKNNKGSVPLT
Subjt:  YLEELKNNKGSVPLT

TrEMBL top hitse value%identityAlignment
A0A1S4E1A7 uncharacterized protein LOC1079913976.8e-5796.52Show/hide
Query:  MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPL
        M+YNMYEMQKSLSKLHGMPK AKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPR KPKKPKPSKE ECYHCKKIGHWERNYPL
Subjt:  MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPL

Query:  YLEELKNNKGSVPLT
        YLEELKNNKGSVPLT
Subjt:  YLEELKNNKGSVPLT

A0A5A7UN47 Uncharacterized protein4.1e-3869.57Show/hide
Query:  MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPL
        M+YNM+E++KSL++LHGM KTAKLNIK + E+LM+QKGKNPK R +DQGKG EKVVVK SKVD    P+ R KPK+PKP KEGECY CKKI HW R  P+
Subjt:  MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPL

Query:  YLEELKNNKGSVPLT
        YLEELK NKGS+P T
Subjt:  YLEELKNNKGSVPLT

A0A5A7VL77 Retrovirus-related Pol polyprotein from transposon TNT 1-946.6e-3667.83Show/hide
Query:  MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPL
        ++YNM+ M+KSL++LHGM KT KLNIKS+ ++LM+QKGKNPK +  DQGKG  KV VKTSKVD F AP+PR K K+PKP KEGE YHCKKIG+W+RN PL
Subjt:  MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPL

Query:  YLEELKNNKGSVPLT
        YL+ LK NK SVP T
Subjt:  YLEELKNNKGSVPLT

A0A5D3C6L2 Putative retrotransposon protein5.8e-3273.68Show/hide
Query:  TAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPLYLEELKNNKGSVPLT
        TAKLNIKS+ E+LM+QKGKNPK R +DQGKG EKVVVK SKVD    P+PR KPK+PKP KEGECY CKKI HW+R  PLYLEELK NKGS+P T
Subjt:  TAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPLYLEELKNNKGSVPLT

A0A5D3CZL7 Putative polyprotein6.8e-5796.52Show/hide
Query:  MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPL
        M+YNMYEMQKSLSKLHGMPK AKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPR KPKKPKPSKE ECYHCKKIGHWERNYPL
Subjt:  MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPL

Query:  YLEELKNNKGSVPLT
        YLEELKNNKGSVPLT
Subjt:  YLEELKNNKGSVPLT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTACAATATGTATGAAATGCAGAAGAGTTTGAGTAAGCTGCATGGAATGCCGAAAACTGCAAAGTTGAACATCAAATCTAATTATGAGATTTTGATGTTGCAAAA
AGGGAAGAATCCCAAGAATAGGGGACAAGATCAAGGAAAGGGTAATGAGAAAGTTGTTGTCAAGACATCAAAAGTTGATACTTTTATTGCACCTAAGCCAAGATTCAAAC
CTAAAAAGCCTAAGCCATCCAAGGAAGGAGAATGTTATCACTGTAAGAAAATTGGGCATTGGGAGAGGAACTATCCTCTTTATCTGGAAGAACTGAAGAACAACAAAGGA
AGTGTTCCTTTGACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACTACAATATGTATGAAATGCAGAAGAGTTTGAGTAAGCTGCATGGAATGCCGAAAACTGCAAAGTTGAACATCAAATCTAATTATGAGATTTTGATGTTGCAAAA
AGGGAAGAATCCCAAGAATAGGGGACAAGATCAAGGAAAGGGTAATGAGAAAGTTGTTGTCAAGACATCAAAAGTTGATACTTTTATTGCACCTAAGCCAAGATTCAAAC
CTAAAAAGCCTAAGCCATCCAAGGAAGGAGAATGTTATCACTGTAAGAAAATTGGGCATTGGGAGAGGAACTATCCTCTTTATCTGGAAGAACTGAAGAACAACAAAGGA
AGTGTTCCTTTGACTTAA
Protein sequenceShow/hide protein sequence
MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPLYLEELKNNKG
SVPLT