CuGenDBv2

Gene ID	Pay0017513
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Pentatricopeptide repeat-containing protein
Genome location	chr11:7414896..7418083
RNA-Seq Expression	Pay0017513
Synteny	Pay0017513
Gene Ontology terms	GO:0000373 - Group II intron splicing (biological process) GO:0010239 - chloroplast mRNA processing (biological process) GO:0009570 - chloroplast stroma (cellular component) GO:0003729 - mRNA binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0042408.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]

2.7e-93

100

Show/hide

Query:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
        MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
Subjt:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK

Query:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
        RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
Subjt:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF

TYK00992.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]

2.7e-93

100

Show/hide

Query:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
        MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
Subjt:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK

Query:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
        RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
Subjt:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF

XP_004140061.1 pentatricopeptide repeat-containing protein At5g27270 [Cucumis sativus]

6.1e-90

96.59

Show/hide

Query:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
        MESLKTSFLSPILLPPP IRTTRSPLK +NA+IFIIRLSVTPDPWSLSDGNPARPKPRSKNAK+PLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
Subjt:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK

Query:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
        RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEY+MRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
Subjt:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF

XP_008462786.1 PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g27270 [Cucumis melo]

2.7e-93

100

Show/hide

Query:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
        MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
Subjt:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK

Query:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
        RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
Subjt:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF

XP_038900459.1 pentatricopeptide repeat-containing protein At5g27270 [Benincasa hispida]

5.9e-85

93.18

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Query:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
        MESLKTSFLSPI LP PS R+TR  LK KNA+IFIIR SVTPDPWSLSDGNPARPKPRSKNAK+PLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
Subjt:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK

Query:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
        RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKT+GEYDMRMEMASFV KLTFREMCIVLKEQKGWRQVRDVF
Subjt:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KE22 PPR_long domain-containing protein

3.0e-90

96.59

Show/hide

Query:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
        MESLKTSFLSPILLPPP IRTTRSPLK +NA+IFIIRLSVTPDPWSLSDGNPARPKPRSKNAK+PLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
Subjt:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK

Query:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
        RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEY+MRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
Subjt:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF

A0A1S3CJB8 LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g27270

1.3e-93

100

Show/hide

Query:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
        MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
Subjt:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK

Query:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
        RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
Subjt:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF

A0A5A7THY4 Pentatricopeptide repeat-containing protein

1.3e-93

100

Show/hide

Query:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
        MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
Subjt:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK

Query:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
        RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
Subjt:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF

A0A5D3BQE2 Pentatricopeptide repeat-containing protein

1.3e-93

100

Show/hide

Query:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
        MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
Subjt:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK

Query:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
        RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
Subjt:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF

A0A6J1FXR3 pentatricopeptide repeat-containing protein At5g27270

4.2e-84

90.29

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Query:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
        MESLKTSFLSP+LLPPPS R++R PLK +  +IFIIR SVTPDPWSLSDGNPARPKPRSKNAK+PLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK
Subjt:  MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIK

Query:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDV
        RTPEQMVQYLEDD+NGHLYGKHVVAAI+HVRSLSQ+ EGEYDMRMEMASFV KLTFREMCIVLKEQKGWRQVRDV
Subjt:  RTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDV

SwissProt top hits

e value

%identity

Alignment

O04647 Pentatricopeptide repeat-containing protein At5g27270

3.5e-56

65.5

Show/hide

Query:  TSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQ
        T F   I LP    R +R  +K  ++        V PDPWSLSDGNP +PKPR +  K PLSDD+ARRIIK KAQYLS LRRNQG +A TPKWIKRTPEQ
Subjt:  TSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQ

Query:  MVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
        MVQYLEDDRNG +YGKHVVAAI+ VR LSQ+ +G  DMR  M+SFV KL+FR+MC+VLKEQ+GWRQVRD F
Subjt:  MVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF

Arabidopsis top hits

e value

%identity

Alignment

AT5G27270.1 Tetratricopeptide repeat (TPR)-like superfamily protein

2.5e-57

65.5

Show/hide

Query:  TSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQ
        T F   I LP    R +R  +K  ++        V PDPWSLSDGNP +PKPR +  K PLSDD+ARRIIK KAQYLS LRRNQG +A TPKWIKRTPEQ
Subjt:  TSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQ

Query:  MVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
        MVQYLEDDRNG +YGKHVVAAI+ VR LSQ+ +G  DMR  M+SFV KL+FR+MC+VLKEQ+GWRQVRD F
Subjt:  MVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAGTCTCTCAAGACTTCATTCCTCAGTCCAATCCTCCTCCCTCCCCCTTCCATTCGTACCACTCGCTCGCCGTTAAAGTACAAAAATGCCGAAATTTTCATCATTCG
GTTATCGGTAACGCCCGATCCTTGGTCTCTCAGTGATGGCAATCCAGCAAGACCAAAACCCAGGTCCAAAAACGCCAAAAGGCCTCTCTCCGATGACAACGCCCGCCGAA
TCATCAAGGCCAAGGCTCAGTACCTTAGTGTACTGCGTCGAAATCAGGGCCCAAGAGCTCAAACGCCCAAATGGATCAAGAGAACTCCGGAGCAGATGGTGCAGTACCTT
GAGGACGATAGAAATGGCCACCTCTATGGAAAGCATGTGGTAGCGGCGATTAGGCACGTGCGGAGTTTGTCTCAGAAAACCGAGGGAGAGTACGATATGAGGATGGAAAT
GGCTTCTTTTGTTGAAAAATTGACCTTTAGGGAGATGTGTATTGTACTTAAGGAGCAGAAGGGGTGGAGGCAGGTCAGAGATGTGTTTAAATTGTGTAGTAATTGGGAAA
TTGAGGTGTGGAGTAAATCGTTTGGTTTAACGAAGTTCTTAATCAGTCCCGTAGGATCAGTAAACACTATAATATTTCTGAGCGGGTCCAATCTTTCGGGCCCACTCGTG
AAAGACTTTAACTATACGGCGACGTGCCTCTACTTGATAAACCTTGCTTTGAAGTTGGGTACTGGGTCTAGAGGGAATTTGCCAAGGGTATCCCATAGACAATTCGTAGT
GGCTCACGTTCCAGCAGGGTTCCACAAAGGTTCTATGGAATTTGGGATCTCTTCCTTCCATATCGAAATTATGGTTTGCGGAAGTACTAATCTGTTGGATGTGGAAATTG
GTTCAAGTGTATTGGCTGTGTTTTATGCGTCTTTCCCTTATAAGGAATGGTCTCTTAGATTCTATAGAATAATACAGATATTGGGGTTAGTGGGCGTCGTCTTACTATAT
TCTCAGTGTAGATATTTGAGAAGGAATCAATCCGCCCTAACATCTGAACTGTTTGCTATAGCTCTGACTTTTGAGAGTGATTATGTTCGGCACCATTCTTGGTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYL
EDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVFKLCSNWEIEVWSKSFGLTKFLISPVGSVNTIIFLSGSNLSGPLV
KDFNYTATCLYLINLALKLGTGSRGNLPRVSHRQFVVAHVPAGFHKGSMEFGISSFHIEIMVCGSTNLLDVEIGSSVLAVFYASFPYKEWSLRFYRIIQILGLVGVVLLY
SQCRYLRRNQSALTSELFAIALTFESDYVRHHSW

Pay0017513 (gene) of Melon (Payzawat) v1 genome