CuGenDBv2

Gene ID	Pay0017517
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	RING-type E3 ubiquitin transferase
Genome location	chr01:28493730..28498169
RNA-Seq Expression	Pay0017517
Synteny	Pay0017517
Gene Ontology terms	GO:0016567 - protein ubiquitination (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0004842 - ubiquitin-protein transferase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0059624.1 U-box domain-containing protein 3 [Cucumis melo var. makuwa]

4.5e-24

87.14

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Query:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK
        VSC TTK LPLPKKCRNLVVVLKLLKV+LDDVISLKLSSD+LFY+ECESLD AVNEAREFIENWC K +K
Subjt:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK

XP_008451242.1 PREDICTED: U-box domain-containing protein 3 [Cucumis melo]

4.5e-24

87.14

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Query:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK
        VSC TTK LPLPKKCRNLVVVLKLLKV+LDDVISLKLSSD+LFY+ECESLD AVNEAREFIENWC K +K
Subjt:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK

XP_038897882.1 U-box domain-containing protein 3 isoform X1 [Benincasa hispida]

1.7e-23

85.71

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Query:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK
        VSC TTK LPLPKKCRNLVVVLKLLK++LDDVISLKLSSD+L Y+ECESLDAAVNEAREFIENWC K +K
Subjt:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK

XP_038897884.1 U-box domain-containing protein 3 isoform X2 [Benincasa hispida]

1.7e-23

85.71

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Query:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK
        VSC TTK LPLPKKCRNLVVVLKLLK++LDDVISLKLSSD+L Y+ECESLDAAVNEAREFIENWC K +K
Subjt:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK

XP_038897885.1 U-box domain-containing protein 3 isoform X3 [Benincasa hispida]

1.7e-23

85.71

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Query:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK
        VSC TTK LPLPKKCRNLVVVLKLLK++LDDVISLKLSSD+L Y+ECESLDAAVNEAREFIENWC K +K
Subjt:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K726 RING-type E3 ubiquitin transferase

1.1e-23

84.29

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Query:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK
        VSC TTK LPLPKKC+NLVVVLKLLKV+LDDVISLKLSSD+L Y+ECESLDAAVNEAREF+ENWC K +K
Subjt:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK

A0A1S3BS34 RING-type E3 ubiquitin transferase

2.2e-24

87.14

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Query:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK
        VSC TTK LPLPKKCRNLVVVLKLLKV+LDDVISLKLSSD+LFY+ECESLD AVNEAREFIENWC K +K
Subjt:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK

A0A5D3C862 RING-type E3 ubiquitin transferase

2.2e-24

87.14

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Query:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK
        VSC TTK LPLPKKCRNLVVVLKLLKV+LDDVISLKLSSD+LFY+ECESLD AVNEAREFIENWC K +K
Subjt:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK

A0A6J1H5W7 RING-type E3 ubiquitin transferase

8.5e-21

77.14

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Query:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK
        VSC TTK+LPLPK C+NL VVLK LK++LDDVISLKLSSD+L Y ECESLD AVN+AREFIENWC K +K
Subjt:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK

A0A6J1H675 RING-type E3 ubiquitin transferase

8.5e-21

77.14

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Query:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK
        VSC TTK+LPLPK C+NL VVLK LK++LDDVISLKLSSD+L Y ECESLD AVN+AREFIENWC K +K
Subjt:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK

SwissProt top hits

e value

%identity

Alignment

Q8GWV5 U-box domain-containing protein 3

5.0e-10

45.71

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Query:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK
        V+C T +  P+     N+V++LKLLK +LD+V+  K+ SD   Y  CE LD+ VN+AREF+E+W  K +K
Subjt:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK

Arabidopsis top hits

e value

%identity

Alignment

AT3G54790.1 ARM repeat superfamily protein

3.5e-11

45.71

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Query:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK
        V+C T +  P+     N+V++LKLLK +LD+V+  K+ SD   Y  CE LD+ VN+AREF+E+W  K +K
Subjt:  VSCLTTKALPLPKKCRNLVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK

AT3G54790.2 ARM repeat superfamily protein

5.6e-09

50.94

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Query:  LVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK
        +V++LKLLK +LD+V+  K+ SD   Y  CE LD+ VN+AREF+E+W  K +K
Subjt:  LVVVLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTK

Sequences

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CDS sequence

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ATGGCAAGAAGCACTTCCCAATCCCTATCCTCCTCTACATCTAACCCCGATGTCGTCACTTTGCAAGACTTTGCAACAATGACAGAGCCTTCACCTTTACCATCTCGGCT
CCAGTTGTTTCACCGCCTCTACTTGACTCTTTTGGACGAATCAAAAGGAAGAGATGATTCTTCTGCTGAAGATTGTAATGACCAGACTTATTCCAGAAGATATTCTAATG
ATCTTATTGTTGCTGAGGGATATGACCATCTTTGCAGCAGGAATGATCAAGTTTCATGCCTCACTACAAAGGCTTTGCCTCTTCCCAAGAAATGCAGGAATCTCGTTGTT
GTCTTAAAACTTCTGAAAGTCATCCTTGATGATGTCATTAGCCTCAAACTCTCTTCAGATCAGTTATTTTATACTGAATGTGAATCACTGGATGCAGCTGTAAATGAGGC
TCGAGAATTCATCGAAAACTGGTGTCTGAAACAAACAAAATTTGCAGTGTGA

mRNA sequence

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Protein sequence

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MARSTSQSLSSSTSNPDVVTLQDFATMTEPSPLPSRLQLFHRLYLTLLDESKGRDDSSAEDCNDQTYSRRYSNDLIVAEGYDHLCSRNDQVSCLTTKALPLPKKCRNLVV
VLKLLKVILDDVISLKLSSDQLFYTECESLDAAVNEAREFIENWCLKQTKFAV

Pay0017517 (gene) of Melon (Payzawat) v1 genome