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Pay0017525 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0017525
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRibonuclease H
Genome locationchr11:19126185..19126938
RNA-Seq ExpressionPay0017525
SyntenyPay0017525
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]9.8e-8782.83Show/hide
Query:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------
        C  CQYHAN IHQP EPLHPTV SWPFEAWGLDLVGPITPKSSAGHSYILAATDYFS+WAEAI LREAKKENVA+FIRTHIIYRY               
Subjt:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------

Query:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV
            DKL EKFKFKQYKSSMYNAA NGLAEAFNKTLCNLLKKIVSKSKRDWQE+IGEALWAYRT HRTP GVTPYSLVYGVE VLPLEREI SLRMAV
Subjt:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]4.4e-8783.33Show/hide
Query:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------
        C  CQYHAN IHQP EPLHPTV SWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAI LREAKKENVA+FIRTHIIYRY               
Subjt:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------

Query:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV
            DKL EKFKFKQYKSSMYNAA NGLAEAFNKTLCNLLKKIVSKSKRDWQE+IGEALWAYRT HRTP GVTPYSLVYGVE VLPLEREI SLRMAV
Subjt:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV

XP_031740568.1 uncharacterized protein LOC116403508 [Cucumis sativus]4.4e-8783.33Show/hide
Query:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------
        C  CQYHAN IHQP EPLHPTV SWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAI LREAKKENVA+FIRTHIIYRY               
Subjt:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------

Query:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV
            DKL EKFKFKQYKSSMYNAA NGLAEAFNKTLCNLLKKIVSKSKRDWQE+IGEALWAYRT HRTP GVTPYSLVYGVE VLPLEREI SLRMAV
Subjt:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]9.8e-8782.83Show/hide
Query:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------
        C  CQYHAN IHQP EPLHPTV SWPFEAWGLDLVGPITPKSSAGHSYILAATDYFS+WAEAI LREAKKENVA+FIRTHIIYRY               
Subjt:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------

Query:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV
            DKL EKFKFKQYKSSMYNAA NGLAEAFNKTLCNLLKKIVSKSKRDWQE+IGEALWAYRT HRTP GVTPYSLVYGVE VLPLEREI SLRMAV
Subjt:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]9.8e-8782.83Show/hide
Query:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------
        C  CQYHAN IHQP EPLHPTV SWPFEAWGLDLVGPITPKSSAGHSYILAATDYFS+WAEAI LREAKKENVA+FIRTHIIYRY               
Subjt:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------

Query:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV
            DKL EKFKFKQYKSSMYNAA NGLAEAFNKTLCNLLKKIVSKSKRDWQE+IGEALWAYRT HRTP GVTPYSLVYGVE VLPLEREI SLRMAV
Subjt:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV

TrEMBL top hitse value%identityAlignment
A0A1S3CNF0 uncharacterized protein LOC1035027773.4e-8577.78Show/hide
Query:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------
        C +CQ+HAN IHQP EPLHPT+ SWPFEAWGLDLVGPITPKSSAGHSYILA TDYFSKWAEA+PLREAKKEN+ NF++THIIYRY               
Subjt:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------

Query:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV
            DKL EKF FKQYKSSMYNAA NGLAEAFNKTLC+LLKK+VSK+KRDWQE+IGEALWAYRT HRTP GVTPYSLVYGVE VLPLEREI SLRMA+
Subjt:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV

A0A5A7T485 Reverse transcriptase2.0e-8580.81Show/hide
Query:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------
        C +CQYHAN IHQPLEPLHPT+ SWPFEAWGLDLVGPITPKSSAGH YILAATDYFSKW EAIPLREAKKENVANFIRTHIIYRY               
Subjt:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------

Query:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV
            DKL EKFKFKQYKSSMYNAA NGLAE F+KTLCNLLKKIV KSKRDWQERIGEALWAYRT HRTP  VTPYSLVYG++ VLPLEREI SLRMAV
Subjt:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV

A0A5A7VGB3 Ribonuclease H3.4e-8577.78Show/hide
Query:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------
        C +CQ+HAN IHQP EPLHPT+ SWPFEAWGLDLVGPITPKSSAGHSYILA TDYFSKWAEA+PLREAKKEN+ NF++THIIYRY               
Subjt:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------

Query:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV
            DKL EKF FKQYKSSMYNAA NGLAEAFNKTLC+LLKK+VSK+KRDWQE+IGEALWAYRT HRTP GVTPYSLVYGVE VLPLEREI SLRMA+
Subjt:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV

A0A5D3BV77 Reverse transcriptase2.0e-8580.81Show/hide
Query:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------
        C +CQYHAN IHQPLEPLHPT+ SWPFEAWGLDLVGPITPKSSAGH YILAATDYFSKW EAIPLREAKKENVANFIRTHIIYRY               
Subjt:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------

Query:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV
            DKL EKFKFKQYKSSMYNAA NGLAE F+KTLCNLLKKIV KSKRDWQERIGEALWAYRT HRTP  VTPYSLVYG++ VLPLEREI SLRMAV
Subjt:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV

A0A5D3E085 Integrase catalytic domain-containing protein1.5e-8582.32Show/hide
Query:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------
        C +CQYHAN IHQP EPLHPTV+SWPFEAWGLDLVGPITPKSSA HSYILAATDYFSKWAEAIPLREAKK NVANFIRTHI YRY               
Subjt:  CRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRY---------------

Query:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV
            DKL EKFKFKQ KSSMYNAA NGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRT HRT  GVTPYSLVYGVE VLPLEREI SLRMAV
Subjt:  ----DKLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV

SwissProt top hitse value%identityAlignment
A4FUB7 Gypsy retrotransposon integrase-like protein 11.4e-0624.61Show/hide
Query:  CRSCQYHAN-IIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFI-----------------RTHII
        C+ CQ   N +I  P +  H   +  P+    +DL+GP    S+  H Y +  TD F+KW   +PL +     ++  I                 R   I
Subjt:  CRSCQYHAN-IIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFI-----------------RTHII

Query:  YRYD-KLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREI
        ++ + +L E F  KQ   S  +  +N  AE+   T+   L K       DW + +    +A+   H  P   TPY  ++     +P   +I
Subjt:  YRYD-KLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREI

Q4R6I1 Gypsy retrotransposon integrase-like protein 15.2e-0624.06Show/hide
Query:  CRSCQYHAN-IIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRYD-------------
        C+ CQ   N +I  P +  H   +  P+    +DL+GP    S+  H Y +  TD F+KW   +PL +     V+  I  +I + Y              
Subjt:  CRSCQYHAN-IIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRYD-------------

Query:  ------KLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLP
              +LY  F  KQ   S  +  V+ + E    T+   L K  +    +W + +    +A+   H  P   TPY  ++     +P
Subjt:  ------KLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLP

Q5RBK0 Gypsy retrotransposon integrase-like protein 11.8e-0624.6Show/hide
Query:  CRSCQYHAN-IIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRYD-------------
        C+ CQ   N +I  P +  H   +  P+    +DL+GP    S+  H Y +  TD F+KW   +PL +     V+  I  +I + Y              
Subjt:  CRSCQYHAN-IIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRYD-------------

Query:  ------KLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLP
              +LY  F  KQ   S  + +VN   E+   T+   L K  +    +W + +    +A+   H  P   TPY  ++     +P
Subjt:  ------KLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLP

Q8K259 Gypsy retrotransposon integrase-like protein 11.8e-0625.57Show/hide
Query:  CRSCQYHAN-IIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRYD-------------
        C+ CQ   N +I  P +  H  ++  P+    +DL+GP    S+  H Y +  TD F+KW   +PL +     ++  I  +I + Y              
Subjt:  CRSCQYHAN-IIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRYD-------------

Query:  ------KLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPY
              +LY  F  K+   S  + +VN  AE    T+   L K  +     W E +    +A+   H  P   TPY
Subjt:  ------KLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPY

Q9NXP7 Gypsy retrotransposon integrase-like protein 11.8e-0624.6Show/hide
Query:  CRSCQYHAN-IIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRYD-------------
        C+ CQ   N +I  P +  H   +  P+    +DL+GP    S+  H Y +  TD F+KW   +PL +     V+  I  +I + Y              
Subjt:  CRSCQYHAN-IIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRYD-------------

Query:  ------KLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLP
              +LY  F  KQ   S  +  VN   E+   T+   L K  +    +W + +    +A+   H  P   TPY  ++     +P
Subjt:  ------KLYEKFKFKQYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTGGAAAGGAAGAGTCAATAAAAGCTCTAGAGGAAGCACATGCAGGTCTTGTCAATACCATGCAAACATCATACATCAACCTCTAGAGCCTCTACATCCAACTGT
GATTTCTTGGCCGTTTGAGGCTTGGGGACTCGATCTGGTTGGTCCTATTACACCAAAATCATCAGCAGGACATTCTTATATCCTTGCAGCAACAGATTATTTCTCAAAAT
GGGCTGAGGCCATTCCTTTGAGAGAGGCCAAGAAGGAGAACGTGGCAAACTTTATTCGTACCCACATCATCTATCGATACGATAAATTATATGAAAAATTCAAGTTCAAA
CAATACAAGTCATCTATGTACAACGCAGCTGTGAATGGCCTAGCAGAAGCATTCAATAAGACGTTATGCAATCTTCTAAAGAAAATTGTCTCCAAGTCGAAAAGGGATTG
GCAAGAAAGAATCGGTGAAGCATTGTGGGCTTATCGAACTAATCATCGCACTCCTATGGGGGTTACACCATATTCGCTTGTTTACGGTGTAGAGGTTGTCCTTCCCCTTG
AAAGAGAAATCTCATCATTAAGAATGGCAGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTGGAAAGGAAGAGTCAATAAAAGCTCTAGAGGAAGCACATGCAGGTCTTGTCAATACCATGCAAACATCATACATCAACCTCTAGAGCCTCTACATCCAACTGT
GATTTCTTGGCCGTTTGAGGCTTGGGGACTCGATCTGGTTGGTCCTATTACACCAAAATCATCAGCAGGACATTCTTATATCCTTGCAGCAACAGATTATTTCTCAAAAT
GGGCTGAGGCCATTCCTTTGAGAGAGGCCAAGAAGGAGAACGTGGCAAACTTTATTCGTACCCACATCATCTATCGATACGATAAATTATATGAAAAATTCAAGTTCAAA
CAATACAAGTCATCTATGTACAACGCAGCTGTGAATGGCCTAGCAGAAGCATTCAATAAGACGTTATGCAATCTTCTAAAGAAAATTGTCTCCAAGTCGAAAAGGGATTG
GCAAGAAAGAATCGGTGAAGCATTGTGGGCTTATCGAACTAATCATCGCACTCCTATGGGGGTTACACCATATTCGCTTGTTTACGGTGTAGAGGTTGTCCTTCCCCTTG
AAAGAGAAATCTCATCATTAAGAATGGCAGTGTAA
Protein sequenceShow/hide protein sequence
MSWKGRVNKSSRGSTCRSCQYHANIIHQPLEPLHPTVISWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSKWAEAIPLREAKKENVANFIRTHIIYRYDKLYEKFKFK
QYKSSMYNAAVNGLAEAFNKTLCNLLKKIVSKSKRDWQERIGEALWAYRTNHRTPMGVTPYSLVYGVEVVLPLEREISSLRMAV