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Pay0018028 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0018028
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionIntegrase
Genome locationchr01:6359014..6359644
RNA-Seq ExpressionPay0018028
SyntenyPay0018028
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051300.1 integrase [Cucumis melo var. makuwa]1.1e-3251.63Show/hide
Query:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL
        + ++FK SMKKEFEM++M L+HY LGI              KYA DLLKK  ++N  P +T ++  LKL K D+ +A D ++YR LVG+L+YLT TRPD+
Subjt:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL

Query:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD
        +F+VS+LSRFM   KRSHW+AEK+VL RYI+GT++ GI+ KK  ++VL G+ D
Subjt:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD

KAA0058949.1 integrase [Cucumis melo var. makuwa]5.2e-3250.98Show/hide
Query:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL
        + ++FK SMK EFEM++M L+HY LGI              KYA DLLKKF ++N  P +T ++  LKL K D+ +A D ++YR LVG+L+YLT TRPD+
Subjt:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL

Query:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD
        +F+VS+LSRFM   KRSHW+A K+VL RYI+GT++ GI+ KK  ++VL G+ D
Subjt:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD

KAA0060377.1 integrase [Cucumis melo var. makuwa]8.9e-3250.33Show/hide
Query:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL
        + ++FK SMK EFEM++M L+HY LGI              KYA DLLKKF ++N  P +T ++  LKL K D+ +A D ++YR LVG+L+YLT TRPD+
Subjt:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL

Query:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD
        +F+VS+LSRFM   KRSHW+A K+VL RYI+GT++ GI+ KK  ++V+ G+ D
Subjt:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD

KAA0060690.1 integrase [Cucumis melo var. makuwa]6.8e-3250.33Show/hide
Query:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL
        + ++FK SMKKEFEM+++ L+HY LGI              KYA DLLKKF ++N  P +T ++  LKL K D+ +A D ++YR LVG+L+YLT TRPD+
Subjt:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL

Query:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD
        +F+VS+LSRFM   KRSHW+A K+VL RYI+GT++ GI+ KK  ++V+ G+ D
Subjt:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD

TYJ95504.1 integrase [Cucumis melo var. makuwa]8.9e-3250.33Show/hide
Query:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL
        + ++FK SMK EFEM++M L+HY LGI              KYA DLLKKF ++N  P +T ++  LKL K D+ +A D ++YR LVG+L+YLT TRPD+
Subjt:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL

Query:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD
        +F+VS+LSRFM   KRSHW+A K+VL RYI+GT++ GI+ KK  ++V+ G+ D
Subjt:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD

TrEMBL top hitse value%identityAlignment
A0A5A7U800 Integrase5.1e-3351.63Show/hide
Query:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL
        + ++FK SMKKEFEM++M L+HY LGI              KYA DLLKK  ++N  P +T ++  LKL K D+ +A D ++YR LVG+L+YLT TRPD+
Subjt:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL

Query:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD
        +F+VS+LSRFM   KRSHW+AEK+VL RYI+GT++ GI+ KK  ++VL G+ D
Subjt:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD

A0A5A7UZJ8 Integrase2.5e-3250.98Show/hide
Query:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL
        + ++FK SMK EFEM++M L+HY LGI              KYA DLLKKF ++N  P +T ++  LKL K D+ +A D ++YR LVG+L+YLT TRPD+
Subjt:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL

Query:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD
        +F+VS+LSRFM   KRSHW+A K+VL RYI+GT++ GI+ KK  ++VL G+ D
Subjt:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD

A0A5A7V047 Integrase3.3e-3250.33Show/hide
Query:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL
        + ++FK SMKKEFEM+++ L+HY LGI              KYA DLLKKF ++N  P +T ++  LKL K D+ +A D ++YR LVG+L+YLT TRPD+
Subjt:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL

Query:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD
        +F+VS+LSRFM   KRSHW+A K+VL RYI+GT++ GI+ KK  ++V+ G+ D
Subjt:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD

A0A5D3BQ81 Integrase4.3e-3250.33Show/hide
Query:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL
        + ++FK SMK EFEM++M L+HY LGI              KYA DLLKKF ++N  P +T ++  LKL K D+ +A D ++YR LVG+L+YLT TRPD+
Subjt:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL

Query:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD
        +F+VS+LSRFM   KRSHW+A K+VL RYI+GT++ GI+ KK  ++V+ G+ D
Subjt:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD

A0A5D3CLV1 Integrase4.3e-3250.33Show/hide
Query:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL
        + ++FK SMK EFEM++M L+HY LGI              KYA DLLKKF ++N  P +T ++  LKL K D+ +A D ++YR LVG+L+YLT TRPD+
Subjt:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL

Query:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD
        +F+VS+LSRFM   KRSHW+A K+VL RYI+GT++ GI+ KK  ++V+ G+ D
Subjt:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-0729.63Show/hide
Query:  MIEEFKESMKKEFEMTNMSLLHYSLGI---------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFD------ATIYRILVGNLIY
        +I + K  + K F+M ++      LG+                KY + +L++F +KN  P ST +   LKLSK       +         Y   VG+L+Y
Subjt:  MIEEFKESMKKEFEMTNMSLLHYSLGI---------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFD------ATIYRILVGNLIY

Query:  -LTITRPDLMFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD
         +  TRPD+  +V ++SRF+    + HW+A K +L RY+ GT    +      D +L GY+D
Subjt:  -LTITRPDLMFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD

P92519 Uncharacterized mitochondrial protein AtMg008101.4e-0831.85Show/hide
Query:  MKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDLMFSVSLLS
        +   F M ++  +HY LGI              KYA+ +L    + +  P ST + L L  S    +K  D + +R +VG L YLT+TRPD+ ++V+++ 
Subjt:  MKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDLMFSVSLLS

Query:  RFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKN
        + M     + +   K+VL RY+ GT+ HG++  KN
Subjt:  RFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKN

P93290 Uncharacterized mitochondrial protein AtMg002406.2e-0441.27Show/hide
Query:  IYLTITRPDLMFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD
        +YLTITRPDL F+V+ LS+F +  + +  +A  KVL  Y+ GTV  G+      D  L  ++D
Subjt:  IYLTITRPDLMFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.5e-1335.37Show/hide
Query:  ESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDLMFSVSL
        +++ + F + +   LHY LGI              +Y  DLL +  +    P +T +    KLS +  +K  D T YR +VG+L YL  TRPD+ ++V+ 
Subjt:  ESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDLMFSVSL

Query:  LSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD
        LS+FM      H +A K++L RY+ GT +HGI  KK     L  YSD
Subjt:  LSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.1e-1535.95Show/hide
Query:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL
        +++   +++ + F +     LHY LGI              +Y  DLL +  +    P +T +    KL+ H  +K  D T YR +VG+L YL  TRPDL
Subjt:  MIEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDL

Query:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD
         ++V+ LS++M      HW A K+VL RY+ GT DHGI  KK     L  YSD
Subjt:  MFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 84.4e-1332.24Show/hide
Query:  IEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDLM
        ++E K  +K  F++ ++  L Y LG+              KYA DLL +  +    P+S  ++  +  S H      DA  YR L+G L+YL ITR D+ 
Subjt:  IEEFKESMKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDLM

Query:  FSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD
        F+V+ LS+F    + +H +A  K+L  YI GTV  G+      +  L  +SD
Subjt:  FSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD

ATMG00240.1 Gag-Pol-related retrotransposon family protein4.4e-0541.27Show/hide
Query:  IYLTITRPDLMFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD
        +YLTITRPDL F+V+ LS+F +  + +  +A  KVL  Y+ GTV  G+      D  L  ++D
Subjt:  IYLTITRPDLMFSVSLLSRFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSD

ATMG00810.1 DNA/RNA polymerases superfamily protein1.0e-0931.85Show/hide
Query:  MKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDLMFSVSLLS
        +   F M ++  +HY LGI              KYA+ +L    + +  P ST + L L  S    +K  D + +R +VG L YLT+TRPD+ ++V+++ 
Subjt:  MKKEFEMTNMSLLHYSLGI-------------GKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDLMFSVSLLS

Query:  RFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKN
        + M     + +   K+VL RY+ GT+ HG++  KN
Subjt:  RFMAPLKRSHWKAEKKVLIRYIIGTVDHGIHSKKN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGAAGAATTCAAAGAGAGCATGAAAAAAGAATTTGAGATGACTAATATGAGTTTACTTCATTATTCTCTTGGCATTGGAAAGTATGCAAAAGATTTGTTG
AAAAAGTTCATAATAAAGAATACTTATCCTACCAGTACTCTTGTGGAGTTGGGTTTAAAGTTAAGCAAGCATGATGTTAGTAAAGCTTTTGATGCCACAATTTAT
AGAATTCTTGTTGGAAATTTAATATATTTAACTATAACTAGACCTGATCTTATGTTCTCAGTCAGTTTATTGAGTAGATTTATGGCCCCACTAAAGAGAAGTCAT
TGGAAAGCTGAAAAGAAGGTTCTAATTAGATATATTATAGGAACTGTTGATCATGGAATCCACTCTAAAAAGAATGTGGATAATGTTCTTGTTGGCTACAGTGAT
ATTGCTAGGCACTTTGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTGAAGAATTCAAAGAGAGCATGAAAAAAGAATTTGAGATGACTAATATGAGTTTACTTCATTATTCTCTTGGCATTGGAAAGTATGCAAAAGATTTGTTG
AAAAAGTTCATAATAAAGAATACTTATCCTACCAGTACTCTTGTGGAGTTGGGTTTAAAGTTAAGCAAGCATGATGTTAGTAAAGCTTTTGATGCCACAATTTAT
AGAATTCTTGTTGGAAATTTAATATATTTAACTATAACTAGACCTGATCTTATGTTCTCAGTCAGTTTATTGAGTAGATTTATGGCCCCACTAAAGAGAAGTCAT
TGGAAAGCTGAAAAGAAGGTTCTAATTAGATATATTATAGGAACTGTTGATCATGGAATCCACTCTAAAAAGAATGTGGATAATGTTCTTGTTGGCTACAGTGAT
ATTGCTAGGCACTTTGGCTAA
Protein sequenceShow/hide protein sequence
MIEEFKESMKKEFEMTNMSLLHYSLGIGKYAKDLLKKFIIKNTYPTSTLVELGLKLSKHDVSKAFDATIYRILVGNLIYLTITRPDLMFSVSLLSRFMAPLKRSH
WKAEKKVLIRYIIGTVDHGIHSKKNVDNVLVGYSDIARHFG