CuGenDBv2

Gene ID	Pay0018075
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr09:4983866..4984950
RNA-Seq Expression	Pay0018075
Synteny	Pay0018075
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0042393 - histone binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0038009.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.4e-160

84.53

Show/hide

Query:  MDEMTYSTILLYLSDEVFRLVDE-ATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLP
        MDEM YSTIL+YLS EV RLVDE  TTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKM+QSKSLEENLNEFQKIVVDLNNI EKMSDENQAIILLNSLP
Subjt:  MDEMTYSTILLYLSDEVFRLVDE-ATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLP

Query:  ETYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANV
        ETYRE                      T+NL+IKKERKDGELLMARGRSDKK WKGKEKSSRMNSN EARKCFLCHKEGHF KNCPLNKSREASTSEANV
Subjt:  ETYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANV

Query:  TDGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVP
        TDGYNS  IT GYDS ETGYESAEVLM+SH +IQDAWIM+SGCTYHMTPN+DF INFQKSDGGKVLLGDNGTCEVKGTGSVLIATHD MIRMLTNVRYVP
Subjt:  TDGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVP

Query:  ELKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSATKELKQ
        ELKRNLISL ELDRS YTIK+ENGI+KVTKGSLVKLR TL+N LYVLEG AVS SATK LKQ
Subjt:  ELKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSATKELKQ

KAA0046503.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.9e-163

85.96

Show/hide

Query:  MDEMTYSTILLYLSDEVFRLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLPE
        MDEM YSTILLYLSDEV RLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYK++QSKSLEENLNEFQKIVVDLNNI EKMSDENQ IILLNSLP+
Subjt:  MDEMTYSTILLYLSDEVFRLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLPE

Query:  TYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANVT
        TYRE                      T+NLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSN EARK FLCHKEGHF KNCPLNKSREA TSE NVT
Subjt:  TYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANVT

Query:  DGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPE
        DGYNS KITDGYDS ETGYESAEVLM+SH +IQDAWI +SGCTYHMTPNRDF INFQKSDGGKVLLGDNGTCEVKGTGSVLIATHD MIRMLTNVRYVPE
Subjt:  DGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPE

Query:  LKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSAT
        LKRNLISLG+LDRSGYTIKFENGI+KVTKGSLVKLR TLRNGLYVLEGTAVSG  +
Subjt:  LKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSAT

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

3.1e-152

80.56

Show/hide

Query:  MDEMTYSTILLYLSDEVFRLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLPE
        MDEM Y TILLYLSDEV RLVDEATTT ELWKKLESLYLTKSLPNKIYIKEKFFGYKM+QSK LEENL+EFQKIVVDLNNI EKMSDENQA+ILLNSLPE
Subjt:  MDEMTYSTILLYLSDEVFRLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLPE

Query:  TYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANVT
        TYRE                      T+NLEIKKERKDGELLMARGRS+KK+WKGKE+S R  S  ++RKCFLCHKEGHF KNCPLNKSREASTSEANVT
Subjt:  TYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANVT

Query:  DGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPE
        DGYNS +ITDG DS ETGYESAEVLM+SH +IQDAWIM+SGCT+HMTP+RDF  NFQK DGGKVLLGDNGTC+VKGTGSV IATHD M+R+LTNVRYVP+
Subjt:  DGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPE

Query:  LKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSA
        LKRNLISLGELDRSG TIK ENG++KVTKGSLVKLR TLR+GLYVLEGT VSGSA
Subjt:  LKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSA

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

1.2e-153

81.13

Show/hide

Query:  MDEMTYSTILLYLSDEVFRLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLPE
        MDEM YSTILLYLSDEV RLVDEATTT ELWKKLESLYLTKSL NKIYIKEKFFGYKM+QSKSLEENL+EFQKIVVDLNNI EKMSDENQA+ILLNSLPE
Subjt:  MDEMTYSTILLYLSDEVFRLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLPE

Query:  TYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANVT
        TYRE                      T+NLEIKKERKDGELLMARGRS+KK+WKGKE+S R  S  ++RKCFLCHKEGHF KNCPLNKSREASTSEANVT
Subjt:  TYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANVT

Query:  DGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPE
        DGYNS +ITDGYDS ETGYESAEVLM+SH +IQDAWIM+SGCT+HMTP+RDF  NFQK DGGKVLLGDNGTC+VKGTGSV IATHD M+R+LTNVRYVP+
Subjt:  DGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPE

Query:  LKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSA
        LKRNLISLGELDRSG TIK ENG++KVTKGSLVKLR TLR+GLYVLEGT VSGSA
Subjt:  LKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSA

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

8.6e-155

81.41

Show/hide

Query:  MDEMTYSTILLYLSDEVFRLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLPE
        MDEM YSTILLYLSDEV RLVDEATTT ELWKKLESLYLTKSLPNKIYIKEKFFGYKM+QSKSLEENL+EFQKIVVDLNNI EKMSDENQA+ILLNSLPE
Subjt:  MDEMTYSTILLYLSDEVFRLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLPE

Query:  TYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANVT
        TYRE                      T+NLEIKKERKDGELLMARGRS+KK+WKGKE+S R  S  ++RKCFLCHKEGHF KNCPLNKSREASTSEANVT
Subjt:  TYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANVT

Query:  DGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPE
        DGYNS +ITDGYDS ETGYESAEVLM+SH +IQDAWIM+SGCT+HMTP+RDF  NFQK DGGKVLLGDNGTC+VKGTGSV IATHD M+R+LTNVRYVP+
Subjt:  DGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPE

Query:  LKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSA
        LKRNLISLGELDRSG TIK ENG++KVTKGSLVKLR TLR+GLYVLEGT VSGSA
Subjt:  LKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

1.5e-152

80.56

Show/hide

Query:  MDEMTYSTILLYLSDEVFRLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLPE
        MDEM Y TILLYLSDEV RLVDEATTT ELWKKLESLYLTKSLPNKIYIKEKFFGYKM+QSK LEENL+EFQKIVVDLNNI EKMSDENQA+ILLNSLPE
Subjt:  MDEMTYSTILLYLSDEVFRLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLPE

Query:  TYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANVT
        TYRE                      T+NLEIKKERKDGELLMARGRS+KK+WKGKE+S R  S  ++RKCFLCHKEGHF KNCPLNKSREASTSEANVT
Subjt:  TYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANVT

Query:  DGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPE
        DGYNS +ITDG DS ETGYESAEVLM+SH +IQDAWIM+SGCT+HMTP+RDF  NFQK DGGKVLLGDNGTC+VKGTGSV IATHD M+R+LTNVRYVP+
Subjt:  DGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPE

Query:  LKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSA
        LKRNLISLGELDRSG TIK ENG++KVTKGSLVKLR TLR+GLYVLEGT VSGSA
Subjt:  LKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSA

A0A5A7UB25 Putative gag-pol polyprotein

6.0e-154

81.13

Show/hide

Query:  MDEMTYSTILLYLSDEVFRLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLPE
        MDEM YSTILLYLSDEV RLVDEATTT ELWKKLESLYLTKSL NKIYIKEKFFGYKM+QSKSLEENL+EFQKIVVDLNNI EKMSDENQA+ILLNSLPE
Subjt:  MDEMTYSTILLYLSDEVFRLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLPE

Query:  TYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANVT
        TYRE                      T+NLEIKKERKDGELLMARGRS+KK+WKGKE+S R  S  ++RKCFLCHKEGHF KNCPLNKSREASTSEANVT
Subjt:  TYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANVT

Query:  DGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPE
        DGYNS +ITDGYDS ETGYESAEVLM+SH +IQDAWIM+SGCT+HMTP+RDF  NFQK DGGKVLLGDNGTC+VKGTGSV IATHD M+R+LTNVRYVP+
Subjt:  DGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPE

Query:  LKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSA
        LKRNLISLGELDRSG TIK ENG++KVTKGSLVKLR TLR+GLYVLEGT VSGSA
Subjt:  LKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSA

A0A5D3BRB2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.7e-161

84.53

Show/hide

Query:  MDEMTYSTILLYLSDEVFRLVDE-ATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLP
        MDEM YSTIL+YLS EV RLVDE  TTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKM+QSKSLEENLNEFQKIVVDLNNI EKMSDENQAIILLNSLP
Subjt:  MDEMTYSTILLYLSDEVFRLVDE-ATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLP

Query:  ETYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANV
        ETYRE                      T+NL+IKKERKDGELLMARGRSDKK WKGKEKSSRMNSN EARKCFLCHKEGHF KNCPLNKSREASTSEANV
Subjt:  ETYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANV

Query:  TDGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVP
        TDGYNS  IT GYDS ETGYESAEVLM+SH +IQDAWIM+SGCTYHMTPN+DF INFQKSDGGKVLLGDNGTCEVKGTGSVLIATHD MIRMLTNVRYVP
Subjt:  TDGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVP

Query:  ELKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSATKELKQ
        ELKRNLISL ELDRS YTIK+ENGI+KVTKGSLVKLR TL+N LYVLEG AVS SATK LKQ
Subjt:  ELKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSATKELKQ

A0A5D3BRV3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.9e-163

85.96

Show/hide

Query:  MDEMTYSTILLYLSDEVFRLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLPE
        MDEM YSTILLYLSDEV RLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYK++QSKSLEENLNEFQKIVVDLNNI EKMSDENQ IILLNSLP+
Subjt:  MDEMTYSTILLYLSDEVFRLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLPE

Query:  TYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANVT
        TYRE                      T+NLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSN EARK FLCHKEGHF KNCPLNKSREA TSE NVT
Subjt:  TYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANVT

Query:  DGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPE
        DGYNS KITDGYDS ETGYESAEVLM+SH +IQDAWI +SGCTYHMTPNRDF INFQKSDGGKVLLGDNGTCEVKGTGSVLIATHD MIRMLTNVRYVPE
Subjt:  DGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPE

Query:  LKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSAT
        LKRNLISLG+LDRSGYTIKFENGI+KVTKGSLVKLR TLRNGLYVLEGTAVSG  +
Subjt:  LKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSAT

A0A5D3DNU1 Putative gag-pol polyprotein

4.2e-155

81.41

Show/hide

Query:  MDEMTYSTILLYLSDEVFRLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLPE
        MDEM YSTILLYLSDEV RLVDEATTT ELWKKLESLYLTKSLPNKIYIKEKFFGYKM+QSKSLEENL+EFQKIVVDLNNI EKMSDENQA+ILLNSLPE
Subjt:  MDEMTYSTILLYLSDEVFRLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLPE

Query:  TYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANVT
        TYRE                      T+NLEIKKERKDGELLMARGRS+KK+WKGKE+S R  S  ++RKCFLCHKEGHF KNCPLNKSREASTSEANVT
Subjt:  TYRE----------------------TKNLEIKKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANVT

Query:  DGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPE
        DGYNS +ITDGYDS ETGYESAEVLM+SH +IQDAWIM+SGCT+HMTP+RDF  NFQK DGGKVLLGDNGTC+VKGTGSV IATHD M+R+LTNVRYVP+
Subjt:  DGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPE

Query:  LKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSA
        LKRNLISLGELDRSG TIK ENG++KVTKGSLVKLR TLR+GLYVLEGT VSGSA
Subjt:  LKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVSGSA

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.4e-38

30.77

Show/hide

Query:  MDEMTYSTILLYLSDEVFRLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLPE
        +DE   S I L+LSD+V   + +  T   +W +LESLY++K+L NK+Y+K++ +   M++  +   +LN F  ++  L N+  K+ +E++AI+LLNSLP 
Subjt:  MDEMTYSTILLYLSDEVFRLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLPE

Query:  TYR-------------ETKNLEI---------KKERKDGELLMARGR-------SDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREAS
        +Y              E K++           KK    G+ L+  GR       S+     G    S+  S    R C+ C++ GHF ++CP  +  +  
Subjt:  TYR-------------ETKNLEI---------KKERKDGELLMARGR-------SDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREAS

Query:  TSEANVTDGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLT
        TS     D  N+  +    D+V   + + E   M  +  +  W++++  ++H TP RD F  +   D G V +G+    ++ G G + I T+     +L 
Subjt:  TSEANVTDGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLT

Query:  NVRYVPELKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLY
        +VR+VP+L+ NLIS   LDR GY   F N   ++TKGSLV  +   R  LY
Subjt:  NVRYVPELKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLY

P25601 Putative transposon Ty5-1 protein YCL075W

3.4e-05

38.36

Show/hide

Query:  WIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPELKRNLISL
        WI ++GCT HM  +R  F +F +S     + G  G+  + G+G+V I T       L +V YVP+L  NLIS+
Subjt:  WIMNSGCTYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPELKRNLISL

Arabidopsis top hits

e value

%identity

Alignment

AT3G21000.1 Gag-Pol-related retrotransposon family protein

9.3e-06

23.78

Show/hide

Query:  GKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANVTDGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFI
        G  K  R+ S  E + C LC+K  H  ++C      +    E  +   Y    + +               + + T   D WI++     +MTP   +F 
Subjt:  GKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANVTDGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGCTYHMTPNRDFFI

Query:  NFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPELKRNLISLGELDRSGYTI
           ++    V   D     V+G G V I   +   + + NV +VP L RN++S G++    Y+I
Subjt:  NFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPELKRNLISLGELDRSGYTI

Sequences

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CDS sequence

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ATGGATGAAATGACCTATTCAACTATTCTTCTGTATCTGTCAGATGAAGTTTTTAGGCTAGTAGATGAGGCTACTACTACAGCGGAGTTGTGGAAAAAGCTAGAGAGCCT
TTACTTGACAAAGTCCTTGCCAAATAAGATATATATAAAGGAGAAATTCTTTGGATATAAAATGAACCAAAGTAAAAGTTTAGAAGAGAACCTGAATGAATTTCAGAAGA
TTGTAGTTGATCTCAATAACATCAGTGAGAAGATGTCGGATGAGAATCAAGCAATTATTCTTTTAAATTCATTACCAGAAACATATCGAGAGACTAAAAATCTCGAAATT
AAGAAAGAACGCAAGGATGGAGAGTTACTTATGGCTAGAGGAAGAAGTGACAAAAAGAACTGGAAAGGCAAAGAGAAGAGTTCCAGGATGAATTCAAATGAGGAAGCTAG
AAAGTGTTTCCTTTGCCATAAAGAAGGTCACTTTAATAAAAATTGCCCCTTGAATAAGAGCAGAGAAGCATCAACTAGTGAAGCTAATGTGACTGATGGGTATAATTCAA
CAAAGATTACTGATGGGTATGATTCAGTAGAGACTGGGTATGAGTCTGCAGAGGTCTTGATGATGTCTCATACAAATATACAGGATGCTTGGATCATGAATTCAGGGTGT
ACGTATCACATGACTCCTAATCGGGATTTTTTTATTAACTTTCAGAAAAGTGATGGGGGAAAAGTCTTATTGGGTGATAATGGTACCTGTGAAGTAAAGGGAACTGGTTC
AGTTCTAATTGCAACACATGACAGGATGATCAGAATGCTTACAAATGTAAGGTATGTACCAGAACTCAAACGTAATCTAATATCTCTAGGTGAATTAGATAGATCAGGTT
ATACCATAAAATTTGAGAATGGAATTGTGAAAGTTACTAAGGGTTCTTTGGTTAAATTGAGGGAAACATTGAGGAATGGTCTGTATGTGTTGGAGGGTACTGCAGTTTCA
GGTAGTGCCACTAAGGAATTAAAGCAATAG

mRNA sequence

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Protein sequence

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MDEMTYSTILLYLSDEVFRLVDEATTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMNQSKSLEENLNEFQKIVVDLNNISEKMSDENQAIILLNSLPETYRETKNLEI
KKERKDGELLMARGRSDKKNWKGKEKSSRMNSNEEARKCFLCHKEGHFNKNCPLNKSREASTSEANVTDGYNSTKITDGYDSVETGYESAEVLMMSHTNIQDAWIMNSGC
TYHMTPNRDFFINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDRMIRMLTNVRYVPELKRNLISLGELDRSGYTIKFENGIVKVTKGSLVKLRETLRNGLYVLEGTAVS
GSATKELKQ

Pay0018075 (gene) of Melon (Payzawat) v1 genome