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Pay0018230 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0018230
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionMitochondrial transcription termination factor family protein
Genome locationchr11:15142821..15143207
RNA-Seq ExpressionPay0018230
SyntenyPay0018230
Gene Ontology termsGO:0006353 - DNA-templated transcription, termination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047800.1 transcription termination factor MTERF6 [Cucumis melo var. makuwa]1.4e-6599.22Show/hide
Query:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC
        MILLNPRLIRYNIVPKLTEIVDFRA FGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC
Subjt:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC

Query:  GFLNAQIITLVGGYPPILIKSIEHSIEP
        GFLNAQIITLVGGYPPILIKSIEHSIEP
Subjt:  GFLNAQIITLVGGYPPILIKSIEHSIEP

KAE8646817.1 hypothetical protein Csa_005087 [Cucumis sativus]1.8e-5282.81Show/hide
Query:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC
        MILLNPRLIRY+IVPKLTEIVDF A+FGLDKQGLI KVLVKYP+LMGY+ DK LRPTL+F KSIGL D+ LQAIA GY EVLCRDANKVL  NFDFLKNC
Subjt:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC

Query:  GFLNAQIITLVGGYPPILIKSIEHSIEP
        GF +AQI+ LV GYPPILIKSIEHSIEP
Subjt:  GFLNAQIITLVGGYPPILIKSIEHSIEP

TYK01057.1 transcription termination factor MTERF6 [Cucumis melo var. makuwa]1.1e-6296.09Show/hide
Query:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC
        MILLNPRLI YNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYL GYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGY EVLCRDANKVLRLNFDFLKNC
Subjt:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC

Query:  GFLNAQIITLVGGYPPILIKSIEHSIEP
        GFL+AQIITLVGGYPPIL+KSIEHSIEP
Subjt:  GFLNAQIITLVGGYPPILIKSIEHSIEP

XP_008448401.1 PREDICTED: transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucumis melo]1.1e-6296.09Show/hide
Query:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC
        MILLNPRLI YNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYL GYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGY EVLCRDANKVLRLNFDFLKNC
Subjt:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC

Query:  GFLNAQIITLVGGYPPILIKSIEHSIEP
        GFL+AQIITLVGGYPPIL+KSIEHSIEP
Subjt:  GFLNAQIITLVGGYPPILIKSIEHSIEP

XP_031744171.1 LOW QUALITY PROTEIN: transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis sativus]1.8e-5282.81Show/hide
Query:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC
        MILLNPRLIRY+IVPKLTEIVDF A+FGLDKQGLI KVLVKYP+LMGY+ DK LRPTL+F KSIGL D+ LQAIA GY EVLCRDANKVL  NFDFLKNC
Subjt:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC

Query:  GFLNAQIITLVGGYPPILIKSIEHSIEP
        GF +AQI+ LV GYPPILIKSIEHSIEP
Subjt:  GFLNAQIITLVGGYPPILIKSIEHSIEP

TrEMBL top hitse value%identityAlignment
A0A0A0KE07 Uncharacterized protein8.6e-5382.81Show/hide
Query:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC
        MILLNPRLIRY+IVPKLTEIVDF A+FGLDKQGLI KVLVKYP+LMGY+ DK LRPTL+F KSIGL D+ LQAIA GY EVLCRDANKVL  NFDFLKNC
Subjt:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC

Query:  GFLNAQIITLVGGYPPILIKSIEHSIEP
        GF +AQI+ LV GYPPILIKSIEHSIEP
Subjt:  GFLNAQIITLVGGYPPILIKSIEHSIEP

A0A1S3BK85 transcription termination factor MTERF6, chloroplastic/mitochondrial-like5.4e-6396.09Show/hide
Query:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC
        MILLNPRLI YNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYL GYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGY EVLCRDANKVLRLNFDFLKNC
Subjt:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC

Query:  GFLNAQIITLVGGYPPILIKSIEHSIEP
        GFL+AQIITLVGGYPPIL+KSIEHSIEP
Subjt:  GFLNAQIITLVGGYPPILIKSIEHSIEP

A0A2R6R766 Transcription termination factor like1.8e-4267.19Show/hide
Query:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC
        M+LLNPR+I Y+I  KL++IVDF ASFGL K+G+IGKVLVK P++MGY+ DK LRPTLEFLKSIGL+++ LQ +AV + EVLCRD NK+LR NF +LK C
Subjt:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC

Query:  GFLNAQIITLVGGYPPILIKSIEHSIEP
        GF   QI  LV GYPPILIKSI +S+EP
Subjt:  GFLNAQIITLVGGYPPILIKSIEHSIEP

A0A5A7TX97 Transcription termination factor MTERF66.8e-6699.22Show/hide
Query:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC
        MILLNPRLIRYNIVPKLTEIVDFRA FGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC
Subjt:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC

Query:  GFLNAQIITLVGGYPPILIKSIEHSIEP
        GFLNAQIITLVGGYPPILIKSIEHSIEP
Subjt:  GFLNAQIITLVGGYPPILIKSIEHSIEP

A0A5D3BP20 Transcription termination factor MTERF65.4e-6396.09Show/hide
Query:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC
        MILLNPRLI YNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYL GYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGY EVLCRDANKVLRLNFDFLKNC
Subjt:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNC

Query:  GFLNAQIITLVGGYPPILIKSIEHSIEP
        GFL+AQIITLVGGYPPIL+KSIEHSIEP
Subjt:  GFLNAQIITLVGGYPPILIKSIEHSIEP

SwissProt top hitse value%identityAlignment
F4JVI3 Transcription termination factor MTERF5, chloroplastic9.3e-0434.43Show/hide
Query:  PRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGL
        P ++ Y+   KLT  V+F +  GL ++  IG++L + P +M Y+ +  LRPT+E+ +S+ +
Subjt:  PRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGL

Q9SZL6 Transcription termination factor MTERF6, chloroplastic/mitochondrial4.0e-3958.91Show/hide
Query:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLK-SIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKN
        MIL NPRLI Y+I  KLT IV F AS GLD+ G+IGKVLVK P+LMGY+ DK LRPT EFLK S+GL++ G++++ + + ++LCRD NK+L+ N+D+LK 
Subjt:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLK-SIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKN

Query:  CGFLNAQIITLVGGYPPILIKSIEHSIEP
        CGF ++QI T+V GYP ILIKS+++S++P
Subjt:  CGFLNAQIITLVGGYPPILIKSIEHSIEP

Arabidopsis top hitse value%identityAlignment
AT1G78930.1 Mitochondrial transcription termination factor family protein4.6e-0626.83Show/hide
Query:  PRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNCGFLNA
        P +   +I   L + + F   FG+       +++ KYP  + Y+ DK + P L++L  IG+++  +  +   +  +L    +KVLR  F+FL N      
Subjt:  PRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNCGFLNA

Query:  QIITLVGGYPPILIKSIEHSIEP
        + +  V  YP     S+E  I+P
Subjt:  QIITLVGGYPPILIKSIEHSIEP

AT4G38160.1 Mitochondrial transcription termination factor family protein2.8e-4058.91Show/hide
Query:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLK-SIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKN
        MIL NPRLI Y+I  KLT IV F AS GLD+ G+IGKVLVK P+LMGY+ DK LRPT EFLK S+GL++ G++++ + + ++LCRD NK+L+ N+D+LK 
Subjt:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLK-SIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKN

Query:  CGFLNAQIITLVGGYPPILIKSIEHSIEP
        CGF ++QI T+V GYP ILIKS+++S++P
Subjt:  CGFLNAQIITLVGGYPPILIKSIEHSIEP

AT4G38160.2 Mitochondrial transcription termination factor family protein2.8e-4058.91Show/hide
Query:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLK-SIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKN
        MIL NPRLI Y+I  KLT IV F AS GLD+ G+IGKVLVK P+LMGY+ DK LRPT EFLK S+GL++ G++++ + + ++LCRD NK+L+ N+D+LK 
Subjt:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLK-SIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKN

Query:  CGFLNAQIITLVGGYPPILIKSIEHSIEP
        CGF ++QI T+V GYP ILIKS+++S++P
Subjt:  CGFLNAQIITLVGGYPPILIKSIEHSIEP

AT4G38160.3 Mitochondrial transcription termination factor family protein2.8e-4058.91Show/hide
Query:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLK-SIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKN
        MIL NPRLI Y+I  KLT IV F AS GLD+ G+IGKVLVK P+LMGY+ DK LRPT EFLK S+GL++ G++++ + + ++LCRD NK+L+ N+D+LK 
Subjt:  MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLK-SIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKN

Query:  CGFLNAQIITLVGGYPPILIKSIEHSIEP
        CGF ++QI T+V GYP ILIKS+++S++P
Subjt:  CGFLNAQIITLVGGYPPILIKSIEHSIEP

AT5G64950.1 Mitochondrial transcription termination factor family protein4.2e-0731.2Show/hide
Query:  ILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGL---TDIGLQAIAVGYYEVLCRDANKVLRLNFDFLK
        I ++PR++ YN+   L   + F    G    GL GK + +   ++G +  K L PT+E LKSI      D+ +     G+  +L RD N  L  N  +L+
Subjt:  ILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGL---TDIGLQAIAVGYYEVLCRDANKVLRLNFDFLK

Query:  NCGFLNAQIITLVGGYPPILIKSIE
         CG + +Q+ +L+   P I   S E
Subjt:  NCGFLNAQIITLVGGYPPILIKSIE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTTGCTTAATCCTAGGCTTATTCGCTACAACATTGTGCCGAAACTTACTGAGATTGTGGACTTTCGTGCTAGTTTTGGCCTTGATAAGCAAGGGTTGATTGGCAA
AGTTTTGGTAAAATATCCATATCTTATGGGGTATAATTTCGACAAAATGTTACGTCCCACATTAGAGTTTTTGAAATCTATAGGTTTGACGGATATAGGTCTTCAAGCAA
TTGCAGTTGGCTATTATGAGGTTTTATGTAGGGATGCTAACAAAGTTTTGAGACTCAATTTTGATTTCTTGAAGAACTGTGGATTTCTAAATGCGCAAATTATAACTTTG
GTTGGCGGTTATCCTCCTATTTTGATTAAGAGCATTGAACATTCTATAGAACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGATTTTGCTTAATCCTAGGCTTATTCGCTACAACATTGTGCCGAAACTTACTGAGATTGTGGACTTTCGTGCTAGTTTTGGCCTTGATAAGCAAGGGTTGATTGGCAA
AGTTTTGGTAAAATATCCATATCTTATGGGGTATAATTTCGACAAAATGTTACGTCCCACATTAGAGTTTTTGAAATCTATAGGTTTGACGGATATAGGTCTTCAAGCAA
TTGCAGTTGGCTATTATGAGGTTTTATGTAGGGATGCTAACAAAGTTTTGAGACTCAATTTTGATTTCTTGAAGAACTGTGGATTTCTAAATGCGCAAATTATAACTTTG
GTTGGCGGTTATCCTCCTATTTTGATTAAGAGCATTGAACATTCTATAGAACCATGA
Protein sequenceShow/hide protein sequence
MILLNPRLIRYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLMGYNFDKMLRPTLEFLKSIGLTDIGLQAIAVGYYEVLCRDANKVLRLNFDFLKNCGFLNAQIITL
VGGYPPILIKSIEHSIEP