CuGenDBv2

Gene ID	Pay0018307
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr06:14397179..14397856
RNA-Seq Expression	Pay0018307
Synteny	Pay0018307
Gene Ontology terms	GO:0006749 - glutathione metabolic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004364 - glutathione transferase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.0e-103

90.18

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Query:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF
        KFQILTALEAYDLENFLESE EPPSKYL ST SSS SAT TPNP YKVWKR +RLISSWLLGSMSEEILNQM+HCKSAKEIW TLQGIFSSRYLAQAMQF
Subjt:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF

Query:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISETVLPSVKIVTQ
        K KLHNIKKGSM LKEYFLKI QCVDALASINKPVSSDDHILYIL GLGSDYQSMIS+ISARTDSPS+QEVMSLLLTQESQNESKLISET LPSV IVTQ
Subjt:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISETVLPSVKIVTQ

Query:  TTEKGAESYIRNSQNNYHNSHFYN
        TTEKGAESYIR +QNNYHN+H YN
Subjt:  TTEKGAESYIRNSQNNYHNSHFYN

KAA0053143.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

1.9e-113

97.32

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Query:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF
        KFQILTALEAYDLENF ESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLIS WLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF
Subjt:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF

Query:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISETVLPSVKIVTQ
        K KLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLG DYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISET LP VKIVTQ
Subjt:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISETVLPSVKIVTQ

Query:  TTEKGAESYIRNSQNNYHNSHFYN
        TTEKGAESYIRNSQNNYHNSHFYN
Subjt:  TTEKGAESYIRNSQNNYHNSHFYN

KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

3.4e-75

88.69

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Query:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF
        KFQILTALEAYDLENFLESE EPPSKYL STGSSS SATRTPNP YKVWKR +RLISSWLLGSMSEEILNQM+HCKSAKEIWGTLQGIFSSRYLAQAM+F
Subjt:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF

Query:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSI
        K KLHNIKK SM LKEYFLKIQ  VDALASINKPVSSDDHILYIL GLGSDYQSMIS+I  RT+SPS+
Subjt:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSI

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.0e-103

90.18

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Query:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF
        KFQILTALEAYDLENFLESE EPPSKYL ST SSS SAT TPNP YKVWKR +RLISSWLLGSMSEEILNQM+HCKSAKEIW TLQGIFSSRYLAQAMQF
Subjt:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF

Query:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISETVLPSVKIVTQ
        K KLHNIKKGSM LKEYFLKI QCVDALASINKPVSSDDHILYIL GLGSDYQSMIS+ISARTDSPS+QEVMSLLLTQESQNESKLISET LPSV IVTQ
Subjt:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISETVLPSVKIVTQ

Query:  TTEKGAESYIRNSQNNYHNSHFYN
        TTEKGAESYIR +QNNYHN+H YN
Subjt:  TTEKGAESYIRNSQNNYHNSHFYN

TYK18917.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

7.9e-72

90.51

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Query:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF
        KFQILTALEAYDLENFLESE EPPSKYL STGSSS SATRTPNP YKVWKR +RLISSWLLGSMSEEILNQM+HCKSAKEIWGTLQGIFSSRYLAQAM+F
Subjt:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF

Query:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISI
        K KLHNIKK SM LKEYFLKIQ  VDALASINKPVSSDDHILYIL GLGSDYQSMIS+
Subjt:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.0e-104

90.18

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Query:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF
        KFQILTALEAYDLENFLESE EPPSKYL ST SSS SAT TPNP YKVWKR +RLISSWLLGSMSEEILNQM+HCKSAKEIW TLQGIFSSRYLAQAMQF
Subjt:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF

Query:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISETVLPSVKIVTQ
        K KLHNIKKGSM LKEYFLKI QCVDALASINKPVSSDDHILYIL GLGSDYQSMIS+ISARTDSPS+QEVMSLLLTQESQNESKLISET LPSV IVTQ
Subjt:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISETVLPSVKIVTQ

Query:  TTEKGAESYIRNSQNNYHNSHFYN
        TTEKGAESYIR +QNNYHN+H YN
Subjt:  TTEKGAESYIRNSQNNYHNSHFYN

A0A5A7UB21 Keratin, type II cytoskeletal 1-like

9.0e-114

97.32

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Query:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF
        KFQILTALEAYDLENF ESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLIS WLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF
Subjt:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF

Query:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISETVLPSVKIVTQ
        K KLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLG DYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISET LP VKIVTQ
Subjt:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISETVLPSVKIVTQ

Query:  TTEKGAESYIRNSQNNYHNSHFYN
        TTEKGAESYIRNSQNNYHNSHFYN
Subjt:  TTEKGAESYIRNSQNNYHNSHFYN

A0A5A7VGJ8 Keratin, type II cytoskeletal 1-like

1.7e-75

88.69

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Query:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF
        KFQILTALEAYDLENFLESE EPPSKYL STGSSS SATRTPNP YKVWKR +RLISSWLLGSMSEEILNQM+HCKSAKEIWGTLQGIFSSRYLAQAM+F
Subjt:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF

Query:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSI
        K KLHNIKK SM LKEYFLKIQ  VDALASINKPVSSDDHILYIL GLGSDYQSMIS+I  RT+SPS+
Subjt:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSI

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.0e-104

90.18

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Query:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF
        KFQILTALEAYDLENFLESE EPPSKYL ST SSS SAT TPNP YKVWKR +RLISSWLLGSMSEEILNQM+HCKSAKEIW TLQGIFSSRYLAQAMQF
Subjt:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF

Query:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISETVLPSVKIVTQ
        K KLHNIKKGSM LKEYFLKI QCVDALASINKPVSSDDHILYIL GLGSDYQSMIS+ISARTDSPS+QEVMSLLLTQESQNESKLISET LPSV IVTQ
Subjt:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISETVLPSVKIVTQ

Query:  TTEKGAESYIRNSQNNYHNSHFYN
        TTEKGAESYIR +QNNYHN+H YN
Subjt:  TTEKGAESYIRNSQNNYHNSHFYN

A0A5D3D5T2 Keratin, type II cytoskeletal 1-like

3.8e-72

90.51

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Query:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF
        KFQILTALEAYDLENFLESE EPPSKYL STGSSS SATRTPNP YKVWKR +RLISSWLLGSMSEEILNQM+HCKSAKEIWGTLQGIFSSRYLAQAM+F
Subjt:  KFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQF

Query:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISI
        K KLHNIKK SM LKEYFLKIQ  VDALASINKPVSSDDHILYIL GLGSDYQSMIS+
Subjt:  KKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISI

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

2.7e-14

26.13

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Query:  QILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQFKK
        Q+    + Y+L  FL+     P        +  T A    NP+Y  WKR ++LI S +LG++S  +   +    +A +IW TL+ I+++       Q + 
Subjt:  QILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQFKK

Query:  KLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISETVLPSVKIVTQTT
        +L    KG+ ++ +Y   +    D LA + KP+  D+ +  +L  L  +Y+ +I  I+A+   P++ E+   LL  ES+  + + S TV+P    +T   
Subjt:  KLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISETVLPSVKIVTQTT

Query:  EKGAESYIRNSQNNYHNSHFYN
             +   N+ NN + ++ Y+
Subjt:  EKGAESYIRNSQNNYHNSHFYN

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

6.2e-11

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Query:  QILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQFKK
        Q+    + Y+L  FL+     P        +  T A    NP+Y  W+R ++LI S +LG++S  +   +    +A +IW TL+ I+++       Q   
Subjt:  QILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQFKK

Query:  KLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISETVLPSVKIVT-QT
                        L+     D LA + KP+  D+ +  +L  L  DY+ +I  I+A+   PS+ E+   L+ +ES+  +   +E V  +  +VT + 
Subjt:  KLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISETVLPSVKIVT-QT

Query:  TEKGAESYIRNSQNNYHNSH
        T        R    NY+N++
Subjt:  TEKGAESYIRNSQNNYHNSH

Arabidopsis top hits

e value

%identity

Alignment

AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.1e-07

25.93

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Query:  NPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQFKKKLHNIKKGSMSLKEYFLKIQQ
        +P Y+ W++ N ++  WL+ SM++++L  +++ ++A ++W  L+ +F      +  Q +++L  +++G  S++EYF K+ +
Subjt:  NPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQFKKKLHNIKKGSMSLKEYFLKIQQ

AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

2.1e-09

21.64

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Query:  WKRHNRLISSWLLGSMS-EEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQFKKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVG
        W++ + ++   L G+++ ++     V   ++++IW  ++  F +   A+A++   +L     G M + +Y+ K+++  D+L +++ PV+  + ++Y+L G
Subjt:  WKRHNRLISSWLLGSMS-EEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQFKKKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVG

Query:  LGSDYQSMISIISARTDSPSIQEVMSLLLTQESQ
        L   + ++I++I  R   PS  +  ++L  +E +
Subjt:  LGSDYQSMISIISARTDSPSIQEVMSLLLTQESQ

AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

2.0e-17

29.69

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Query:  GSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCK-SAKEIWGTLQGIFSSRYLAQAMQFKKKLHNIKKGSMSLKEYFLKIQQCVDALAS
        G    S+T TP  E K WK  + L+  W+ G++++ +L+ ++    +A+++W +L+ +F     A+A+QF+ +L       +S+ EY  K++   D L +
Subjt:  GSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCK-SAKEIWGTLQGIFSSRYLAQAMQFKKKLHNIKKGSMSLKEYFLKIQQCVDALAS

Query:  INKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSIQEVMSLLLTQESQ--NESK-LISETVLPSVKIVTQTTEKGAESYIRNSQNNYHN
        ++ P+S    ++++L GL   Y  ++++I  ++  PS  E  S+LL +ES+  N+SK  +S T  PS+  V  T  +  E Y +   NN  N
Subjt:  INKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSIQEVMSLLLTQESQ--NESK-LISETVLPSVKIVTQTTEKGAESYIRNSQNNYHN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAATTCCAAATTCTTACAGCATTAGAAGCTTATGATCTGGAAAATTTTCTTGAATCTGAATTAGAACCACCATCAAAATATCTCACATCCACTGGGAGTTCATCAAC
ATCCGCTACAAGAACACCAAATCCGGAATATAAGGTATGGAAACGCCATAATCGCCTTATCTCCTCATGGCTTCTAGGGTCCATGAGTGAAGAAATACTGAATCAGATGG
TTCATTGCAAATCTGCAAAAGAAATTTGGGGAACTCTTCAAGGTATTTTCTCTTCCCGTTACTTGGCACAAGCTATGCAATTTAAAAAAAAACTTCACAATATAAAGAAA
GGATCCATGTCATTAAAAGAATACTTTCTCAAAATACAGCAGTGTGTTGATGCCTTAGCTTCAATTAACAAACCAGTTTCATCTGATGATCATATTCTGTACATATTGGT
TGGTTTAGGATCTGATTATCAATCCATGATATCTATTATTTCCGCTAGAACTGACTCTCCTTCTATACAAGAAGTTATGTCTTTATTACTTACTCAGGAATCTCAAAATG
AGAGCAAATTAATCAGTGAGACTGTTTTACCTTCTGTTAAAATTGTCACCCAAACAACTGAAAAAGGAGCAGAATCTTACATAAGGAACAGCCAAAACAACTATCACAAC
AGTCACTTCTACAATTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MKFQILTALEAYDLENFLESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISSWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQFKKKLHNIKK
GSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGSDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISETVLPSVKIVTQTTEKGAESYIRNSQNNYHN
SHFYN

Pay0018307 (gene) of Melon (Payzawat) v1 genome