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Pay0018327 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0018327
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGag/pol protein
Genome locationchr04:4104056..4104625
RNA-Seq ExpressionPay0018327
SyntenyPay0018327
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035676.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-7985.19Show/hide
Query:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MN+SIVQLLAS+KLNG+NYA WKSNLNTILVVDDLR +LTEECPQT  SN NRA+          NEKARVYILASMSDVLAKKHE LATTKEI+DSLKG
Subjt:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNEL
        MFGQPEWSLRHEAIKYIYTKRMK+ TSVREHVLD MMHFNI EVNGGAIDEANQVSFILES  KSFIPFQTNASLNKIEFNLTTLLNEL
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNEL

KAA0041460.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-7883.6Show/hide
Query:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MN+SIVQLL+SEKLNG+NYAAWKSNLNTILVVDDLR VLTEECP+T  SN NR +          NEKARVYILASMSDVLAKKHESLAT KEIM+SLKG
Subjt:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNEL
        MFGQP+WSLRHEAIKYIYTKRMKE TS+REHVLD M+HFNI EVNGGAIDEANQVS ILES PKSFIPFQ NASLNKIEFNLTTLLNEL
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNEL

KAA0051181.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-7884.04Show/hide
Query:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MN+S+VQLLASEKLNG+NYA WKSNLNTILVVDDLR +LTEECPQTLASNTNRA+          NEK  VYIL+SMSDVL KKHESLAT KEIMDSLKG
Subjt:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNE
        MFGQPEWSLRHEAIKYIYTKRMKE TSVREHVLD MMHFNI EVNGGAIDEANQVSFILE   KSFIPFQ NASLNKIEFNLT LLNE
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNE

KAA0051988.1 gag/pol protein [Cucumis melo var. makuwa]3.7e-8085.19Show/hide
Query:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MN+SIVQLLASEKLN +NYAAWKSNLNTILVVDDLR VLTEECPQTL SN NRA+          NEKARVYILASM DVL KKHESLATTKEIMDSL G
Subjt:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNEL
        MFGQPEWSLR+EAIKYIYT+RMK+ TS+REHVLD MMHFNI EVNGGAIDEANQVSFILES PKSFIPFQTNASLNKIEFNLTTLLNEL
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNEL

TYK01653.1 gag/pol protein [Cucumis melo var. makuwa]2.4e-7986.24Show/hide
Query:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MNNSIVQLLASEKLN NNYAAWKSNLNTILVVDDLR VLTEECPQT ASN NRA+          N K  VYILASMSDVLAKKHESLATTKEI+DSLKG
Subjt:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNEL
        MFGQP+WSLRHEAIKYIYTKRMKE TSVREHVLD MMHFNIAEVNGG IDEA QVSFILES  KSFIPFQTNASLNKIEFNLTTLLNEL
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNEL

TrEMBL top hitse value%identityAlignment
A0A5A7T0E9 Gag/pol protein5.2e-8085.19Show/hide
Query:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MN+SIVQLLAS+KLNG+NYA WKSNLNTILVVDDLR +LTEECPQT  SN NRA+          NEKARVYILASMSDVLAKKHE LATTKEI+DSLKG
Subjt:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNEL
        MFGQPEWSLRHEAIKYIYTKRMK+ TSVREHVLD MMHFNI EVNGGAIDEANQVSFILES  KSFIPFQTNASLNKIEFNLTTLLNEL
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNEL

A0A5A7U9L2 Gag/pol protein1.8e-8085.19Show/hide
Query:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MN+SIVQLLASEKLN +NYAAWKSNLNTILVVDDLR VLTEECPQTL SN NRA+          NEKARVYILASM DVL KKHESLATTKEIMDSL G
Subjt:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNEL
        MFGQPEWSLR+EAIKYIYT+RMK+ TS+REHVLD MMHFNI EVNGGAIDEANQVSFILES PKSFIPFQTNASLNKIEFNLTTLLNEL
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNEL

A0A5A7UCD3 Gag/pol protein7.5e-7984.04Show/hide
Query:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MN+S+VQLLASEKLNG+NYA WKSNLNTILVVDDLR +LTEECPQTLASNTNRA+          NEK  VYIL+SMSDVL KKHESLAT KEIMDSLKG
Subjt:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNE
        MFGQPEWSLRHEAIKYIYTKRMKE TSVREHVLD MMHFNI EVNGGAIDEANQVSFILE   KSFIPFQ NASLNKIEFNLT LLNE
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNE

A0A5D3BPM3 Gag/pol protein1.2e-7986.24Show/hide
Query:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MNNSIVQLLASEKLN NNYAAWKSNLNTILVVDDLR VLTEECPQT ASN NRA+          N K  VYILASMSDVLAKKHESLATTKEI+DSLKG
Subjt:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNEL
        MFGQP+WSLRHEAIKYIYTKRMKE TSVREHVLD MMHFNIAEVNGG IDEA QVSFILES  KSFIPFQTNASLNKIEFNLTTLLNEL
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNEL

A0A5D3DL59 Gag/pol protein5.8e-7983.6Show/hide
Query:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MN+SIVQLL+SEKLNG+NYAAWKSNLNTILVVDDLR VLTEECP+T  SN NR +          NEKARVYILASMSDVLAKKHESLAT KEIM+SLKG
Subjt:  MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRAT----------NEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNEL
        MFGQP+WSLRHEAIKYIYTKRMKE TS+REHVLD M+HFNI EVNGGAIDEANQVS ILES PKSFIPFQ NASLNKIEFNLTTLLNEL
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAACTCGATAGTTCAATTATTAGCTTCCGAAAAACTTAATGGCAATAACTATGCGGCATGGAAATCAAATCTTAACACAATACTAGTAGTTGATGATTTAAGACT
TGTCTTAACTGAGGAATGTCCTCAAACCCTTGCCTCAAATACAAACCGAGCTACAAATGAGAAAGCCCGTGTCTACATCCTTGCTAGCATGTCAGATGTTTTAGCAAAGA
AGCATGAATCCTTAGCCACGACTAAAGAAATTATGGATTCTTTGAAAGGAATGTTTGGGCAACCAGAGTGGTCCCTTAGACACGAGGCAATCAAATACATTTACACTAAG
CGTATGAAGGAGGAGACCTCTGTTAGAGAACATGTCCTGGACAAGATGATGCACTTCAATATTGCTGAGGTAAATGGTGGTGCCATTGATGAGGCTAATCAAGTTAGCTT
TATCTTAGAGTCTTTTCCAAAGAGCTTCATACCATTCCAAACGAATGCGTCTCTAAATAAGATAGAATTTAACTTGACAACCCTTCTGAATGAGCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATAACTCGATAGTTCAATTATTAGCTTCCGAAAAACTTAATGGCAATAACTATGCGGCATGGAAATCAAATCTTAACACAATACTAGTAGTTGATGATTTAAGACT
TGTCTTAACTGAGGAATGTCCTCAAACCCTTGCCTCAAATACAAACCGAGCTACAAATGAGAAAGCCCGTGTCTACATCCTTGCTAGCATGTCAGATGTTTTAGCAAAGA
AGCATGAATCCTTAGCCACGACTAAAGAAATTATGGATTCTTTGAAAGGAATGTTTGGGCAACCAGAGTGGTCCCTTAGACACGAGGCAATCAAATACATTTACACTAAG
CGTATGAAGGAGGAGACCTCTGTTAGAGAACATGTCCTGGACAAGATGATGCACTTCAATATTGCTGAGGTAAATGGTGGTGCCATTGATGAGGCTAATCAAGTTAGCTT
TATCTTAGAGTCTTTTCCAAAGAGCTTCATACCATTCCAAACGAATGCGTCTCTAAATAAGATAGAATTTAACTTGACAACCCTTCTGAATGAGCTCTAA
Protein sequenceShow/hide protein sequence
MNNSIVQLLASEKLNGNNYAAWKSNLNTILVVDDLRLVLTEECPQTLASNTNRATNEKARVYILASMSDVLAKKHESLATTKEIMDSLKGMFGQPEWSLRHEAIKYIYTK
RMKEETSVREHVLDKMMHFNIAEVNGGAIDEANQVSFILESFPKSFIPFQTNASLNKIEFNLTTLLNEL