; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Pay0018336 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0018336
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr05:337152..338737
RNA-Seq ExpressionPay0018336
SyntenyPay0018336
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0042393 - histone binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR012337 - Ribonuclease H-like superfamily
IPR025724 - GAG-pre-integrase domain
IPR036397 - Ribonuclease H superfamily
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]5.8e-28895.64Show/hide
Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG--------
        YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG DSLTMSIVLDALKTRNLEIKKERKDG        
Subjt:  YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG--------

Query:  ---------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT
                 +R FRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT
Subjt:  ---------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT

Query:  PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
        PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
Subjt:  PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE

Query:  GTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYF
        GTTVS SAAIASGKVT+MSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYF
Subjt:  GTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYF

Query:  ISIIDDFSRKVWIYPLKQKDKAFGKFLE
        ISIIDDFSRKVWIYPLKQKD+AFGKFLE
Subjt:  ISIIDDFSRKVWIYPLKQKDKAFGKFLE

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]3.0e-28494.89Show/hide
Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNGHGDF+LWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAY TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSL NKI
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG--------
        YIKEKFFGYKMDQSK LEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG        
Subjt:  YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG--------

Query:  ---------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT
                 +R FRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDG DSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT
Subjt:  ---------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT

Query:  PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
        PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
Subjt:  PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE

Query:  GTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYF
        GTTVS SAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDY+HSDLWGPTKEVSMGGSRYF
Subjt:  GTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYF

Query:  ISIIDDFSRKVWIYPLKQKDKAFGKFLE
        ISIIDDFSRKVWIYPLKQKD+AFGKFLE
Subjt:  ISIIDDFSRKVWIYPLKQKDKAFGKFLE

KAA0067607.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]1.8e-25788.07Show/hide
Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFE+SKFNG+GDFA+WRKKIR ILVQHKVAKILDEE+LP+NITESEKRDMDEM Y TILLYLSDEVLRLVDEATTTGELWKKLESLYLTK LPN  
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG--------
          KEKFF YKMDQSK LEENLDEFQKI+VDL+NIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG        
Subjt:  YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG--------

Query:  ---------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT
                 +R  RSKSKGKSRKCFLCHK GHFKKNCPLNKSREASTSEANVTDGYN AEITD       GYESAEVLMVSHRDIQDAWIMDSGCTFHMT
Subjt:  ---------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT

Query:  PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
        PHRDFLTNFQK DGGKVLLGDNG CDVK TGSVQIATHD MVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
Subjt:  PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE

Query:  GTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYF
        GTTVS S AIASGKVT M MLWH RLAHVSERGLQALSQQGLL GVKNVEL FCEHCIMGK TRV+FGKGKHTTKGILDY+HSDLWGPTKE  MGGSRYF
Subjt:  GTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYF

Query:  ISIIDDFSRKVWIYPLKQKDKAFGKFLE
        ISIIDDFSRKVWIYPLKQKD+AFGKFLE
Subjt:  ISIIDDFSRKVWIYPLKQKDKAFGKFLE

TYK10877.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.6e-22486.53Show/hide
Query:  MDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPE
        MDEMAY TILLYLSDEVLRL DE TTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSK LEENL EFQKIVVDLNNIGEKMSDENQAVILLNSLPE
Subjt:  MDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPE

Query:  TYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG-----------------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVT
        TYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG                 +R FRSKSK KSRKCFLCHKEGHFKKNCPLNKSREASTSEANVT
Subjt:  TYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG-----------------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVT

Query:  DGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPK
        DGYNSAEITDG DSA+TGYESAEVLMVSHRDIQDAWIMD GCTFHMT H+DFLTNFQK DGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPK
Subjt:  DGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPK

Query:  LKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLEGTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPF
        LKRNLISLGELDRSGCTIKSENGVMKVTKGS VKLRGTLRHGLYVLEGTTVS SAAIAS                            GLLGGVKNVELPF
Subjt:  LKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLEGTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPF

Query:  CEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKDKAFGKFLE
        CEHCIM KSTRVKFGKGKHTTKGILDY+HSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKD+AFGKFLE
Subjt:  CEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKDKAFGKFLE

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]9.3e-28695.27Show/hide
Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAY TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG--------
        YIKEKFFGYKMDQSK LEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG        
Subjt:  YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG--------

Query:  ---------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT
                 +R FRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDG DSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT
Subjt:  ---------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT

Query:  PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
        PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
Subjt:  PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE

Query:  GTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYF
        GTTVS SAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDY+HSDLWGPTKEVSMGGSRYF
Subjt:  GTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYF

Query:  ISIIDDFSRKVWIYPLKQKDKAFGKFLE
        ISIIDDFSRKVWIYPLKQKD+AFGKFLE
Subjt:  ISIIDDFSRKVWIYPLKQKDKAFGKFLE

TrEMBL top hitse value%identityAlignment
A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class2.8e-28895.64Show/hide
Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG--------
        YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG DSLTMSIVLDALKTRNLEIKKERKDG        
Subjt:  YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG--------

Query:  ---------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT
                 +R FRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT
Subjt:  ---------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT

Query:  PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
        PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
Subjt:  PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE

Query:  GTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYF
        GTTVS SAAIASGKVT+MSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYF
Subjt:  GTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYF

Query:  ISIIDDFSRKVWIYPLKQKDKAFGKFLE
        ISIIDDFSRKVWIYPLKQKD+AFGKFLE
Subjt:  ISIIDDFSRKVWIYPLKQKDKAFGKFLE

A0A5A7UB25 Putative gag-pol polyprotein1.4e-28494.89Show/hide
Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNGHGDF+LWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAY TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSL NKI
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG--------
        YIKEKFFGYKMDQSK LEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG        
Subjt:  YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG--------

Query:  ---------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT
                 +R FRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDG DSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT
Subjt:  ---------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT

Query:  PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
        PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
Subjt:  PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE

Query:  GTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYF
        GTTVS SAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDY+HSDLWGPTKEVSMGGSRYF
Subjt:  GTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYF

Query:  ISIIDDFSRKVWIYPLKQKDKAFGKFLE
        ISIIDDFSRKVWIYPLKQKD+AFGKFLE
Subjt:  ISIIDDFSRKVWIYPLKQKDKAFGKFLE

A0A5A7VKC2 Retrotransposon protein, putative, Ty1-copia subclass8.8e-25888.07Show/hide
Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFE+SKFNG+GDFA+WRKKIR ILVQHKVAKILDEE+LP+NITESEKRDMDEM Y TILLYLSDEVLRLVDEATTTGELWKKLESLYLTK LPN  
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG--------
          KEKFF YKMDQSK LEENLDEFQKI+VDL+NIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG        
Subjt:  YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG--------

Query:  ---------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT
                 +R  RSKSKGKSRKCFLCHK GHFKKNCPLNKSREASTSEANVTDGYN AEITD       GYESAEVLMVSHRDIQDAWIMDSGCTFHMT
Subjt:  ---------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT

Query:  PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
        PHRDFLTNFQK DGGKVLLGDNG CDVK TGSVQIATHD MVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
Subjt:  PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE

Query:  GTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYF
        GTTVS S AIASGKVT M MLWH RLAHVSERGLQALSQQGLL GVKNVEL FCEHCIMGK TRV+FGKGKHTTKGILDY+HSDLWGPTKE  MGGSRYF
Subjt:  GTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYF

Query:  ISIIDDFSRKVWIYPLKQKDKAFGKFLE
        ISIIDDFSRKVWIYPLKQKD+AFGKFLE
Subjt:  ISIIDDFSRKVWIYPLKQKDKAFGKFLE

A0A5D3CFX6 Retrovirus-related Pol polyprotein from transposon TNT 1-947.6e-22586.53Show/hide
Query:  MDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPE
        MDEMAY TILLYLSDEVLRL DE TTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSK LEENL EFQKIVVDLNNIGEKMSDENQAVILLNSLPE
Subjt:  MDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPE

Query:  TYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG-----------------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVT
        TYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG                 +R FRSKSK KSRKCFLCHKEGHFKKNCPLNKSREASTSEANVT
Subjt:  TYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG-----------------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVT

Query:  DGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPK
        DGYNSAEITDG DSA+TGYESAEVLMVSHRDIQDAWIMD GCTFHMT H+DFLTNFQK DGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPK
Subjt:  DGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPK

Query:  LKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLEGTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPF
        LKRNLISLGELDRSGCTIKSENGVMKVTKGS VKLRGTLRHGLYVLEGTTVS SAAIAS                            GLLGGVKNVELPF
Subjt:  LKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLEGTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPF

Query:  CEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKDKAFGKFLE
        CEHCIM KSTRVKFGKGKHTTKGILDY+HSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKD+AFGKFLE
Subjt:  CEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKDKAFGKFLE

A0A5D3DNU1 Putative gag-pol polyprotein4.5e-28695.27Show/hide
Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAY TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG--------
        YIKEKFFGYKMDQSK LEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG        
Subjt:  YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDG--------

Query:  ---------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT
                 +R FRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDG DSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT
Subjt:  ---------KRIFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT

Query:  PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
        PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
Subjt:  PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE

Query:  GTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYF
        GTTVS SAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDY+HSDLWGPTKEVSMGGSRYF
Subjt:  GTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYF

Query:  ISIIDDFSRKVWIYPLKQKDKAFGKFLE
        ISIIDDFSRKVWIYPLKQKD+AFGKFLE
Subjt:  ISIIDDFSRKVWIYPLKQKDKAFGKFLE

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.7e-3524.06Show/hide
Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        M   +  +  F+G   +A+W+ +IRA+L +  V K++D   +P+ + +S K+  +  A  TI+ YLSD  L       T  ++ + L+++Y  KSL +++
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIK-YGRDSLTMSIVLDALKTRNLEIKKERKD--------
         ++++    K+     L  +   F +++ +L   G K+ + ++   LL +LP  Y  +  AI+    ++LT++ V + L  + ++IK +  D        
Subjt:  YIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIK-YGRDSLTMSIVLDALKTRNLEIKKERKD--------

Query:  --------------------GKRIFRSKSKGKSRKCFLCHKEGHFKKNC-----PLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHR
                             K+IF+  SK K  KC  C +EGH KK+C      LN   + +  +      +  A +               V  V++ 
Subjt:  --------------------GKRIFRSKSKGKSRKCFLCHKEGHFKKNC-----PLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHR

Query:  DIQD--AWIMDSGCTFHMTPHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRI-------LTNVRYVPKLKRNLISLGELDRSGCTIKSE
         + D   +++DSG + H+       T+  +V     +        V   G    AT  G+VR+       L +V +  +   NL+S+  L  +G +I+ +
Subjt:  DIQD--AWIMDSGCTFHMTPHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRI-------LTNVRYVPKLKRNLISLGELDRSGCTIKSE

Query:  NGVMKVTKGSL--VKLRGTLRHGLYVLEGTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGG---VKNVEL--PFCEHCIMGKSTRVKF
           + ++K  L  VK  G L +         ++  A   + K  +   LWH+R  H+S+  L  + ++ +      + N+EL    CE C+ GK  R+ F
Subjt:  NGVMKVTKGSL--VKLRGTLRHGLYVLEGTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGG---VKNVEL--PFCEHCIMGKSTRVKF

Query:  GKGKHTT--KGILDYIHSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKDKAFGKF
         + K  T  K  L  +HSD+ GP   V++    YF+  +D F+     Y +K K   F  F
Subjt:  GKGKHTT--KGILDYIHSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKDKAFGKF

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.8e-8333.15Show/hide
Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILD-EERLPDNITESEKRDMDEMAYWTILLYLSDEVL-RLVDEATTTGELWKKLESLYLTKSLPN
        M+  ++EV+KFNG   F+ W++++R +L+Q  + K+LD + + PD +   +  D+DE A   I L+LSD+V+  ++DE T  G +W +LESLY++K+L N
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILD-EERLPDNITESEKRDMDEMAYWTILLYLSDEVL-RLVDEATTTGELWKKLESLYLTKSLPN

Query:  KIYIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGKRIF--
        K+Y+K++ +   M +      +L+ F  ++  L N+G K+ +E++A++LLNSLP +Y  +   I +G+ ++ +  V  AL       KK    G+ +   
Subjt:  KIYIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGKRIF--

Query:  ----------------------RSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIM
                              +++SK + R C+ C++ GHFK++CP  +  +  TS     D  N+A +    D+        E  M      +  W++
Subjt:  ----------------------RSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIM

Query:  DSGCTFHMTPHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGT
        D+  + H TP RD    +   D G V +G+     + G G + I T+ G   +L +VR+VP L+ NLIS   LDR G      N   ++TKGSLV  +G 
Subjt:  DSGCTFHMTPHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGT

Query:  LRHGLYVLEGTTVSDSAAIASGKVT----DMSM-LWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLW
         R       GT    +A I  G++     ++S+ LWHKR+ H+SE+GLQ L+++ L+   K   +  C++C+ GK  RV F         ILD ++SD+ 
Subjt:  LRHGLYVLEGTTVSDSAAIASGKVT----DMSM-LWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLW

Query:  GPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKDKAFGKF
        GP +  SMGG++YF++ IDD SRK+W+Y LK KD+ F  F
Subjt:  GPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKDKAFGKF

P93293 Uncharacterized mitochondrial protein AtMg003001.1e-2347.32Show/hide
Query:  GVMKVTKGSLVKLRGTLRHGLYVLEGTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTK
        GV+KV KG    L+G     LY+L+G+  +  + +A     D + LWH RLAH+S+RG++ L ++G L   K   L FCE CI GK+ RV F  G+HTTK
Subjt:  GVMKVTKGSLVKLRGTLRHGLYVLEGTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTK

Query:  GILDYIHSDLWG
          LDY+HSDLWG
Subjt:  GILDYIHSDLWG

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.4e-2622.68Show/hide
Query:  DFALWRKKIRAILVQHKVAKILD-EERLPD-----------NITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIK
        ++ +W +++ A+   +++A  LD    +P            N   +  +  D++ Y  +L  +S  V   V  ATT  ++W+ L  +Y   S  +   ++
Subjt:  DFALWRKKIRAILVQHKVAKILD-EERLPD-----------NITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIK

Query:  EKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREV--KAAIKYGRDSLT---------------------MSIVLDALKT
         +   +    +K +++ +         L  +G+ M  + Q   +L +LPE Y+ V  + A K    +LT                     + I  +A+  
Subjt:  EKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREV--KAAIKYGRDSLT---------------------MSIVLDALKT

Query:  RNLEIKKERKDGKRIFR------------------------SKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYE
        RN        +G R  R                        ++SK    KC +C  +GH  K C             +    + S+  +    S  T ++
Subjt:  RNLEIKKERKDGKRIFR------------------------SKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYE

Query:  SAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGG-KVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGEL-DRSGCTI
            L +      + W++DSG T H+T   + L+  Q   GG  V++ D  T  +  TGS  ++T    +  L N+ YVP + +NLIS+  L + +G ++
Subjt:  SAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGG-KVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGEL-DRSGCTI

Query:  K--SENGVMKVTKGSLVKLRGTLRHGLYVLEGTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPF--CEHCIMGKSTRVKF
        +    +  +K     +  L+G  +  LY     +    +  AS         WH RL H +   L ++     L  V N    F  C  C++ KS +V F
Subjt:  K--SENGVMKVTKGSLVKLRGTLRHGLYVLEGTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPF--CEHCIMGKSTRVKF

Query:  GKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKDKAFGKFL
         +    +   L+YI+SD+W  +  +S    RY++  +D F+R  W+YPLKQK +    F+
Subjt:  GKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKDKAFGKFL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.2e-3025.28Show/hide
Query:  DFALWRKKIRAILVQHKVAKILD-----------EERLPD-NITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIK
        ++ +W +++ A+   +++A  LD            + +P  N   +  R  D++ Y  IL  +S  V   V  ATT  ++W+ L  +Y   S  +   ++
Subjt:  DFALWRKKIRAILVQHKVAKILD-----------EERLPD-NITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIK

Query:  -------EKFFGYKMDQSKILE---ENLDEFQKIVVD----------LNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNL
                   G  MD  + +E   ENL +  K V+D          L  I E++ +    ++ LNS       + A +   R++ T     +    RN 
Subjt:  -------EKFFGYKMDQSKILE---ENLDEFQKIVVD----------LNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNL

Query:  EIKKERKDGKRIFRSKSKGKSR-------KCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDS
             R +  +   S S+  +R       +C +C  +GH  K CP     +++T++   T  +             T ++    L V+     + W++DS
Subjt:  EIKKERKDGKRIFRSKSKGKSR-------KCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDS

Query:  GCTFHMTPHRDFLTNFQKVDGG-KVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGEL---DRSGCTIKSENGVMKVTKGSLVKLR
        G T H+T   + L+  Q   GG  V++ D  T  +  TGS  + T    +  L  V YVP + +NLIS+  L   +R        +  +K     +  L+
Subjt:  GCTFHMTPHRDFLTNFQKVDGG-KVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGEL---DRSGCTIKSENGVMKVTKGSLVKLR

Query:  GTLRHGLY---VLEGTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQA-LSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDL
        G  +  LY   +     VS  A+  S K T  S  WH RL H S   L + +S   L     + +L  C  C + KS +V F     T+   L+YI+SD+
Subjt:  GTLRHGLY---VLEGTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQA-LSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDL

Query:  WGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKDKAFGKFL
        W  +  +S+   RY++  +D F+R  W+YPLKQK +    F+
Subjt:  WGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKDKAFGKFL

Arabidopsis top hitse value%identityAlignment
AT3G21000.1 Gag-Pol-related retrotransposon family protein7.4e-0726.35Show/hide
Query:  KGKSRK-CFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGGK
        K KS K C LC+K  H +++C      +    E  +   Y                E+   L     D  D WI+      +MTP+  + T   +     
Subjt:  KGKSRK-CFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGGK

Query:  VLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGEL
        V   D     V+G G V+I   +G  + + NV +VP L RN++S G++
Subjt:  VLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGEL

ATMG00300.1 Gag-Pol-related retrotransposon family protein7.9e-2547.32Show/hide
Query:  GVMKVTKGSLVKLRGTLRHGLYVLEGTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTK
        GV+KV KG    L+G     LY+L+G+  +  + +A     D + LWH RLAH+S+RG++ L ++G L   K   L FCE CI GK+ RV F  G+HTTK
Subjt:  GVMKVTKGSLVKLRGTLRHGLYVLEGTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTK

Query:  GILDYIHSDLWG
          LDY+HSDLWG
Subjt:  GILDYIHSDLWG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGACACGATTTGAAGTGTCTAAGTTTAATGGACATGGAGATTTCGCTCTTTGGAGAAAAAAGATTAGAGCTATTTTGGTTCAACATAAAGTAGCAAAGATCTT
AGATGAAGAGAGACTTCCAGATAATATTACAGAAAGTGAAAAAAGAGATATGGATGAAATGGCCTATTGGACTATTCTTCTGTATCTGTCAGATGAAGTTCTTAGGCTAG
TGGATGAGGCTACTACTACAGGGGAGTTGTGGAAAAAGCTAGAGAGCCTTTATTTGACAAAGTCATTGCCAAATAAAATATATATAAAGGAGAAGTTCTTTGGATATAAA
ATGGACCAAAGTAAAATTTTAGAAGAGAATCTGGATGAATTTCAGAAGATTGTAGTTGATCTCAATAACATCGGTGAGAAGATGTCGGATGAGAATCAAGCAGTGATTCT
TTTAAATTCACTACCAGAAACATATCGAGAGGTTAAGGCTGCTATTAAATATGGTCGGGACTCATTGACCATGAGTATAGTGTTGGATGCCTTGAAAACTAGAAATCTCG
AGATCAAGAAAGAACGCAAAGATGGCAAGAGGATTTTCAGGTCGAAATCCAAGGGGAAATCTAGAAAGTGTTTCCTTTGTCATAAAGAAGGACACTTTAAGAAAAATTGC
CCTTTGAATAAGAGCAGAGAAGCATCAACCAGTGAAGCGAATGTTACTGATGGGTATAATTCAGCAGAGATCACTGATGGGTGTGATTCAGCAGAGACTGGGTATGAGTC
TGCAGAGGTCTTGATGGTGTCTCACAGAGATATACAGGATGCTTGGATCATGGATTCAGGGTGTACTTTTCATATGACCCCTCATCGGGATTTTCTGACAAACTTTCAGA
AAGTTGATGGGGGAAAGGTCTTATTGGGTGACAATGGTACATGCGATGTAAAAGGAACTGGTTCAGTGCAAATTGCAACACATGATGGGATGGTAAGAATACTTACCAAT
GTGCGGTATGTTCCAAAACTTAAACGTAATCTAATATCTCTTGGGGAATTAGATAGATCAGGTTGTACCATAAAATCTGAAAATGGAGTTATGAAAGTTACCAAAGGTTC
TCTAGTTAAACTGAGGGGAACTTTAAGACATGGTCTATATGTGTTGGAAGGTACCACAGTTTCAGATAGTGCTGCTATTGCGTCTGGTAAAGTTACAGATATGTCTATGT
TATGGCATAAAAGGCTAGCTCATGTGAGTGAAAGAGGCTTACAAGCTCTATCCCAACAAGGTTTGCTAGGAGGAGTTAAGAATGTTGAACTCCCATTTTGTGAACATTGT
ATAATGGGAAAGTCTACCAGAGTAAAGTTTGGGAAAGGGAAGCACACGACCAAAGGTATTTTGGATTATATTCACTCAGATTTGTGGGGTCCTACGAAAGAGGTCTCTAT
GGGAGGTTCGAGATACTTTATCTCTATCATTGATGATTTCTCAAGAAAAGTATGGATTTATCCATTGAAACAAAAGGATAAAGCTTTTGGAAAATTTCTTGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCGACACGATTTGAAGTGTCTAAGTTTAATGGACATGGAGATTTCGCTCTTTGGAGAAAAAAGATTAGAGCTATTTTGGTTCAACATAAAGTAGCAAAGATCTT
AGATGAAGAGAGACTTCCAGATAATATTACAGAAAGTGAAAAAAGAGATATGGATGAAATGGCCTATTGGACTATTCTTCTGTATCTGTCAGATGAAGTTCTTAGGCTAG
TGGATGAGGCTACTACTACAGGGGAGTTGTGGAAAAAGCTAGAGAGCCTTTATTTGACAAAGTCATTGCCAAATAAAATATATATAAAGGAGAAGTTCTTTGGATATAAA
ATGGACCAAAGTAAAATTTTAGAAGAGAATCTGGATGAATTTCAGAAGATTGTAGTTGATCTCAATAACATCGGTGAGAAGATGTCGGATGAGAATCAAGCAGTGATTCT
TTTAAATTCACTACCAGAAACATATCGAGAGGTTAAGGCTGCTATTAAATATGGTCGGGACTCATTGACCATGAGTATAGTGTTGGATGCCTTGAAAACTAGAAATCTCG
AGATCAAGAAAGAACGCAAAGATGGCAAGAGGATTTTCAGGTCGAAATCCAAGGGGAAATCTAGAAAGTGTTTCCTTTGTCATAAAGAAGGACACTTTAAGAAAAATTGC
CCTTTGAATAAGAGCAGAGAAGCATCAACCAGTGAAGCGAATGTTACTGATGGGTATAATTCAGCAGAGATCACTGATGGGTGTGATTCAGCAGAGACTGGGTATGAGTC
TGCAGAGGTCTTGATGGTGTCTCACAGAGATATACAGGATGCTTGGATCATGGATTCAGGGTGTACTTTTCATATGACCCCTCATCGGGATTTTCTGACAAACTTTCAGA
AAGTTGATGGGGGAAAGGTCTTATTGGGTGACAATGGTACATGCGATGTAAAAGGAACTGGTTCAGTGCAAATTGCAACACATGATGGGATGGTAAGAATACTTACCAAT
GTGCGGTATGTTCCAAAACTTAAACGTAATCTAATATCTCTTGGGGAATTAGATAGATCAGGTTGTACCATAAAATCTGAAAATGGAGTTATGAAAGTTACCAAAGGTTC
TCTAGTTAAACTGAGGGGAACTTTAAGACATGGTCTATATGTGTTGGAAGGTACCACAGTTTCAGATAGTGCTGCTATTGCGTCTGGTAAAGTTACAGATATGTCTATGT
TATGGCATAAAAGGCTAGCTCATGTGAGTGAAAGAGGCTTACAAGCTCTATCCCAACAAGGTTTGCTAGGAGGAGTTAAGAATGTTGAACTCCCATTTTGTGAACATTGT
ATAATGGGAAAGTCTACCAGAGTAAAGTTTGGGAAAGGGAAGCACACGACCAAAGGTATTTTGGATTATATTCACTCAGATTTGTGGGGTCCTACGAAAGAGGTCTCTAT
GGGAGGTTCGAGATACTTTATCTCTATCATTGATGATTTCTCAAGAAAAGTATGGATTTATCCATTGAAACAAAAGGATAAAGCTTTTGGAAAATTTCTTGAATAG
Protein sequenceShow/hide protein sequence
MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYK
MDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGKRIFRSKSKGKSRKCFLCHKEGHFKKNC
PLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTN
VRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLEGTTVSDSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHC
IMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKDKAFGKFLE