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Pay0018444 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0018444
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGag/pol protein
Genome locationchr11:25065521..25066090
RNA-Seq ExpressionPay0018444
SyntenyPay0018444
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041460.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-8286.24Show/hide
Query:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG
        MNS IVQLL+SEK NGDNYAAWKSNLNT+LVVDDLRFVLTEECP TPTSNANR            NEKARVYILASMSDVLA+K+ESLATAKEIM+SLKG
Subjt:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG

Query:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL
        MFGQPKWSLRHEAIKYIYTKRMKEGTS+REHVLDMM+HFNI EVNGGAID+ANQVS ILESLPKSFIPFQ NASLNKIEFNLTTLLNEL
Subjt:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL

KAA0048103.1 gag/pol protein [Cucumis melo var. makuwa]3.3e-8185.19Show/hide
Query:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG
        MNSLIVQLLASEK N DNY  WKSNLNT+LVVDDLRFVLTEECP TP SNANR            NEKARVYILASMSDVLA+K+ESLATAKEIMDSLKG
Subjt:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG

Query:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL
        MFGQPKWSLRH+AIKYIYTKRMKEGTS+REHVL MM+HFNIAEVNGGAID+ANQVSFILESLPKSFIPFQ N SLNKIEFNLTTLLNEL
Subjt:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL

KAA0055182.1 gag/pol protein [Cucumis melo var. makuwa]4.4e-8185.19Show/hide
Query:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG
        MNS IVQLLASEK NGDNYAAWKSNLNT+LVVDDLRF+LT+ECP TP SNANRA           NEK  VYILASMSDVLA+KYESLATAKEI+DSLKG
Subjt:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG

Query:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL
        MFGQP+WSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAID+ANQV+FILESL KSFIPFQ NASLNKIEFNL TLLNEL
Subjt:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL

KAA0056341.1 gag/pol protein [Cucumis melo var. makuwa]4.4e-8185.19Show/hide
Query:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG
        +NSLIVQLLA EK NGDNYAAWKSNLNT+LVVDDLRF+LTEECP  P SN N+A           NEKARVYILASMSDVLA+K+ESLATAKEIMDSLKG
Subjt:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG

Query:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL
        MF QP+W LRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAID+ANQVSFILESLPKSFIPFQ NASLNKIEFNLTTLLNEL
Subjt:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL

TYK03174.1 gag/pol protein [Cucumis melo var. makuwa]4.4e-8185.19Show/hide
Query:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG
        +NSLIVQLLA EK NGDNYAAWKSNLNT+LVVDDLRF+LTEECP  P SN N+A           NEKARVYILASMSDVLA+K+ESLATAKEIMDSLKG
Subjt:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG

Query:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL
        MF QP+W LRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAID+ANQVSFILESLPKSFIPFQ NASLNKIEFNLTTLLNEL
Subjt:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL

TrEMBL top hitse value%identityAlignment
A0A5A7TWX1 Gag/pol protein1.6e-8185.19Show/hide
Query:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG
        MNSLIVQLLASEK N DNY  WKSNLNT+LVVDDLRFVLTEECP TP SNANR            NEKARVYILASMSDVLA+K+ESLATAKEIMDSLKG
Subjt:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG

Query:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL
        MFGQPKWSLRH+AIKYIYTKRMKEGTS+REHVL MM+HFNIAEVNGGAID+ANQVSFILESLPKSFIPFQ N SLNKIEFNLTTLLNEL
Subjt:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL

A0A5A7UH70 Gag/pol protein2.1e-8185.19Show/hide
Query:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG
        MNS IVQLLASEK NGDNYAAWKSNLNT+LVVDDLRF+LT+ECP TP SNANRA           NEK  VYILASMSDVLA+KYESLATAKEI+DSLKG
Subjt:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG

Query:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL
        MFGQP+WSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAID+ANQV+FILESL KSFIPFQ NASLNKIEFNL TLLNEL
Subjt:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL

A0A5A7US12 Gag/pol protein2.1e-8185.19Show/hide
Query:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG
        +NSLIVQLLA EK NGDNYAAWKSNLNT+LVVDDLRF+LTEECP  P SN N+A           NEKARVYILASMSDVLA+K+ESLATAKEIMDSLKG
Subjt:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG

Query:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL
        MF QP+W LRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAID+ANQVSFILESLPKSFIPFQ NASLNKIEFNLTTLLNEL
Subjt:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL

A0A5D3BVG4 Gag/pol protein2.1e-8185.19Show/hide
Query:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG
        +NSLIVQLLA EK NGDNYAAWKSNLNT+LVVDDLRF+LTEECP  P SN N+A           NEKARVYILASMSDVLA+K+ESLATAKEIMDSLKG
Subjt:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG

Query:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL
        MF QP+W LRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAID+ANQVSFILESLPKSFIPFQ NASLNKIEFNLTTLLNEL
Subjt:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL

A0A5D3DL59 Gag/pol protein5.0e-8386.24Show/hide
Query:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG
        MNS IVQLL+SEK NGDNYAAWKSNLNT+LVVDDLRFVLTEECP TPTSNANR            NEKARVYILASMSDVLA+K+ESLATAKEIM+SLKG
Subjt:  MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAK----------NEKARVYILASMSDVLAEKYESLATAKEIMDSLKG

Query:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL
        MFGQPKWSLRHEAIKYIYTKRMKEGTS+REHVLDMM+HFNI EVNGGAID+ANQVS ILESLPKSFIPFQ NASLNKIEFNLTTLLNEL
Subjt:  MFGQPKWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAGCTTGATAGTTCAATTGTTAGCTTCTGAAAAATTTAACGGTGATAACTATGCGGCGTGGAAATCAAATCTTAACACAATGCTAGTTGTTGATGATTTAAGATT
TGTCTTAACTGAGGAATGTCCTCTAACCCCAACCTCAAATGCAAACCGAGCTAAAAATGAGAAAGCCCGTGTCTACATTCTTGCTAGCATGTCAGATGTTTTAGCAGAGA
AGTATGAATCCTTAGCCACGGCTAAAGAGATTATGGATTCTTTGAAAGGAATGTTTGGGCAGCCAAAGTGGTCCCTAAGACATGAGGCAATCAAATACATTTACACTAAG
CGTATGAAGGAGGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGATGCACTTCAATATTGCTGAAGTAAATGGTGGTGCCATCGATAAGGCTAATCAAGTTAGTTT
CATCTTAGAGTCTCTTCCGAAGAGCTTCATACCATTCCAAAAAAATGCGTCCCTGAATAAGATAGAATTTAACTTGACAACCCTTTTGAATGAGCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATAGCTTGATAGTTCAATTGTTAGCTTCTGAAAAATTTAACGGTGATAACTATGCGGCGTGGAAATCAAATCTTAACACAATGCTAGTTGTTGATGATTTAAGATT
TGTCTTAACTGAGGAATGTCCTCTAACCCCAACCTCAAATGCAAACCGAGCTAAAAATGAGAAAGCCCGTGTCTACATTCTTGCTAGCATGTCAGATGTTTTAGCAGAGA
AGTATGAATCCTTAGCCACGGCTAAAGAGATTATGGATTCTTTGAAAGGAATGTTTGGGCAGCCAAAGTGGTCCCTAAGACATGAGGCAATCAAATACATTTACACTAAG
CGTATGAAGGAGGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGATGCACTTCAATATTGCTGAAGTAAATGGTGGTGCCATCGATAAGGCTAATCAAGTTAGTTT
CATCTTAGAGTCTCTTCCGAAGAGCTTCATACCATTCCAAAAAAATGCGTCCCTGAATAAGATAGAATTTAACTTGACAACCCTTTTGAATGAGCTCTAA
Protein sequenceShow/hide protein sequence
MNSLIVQLLASEKFNGDNYAAWKSNLNTMLVVDDLRFVLTEECPLTPTSNANRAKNEKARVYILASMSDVLAEKYESLATAKEIMDSLKGMFGQPKWSLRHEAIKYIYTK
RMKEGTSVREHVLDMMMHFNIAEVNGGAIDKANQVSFILESLPKSFIPFQKNASLNKIEFNLTTLLNEL