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Pay0018543 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0018543
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGeranylgeranyl transferase type-2 subunit beta
Genome locationchr01:2860938..2863051
RNA-Seq ExpressionPay0018543
SyntenyPay0018543
Gene Ontology termsGO:0018344 - protein geranylgeranylation (biological process)
GO:0005968 - Rab-protein geranylgeranyltransferase complex (cellular component)
GO:0004663 - Rab geranylgeranyltransferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001330 - PFTB repeat
IPR008930 - Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
IPR045089 - Prenyltransferase subunit beta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575580.1 Geranylgeranyl transferase type-2 subunit beta 1, partial [Cucurbita argyrosperma subsp. sororia]2.2e-3386.21Show/hide
Query:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        +SGGF+GN GHD HILYTLSAVQVLALFDKL+VLDVDKVTDY+VGLQNEDGSFS D+W EVDSRFSYIAI  LSLLHQL+KINVEKA
Subjt:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

XP_022135990.1 geranylgeranyl transferase type-2 subunit beta 1-like [Momordica charantia]2.2e-3387.36Show/hide
Query:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        +SGGFSGN GHD HILYTLSAVQVLALFD+L+VLDVDKVT+YI GLQNEDGSFS D+W EVDSRFSYIAIS LSLLHQLEKINVEKA
Subjt:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

XP_022954124.1 geranylgeranyl transferase type-2 subunit beta 1-like [Cucurbita moschata]2.2e-3386.21Show/hide
Query:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        +SGGF+GN GHD HILYTLSAVQVLALFD L+VLDVDKVTDY+VGLQNEDGSFS D+W EVDSRFSYIAIS LSLLHQL+KINVEKA
Subjt:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

XP_038887307.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida]1.7e-3387.36Show/hide
Query:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        +SGGFSGN GHD HILYTLSAVQVLALFDKL+V+DVDKVTDYIVGLQNEDGSFS D+W EVDSRFSYIA+S LSLL+QLEKINVEKA
Subjt:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

XP_038887310.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hispida]1.7e-3387.36Show/hide
Query:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        +SGGFSGN GHD HILYTLSAVQVLALFDKL+V+DVDKVTDYIVGLQNEDGSFS D+W EVDSRFSYIA+S LSLL+QLEKINVEKA
Subjt:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

TrEMBL top hitse value%identityAlignment
A0A0A0K723 Geranylgeranyl transferase type-2 subunit beta1.8e-3386.21Show/hide
Query:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        +SGGFSGN GHD HILYTLSAVQVLALFDKL+VLDVDKVT+Y+VGLQNEDGSFS D+W EVDSRFSYIAI  LSLLHQL+KINVEKA
Subjt:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

A0A1S3CDW8 Geranylgeranyl transferase type-2 subunit beta4.1e-3385.06Show/hide
Query:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        +SGGF+GN GHD HILYTLSAVQVLALFDKL+VLDVDKVT+Y+VGLQNEDGSFS D+W EVDSRFSYIAI  LSLLHQL+KINVEKA
Subjt:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

A0A6J1C294 Geranylgeranyl transferase type-2 subunit beta1.1e-3387.36Show/hide
Query:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        +SGGFSGN GHD HILYTLSAVQVLALFD+L+VLDVDKVT+YI GLQNEDGSFS D+W EVDSRFSYIAIS LSLLHQLEKINVEKA
Subjt:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

A0A6J1GS02 Geranylgeranyl transferase type-2 subunit beta1.1e-3386.21Show/hide
Query:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        +SGGF+GN GHD HILYTLSAVQVLALFD L+VLDVDKVTDY+VGLQNEDGSFS D+W EVDSRFSYIAIS LSLLHQL+KINVEKA
Subjt:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

A0A6J1JME6 Geranylgeranyl transferase type-2 subunit beta1.1e-3386.21Show/hide
Query:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        +SGGF+GN GHD HILYTLSAVQVLALFDKL+VLDVDKVTDY+VGLQNEDGSFS D+W EVDSRFSYIAI  LSLLHQL+KINVEKA
Subjt:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

SwissProt top hitse value%identityAlignment
P53611 Geranylgeranyl transferase type-2 subunit beta1.0e-2559.77Show/hide
Query:  GGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE
        GG S + GHD H+LYTLSAVQ+L L+D +NV+DV+KV +Y+ GLQ EDGSF+ D+W E+D+RFS+ A++ L+LL +L+ INVEKA E
Subjt:  GGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE

P53612 Geranylgeranyl transferase type-2 subunit beta7.5e-2457.47Show/hide
Query:  GGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE
        GG S + GHD H+LYTLSAVQ+L L+D ++V++VDKV  Y+  LQ EDGSF+ D+W E+D+RFS+ A++ L+LL +L+ INVEKA E
Subjt:  GGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE

Q5E9B3 Geranylgeranyl transferase type-2 subunit beta6.8e-2557.47Show/hide
Query:  GGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE
        GG S + GHD H+LYTLSAVQ+L L+D +NV+D++KV +Y+  LQ EDGSF+ D+W E+D+RFS+ A++ L+LL +L+ INVEKA E
Subjt:  GGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE

Q84J75 Geranylgeranyl transferase type-2 subunit beta 11.1e-3072.41Show/hide
Query:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        +SGGF+GNTGHD HILYTLSAVQ+LALFDK+N+LD+ KV+ Y+  LQNEDGSFS D+W E+D+RFSYIAI  LS+L  L+KINVEKA
Subjt:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

Q9LHL5 Geranylgeranyl transferase type-2 subunit beta 22.0e-3274.16Show/hide
Query:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE
        +SGGF+GNTGHD H+LYTLSAVQ+LALFDKLN+LDV+KV++YI GLQNEDGSFS D+W EVD+RFSYIAI  LS+L  L+KINV+KA +
Subjt:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE

Arabidopsis top hitse value%identityAlignment
AT3G12070.1 RAB geranylgeranyl transferase beta subunit 21.4e-3374.16Show/hide
Query:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE
        +SGGF+GNTGHD H+LYTLSAVQ+LALFDKLN+LDV+KV++YI GLQNEDGSFS D+W EVD+RFSYIAI  LS+L  L+KINV+KA +
Subjt:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE

AT3G12070.2 RAB geranylgeranyl transferase beta subunit 21.4e-3374.16Show/hide
Query:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE
        +SGGF+GNTGHD H+LYTLSAVQ+LALFDKLN+LDV+KV++YI GLQNEDGSFS D+W EVD+RFSYIAI  LS+L  L+KINV+KA +
Subjt:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE

AT5G12210.1 RAB geranylgeranyl transferase beta subunit 17.7e-3272.41Show/hide
Query:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        +SGGF+GNTGHD HILYTLSAVQ+LALFDK+N+LD+ KV+ Y+  LQNEDGSFS D+W E+D+RFSYIAI  LS+L  L+KINVEKA
Subjt:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

AT5G12210.2 RAB geranylgeranyl transferase beta subunit 17.7e-3272.41Show/hide
Query:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        +SGGF+GNTGHD HILYTLSAVQ+LALFDK+N+LD+ KV+ Y+  LQNEDGSFS D+W E+D+RFSYIAI  LS+L  L+KINVEKA
Subjt:  KSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATCAGCATGAACGAGATCAATATTACATGTACGACTCTCCATGCTTCTTCAATTCTCTTCTCTAACCTAAATTTCCCTTTCATTTCTGGATCTACTACTACTAC
TACTACTACTTCTTCTTCTAGCTCATTCTCCCATTTTCAAGCCGGGTATTGTCCCTCTCGACTGGAGCTCACAATCAAATCAGGTGGTTTTTCTGGCAACACTGGTCATG
ATCAGCACATACTTTACACCCTTAGTGCCGTACAAGTCTTGGCCCTCTTTGACAAGTTGAATGTTTTAGATGTTGATAAGGTGACAGATTATATTGTTGGTTTGCAAAAT
GAAGATGGTTCCTTCTCAAGAGACGTTTGGGATGAAGTAGATTCAAGGTTTTCTTATATTGCAATATCTCATCTATCGTTATTACATCAACTGGAGAAGATCAATGTTGA
GAAGGCTTTCGAACTACATTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGATCAGCATGAACGAGATCAATATTACATGTACGACTCTCCATGCTTCTTCAATTCTCTTCTCTAACCTAAATTTCCCTTTCATTTCTGGATCTACTACTACTAC
TACTACTACTTCTTCTTCTAGCTCATTCTCCCATTTTCAAGCCGGGTATTGTCCCTCTCGACTGGAGCTCACAATCAAATCAGGTGGTTTTTCTGGCAACACTGGTCATG
ATCAGCACATACTTTACACCCTTAGTGCCGTACAAGTCTTGGCCCTCTTTGACAAGTTGAATGTTTTAGATGTTGATAAGGTGACAGATTATATTGTTGGTTTGCAAAAT
GAAGATGGTTCCTTCTCAAGAGACGTTTGGGATGAAGTAGATTCAAGGTTTTCTTATATTGCAATATCTCATCTATCGTTATTACATCAACTGGAGAAGATCAATGTTGA
GAAGGCTTTCGAACTACATTCTTAG
Protein sequenceShow/hide protein sequence
MVISMNEINITCTTLHASSILFSNLNFPFISGSTTTTTTTSSSSSFSHFQAGYCPSRLELTIKSGGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQN
EDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFELHS