CuGenDBv2

Gene ID	Pay0018662
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Integrase catalytic domain-containing protein
Genome location	chr11:9733644..9733997
RNA-Seq Expression	Pay0018662
Synteny	Pay0018662
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0041944.1 uncharacterized protein E6C27_scaffold67G003660 [Cucumis melo var. makuwa]

3.9e-46

86.32

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Query:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL
        MIDKLCEKFKFKQYKSS+YNTA N LAEAFNKTLCNLLKKIV KSK+D +ERIGE LWAYRTTH T TGVTPYSLVYGVEVVLPLEREI SLRMA QE L
Subjt:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL

Query:  TTEDNVKLCLQELEVRD
        TTEDNVKL LQELE  D
Subjt:  TTEDNVKLCLQELEVRD

KAA0043404.1 uncharacterized protein E6C27_scaffold1639G00030 [Cucumis melo var. makuwa]

5.8e-58

100

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Query:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL
        MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL
Subjt:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL

Query:  TTEDNVKLCLQELEVRD
        TTEDNVKLCLQELEVRD
Subjt:  TTEDNVKLCLQELEVRD

TYK27554.1 uncharacterized protein E5676_scaffold22G00230 [Cucumis melo var. makuwa]

3.0e-46

86.32

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Query:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL
        MIDKLC KFKFKQYKSS+YN AANGLAEAFNKTLCNLLKKIV KSK+D +ERIGE LWAYRTTH T TGVTPYSLVYGVEVVLPLEREI SLRMA QE L
Subjt:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL

Query:  TTEDNVKLCLQELEVRD
        TTEDNVKL LQELE  D
Subjt:  TTEDNVKLCLQELEVRD

XP_008455971.1 PREDICTED: uncharacterized protein LOC103496034 [Cucumis melo]

1.3e-54

96.58

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Query:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL
        MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIV KSKKDLEERIGE LWAYRTTHCT TGVTPYSLVYGVEVVL LEREISSLRMAEQERL
Subjt:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL

Query:  TTEDNVKLCLQELEVRD
        TTEDNVKLCLQELEVRD
Subjt:  TTEDNVKLCLQELEVRD

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]

6.6e-46

84.62

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Query:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL
        M+DKLCEKFKFKQYKSS+YN AANGLAEAFNKTLCNLLKKIV KSK+D +E+IGE LWAYRTTH T TGVTPYSLVYGVE VLPLEREI SLRMA QE L
Subjt:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL

Query:  TTEDNVKLCLQELEVRD
        TTEDNVKL LQELE  D
Subjt:  TTEDNVKLCLQELEVRD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C2U7 uncharacterized protein LOC103496034

6.5e-55

96.58

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Query:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL
        MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIV KSKKDLEERIGE LWAYRTTHCT TGVTPYSLVYGVEVVL LEREISSLRMAEQERL
Subjt:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL

Query:  TTEDNVKLCLQELEVRD
        TTEDNVKLCLQELEVRD
Subjt:  TTEDNVKLCLQELEVRD

A0A5A7TJB0 Uncharacterized protein

2.8e-58

100

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Query:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL
        MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL
Subjt:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL

Query:  TTEDNVKLCLQELEVRD
        TTEDNVKLCLQELEVRD
Subjt:  TTEDNVKLCLQELEVRD

A0A5D3BGZ8 Uncharacterized protein

6.5e-55

96.58

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Query:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL
        MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIV KSKKDLEERIGE LWAYRTTHCT TGVTPYSLVYGVEVVL LEREISSLRMAEQERL
Subjt:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL

Query:  TTEDNVKLCLQELEVRD
        TTEDNVKLCLQELEVRD
Subjt:  TTEDNVKLCLQELEVRD

A0A5D3D3R6 Integrase catalytic domain-containing protein

1.9e-46

86.32

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Query:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL
        MIDKLCEKFKFKQYKSS+YNTA N LAEAFNKTLCNLLKKIV KSK+D +ERIGE LWAYRTTH T TGVTPYSLVYGVEVVLPLEREI SLRMA QE L
Subjt:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL

Query:  TTEDNVKLCLQELEVRD
        TTEDNVKL LQELE  D
Subjt:  TTEDNVKLCLQELEVRD

A0A5D3DVM7 Ribonuclease H

1.4e-46

86.32

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Query:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL
        MIDKLC KFKFKQYKSS+YN AANGLAEAFNKTLCNLLKKIV KSK+D +ERIGE LWAYRTTH T TGVTPYSLVYGVEVVLPLEREI SLRMA QE L
Subjt:  MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERL

Query:  TTEDNVKLCLQELEVRD
        TTEDNVKL LQELE  D
Subjt:  TTEDNVKLCLQELEVRD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATAGATAAATTATGTGAAAAATTCAAGTTCAAGCAATACAAGTCATCTCTGTATAACACAGCTGCGAATGGCCTAGCAGAAGCATTCAATAAAACGTTATGCAATCT
TCTGAAGAAAATTGTCTTCAAGTCGAAAAAGGATTTGGAAGAAAGAATCGGTGAAGGATTGTGGGCTTATCGAACCACTCATTGCACTCTTACAGGGGTTACACCATATT
CGCTCGTTTATGGTGTAGAGGTTGTCCTTCCCCTTGAAAGAGAAATCTCATCATTAAGAATGGCAGAACAAGAGAGGTTGACTACCGAAGACAATGTCAAGTTATGTCTT
CAAGAGTTAGAAGTACGCGATTAA

mRNA sequence

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Protein sequence

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MIDKLCEKFKFKQYKSSLYNTAANGLAEAFNKTLCNLLKKIVFKSKKDLEERIGEGLWAYRTTHCTLTGVTPYSLVYGVEVVLPLEREISSLRMAEQERLTTEDNVKLCL
QELEVRD

Pay0018662 (gene) of Melon (Payzawat) v1 genome