CuGenDBv2

Gene ID	Pay0018671
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrotransposon protein
Genome location	chr08:23050627..23054475
RNA-Seq Expression	Pay0018671
Synteny	Pay0018671
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR027806 - Harbinger transposase-derived nuclease domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0060101.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]

6.4e-68

100

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Query:  MLPLAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILTCLLHNLIDREMTNFNIEDDIDEVDSTHATTVGDDIHY
        MLPLAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILTCLLHNLIDREMTNFNIEDDIDEVDSTHATTVGDDIHY
Subjt:  MLPLAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILTCLLHNLIDREMTNFNIEDDIDEVDSTHATTVGDDIHY

Query:  IETSNEWTPWRDELVEEMFSDWELRNQ
        IETSNEWTPWRDELVEEMFSDWELRNQ
Subjt:  IETSNEWTPWRDELVEEMFSDWELRNQ

KAA0066569.1 retrotransposon protein [Cucumis melo var. makuwa]

2.2e-52

83.06

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Query:  LAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILT-CLLHNLIDREMTNFNIEDDIDEVDSTHATTVGDDIHYIE
        L EWRGA+NAPST KEFFNMKHSS RN+I+RAF VLK RW IL+EKSYYPVKVQCRTILT CLLHNLI+REMTNF+IED+IDEVDSTHATT  DDIHYIE
Subjt:  LAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILT-CLLHNLIDREMTNFNIEDDIDEVDSTHATTVGDDIHYIE

Query:  TSNEWTPWRDELVEEMFSDWELRN
        TSNEWT WRD+L EEMF+ WELRN
Subjt:  TSNEWTPWRDELVEEMFSDWELRN

KAA0068124.1 retrotransposon protein [Cucumis melo var. makuwa]

4.9e-52

81.6

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Query:  LAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILT-CLLHNLIDREMTNFNIEDDIDEVDSTHATTVGDDIHYIE
        L EWRG +NAPST KEFFNMKHSSARNVI+RAFGVLK RW IL+ KSYYPV+VQCRTIL  CLLHNLI+REMTNF+IED+IDEVDSTHATT  DDIHYIE
Subjt:  LAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILT-CLLHNLIDREMTNFNIEDDIDEVDSTHATTVGDDIHYIE

Query:  TSNEWTPWRDELVEEMFSDWELRNQ
        TSNEW+ WRD+L EEMF++WELRNQ
Subjt:  TSNEWTPWRDELVEEMFSDWELRNQ

TYK15303.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]

1.7e-52

83.06

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Query:  LAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILT-CLLHNLIDREMTNFNIEDDIDEVDSTHATTVGDDIHYIE
        L EWRGA+NAPST KEFFNMKHSS  N+I+RAFGVLK RW IL+EKSYYPVKVQCRTILT CLLHNLI+REMTNF+IED+IDEVDSTHATT  DDIHYIE
Subjt:  LAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILT-CLLHNLIDREMTNFNIEDDIDEVDSTHATTVGDDIHYIE

Query:  TSNEWTPWRDELVEEMFSDWELRN
        TSNEWT WRD+L EEMF+ WELRN
Subjt:  TSNEWTPWRDELVEEMFSDWELRN

XP_008442271.1 PREDICTED: uncharacterized protein LOC103486178 [Cucumis melo]

1.0e-86

100

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Query:  MVKESQVEAWRSMAGVLGLHRRGFSDTLQRPMLPLAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILTCLLHNL
        MVKESQVEAWRSMAGVLGLHRRGFSDTLQRPMLPLAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILTCLLHNL
Subjt:  MVKESQVEAWRSMAGVLGLHRRGFSDTLQRPMLPLAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILTCLLHNL

Query:  IDREMTNFNIEDDIDEVDSTHATTVGDDIHYIETSNEWTPWRDELVEEMFSDWELRNQ
        IDREMTNFNIEDDIDEVDSTHATTVGDDIHYIETSNEWTPWRDELVEEMFSDWELRNQ
Subjt:  IDREMTNFNIEDDIDEVDSTHATTVGDDIHYIETSNEWTPWRDELVEEMFSDWELRNQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B5B3 uncharacterized protein LOC103486178

5.1e-87

100

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Query:  MVKESQVEAWRSMAGVLGLHRRGFSDTLQRPMLPLAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILTCLLHNL
        MVKESQVEAWRSMAGVLGLHRRGFSDTLQRPMLPLAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILTCLLHNL
Subjt:  MVKESQVEAWRSMAGVLGLHRRGFSDTLQRPMLPLAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILTCLLHNL

Query:  IDREMTNFNIEDDIDEVDSTHATTVGDDIHYIETSNEWTPWRDELVEEMFSDWELRNQ
        IDREMTNFNIEDDIDEVDSTHATTVGDDIHYIETSNEWTPWRDELVEEMFSDWELRNQ
Subjt:  IDREMTNFNIEDDIDEVDSTHATTVGDDIHYIETSNEWTPWRDELVEEMFSDWELRNQ

A0A5A7UGH9 Retrotransposon protein

2.4e-52

81.6

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Query:  LAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILT-CLLHNLIDREMTNFNIEDDIDEVDSTHATTVGDDIHYIE
        L EWRG +NAPST KEFFNMKHSSARNVI+RAFGVLK RW IL+ KSYYPV+VQCRTIL  CLLHNLI+REMTNF+IED+IDEVDSTHATT  DDIHYIE
Subjt:  LAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILT-CLLHNLIDREMTNFNIEDDIDEVDSTHATTVGDDIHYIE

Query:  TSNEWTPWRDELVEEMFSDWELRNQ
        TSNEW+ WRD+L EEMF++WELRNQ
Subjt:  TSNEWTPWRDELVEEMFSDWELRNQ

A0A5A7VMV2 Retrotransposon protein

1.1e-52

83.06

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Query:  LAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILT-CLLHNLIDREMTNFNIEDDIDEVDSTHATTVGDDIHYIE
        L EWRGA+NAPST KEFFNMKHSS RN+I+RAF VLK RW IL+EKSYYPVKVQCRTILT CLLHNLI+REMTNF+IED+IDEVDSTHATT  DDIHYIE
Subjt:  LAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILT-CLLHNLIDREMTNFNIEDDIDEVDSTHATTVGDDIHYIE

Query:  TSNEWTPWRDELVEEMFSDWELRN
        TSNEWT WRD+L EEMF+ WELRN
Subjt:  TSNEWTPWRDELVEEMFSDWELRN

A0A5D3CA52 Putative nuclease HARBI1

3.1e-68

100

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Query:  MLPLAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILTCLLHNLIDREMTNFNIEDDIDEVDSTHATTVGDDIHY
        MLPLAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILTCLLHNLIDREMTNFNIEDDIDEVDSTHATTVGDDIHY
Subjt:  MLPLAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILTCLLHNLIDREMTNFNIEDDIDEVDSTHATTVGDDIHY

Query:  IETSNEWTPWRDELVEEMFSDWELRNQ
        IETSNEWTPWRDELVEEMFSDWELRNQ
Subjt:  IETSNEWTPWRDELVEEMFSDWELRNQ

A0A5D3CTT5 Putative nuclease HARBI1

8.2e-53

83.06

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Query:  LAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILT-CLLHNLIDREMTNFNIEDDIDEVDSTHATTVGDDIHYIE
        L EWRGA+NAPST KEFFNMKHSS  N+I+RAFGVLK RW IL+EKSYYPVKVQCRTILT CLLHNLI+REMTNF+IED+IDEVDSTHATT  DDIHYIE
Subjt:  LAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILT-CLLHNLIDREMTNFNIEDDIDEVDSTHATTVGDDIHYIE

Query:  TSNEWTPWRDELVEEMFSDWELRN
        TSNEWT WRD+L EEMF+ WELRN
Subjt:  TSNEWTPWRDELVEEMFSDWELRN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G10890.1 unknown protein

3.1e-04

41.27

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Query:  GVLGLHRRGFSDTLQRPMLPLAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTIL
        G LG HR        R +  L ++ G    P T +E FN KH   R+VI R FGV K++W IL
Subjt:  GVLGLHRRGFSDTLQRPMLPLAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTIL

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

1.4e-09

32.33

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Query:  LAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILTC-LLHNLIDREMTNFNIEDDIDEV--DSTHATTVGDDIHY
        L E+ G +  P T  E FN++H S RNVI+R FG+ KSR+ I +    +  K Q   +LTC  LHN + +E  + +  D  DEV  +       G+ ++ 
Subjt:  LAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILTC-LLHNLIDREMTNFNIEDDIDEV--DSTHATTVGDDIHY

Query:  IETSNE------------WTPWRDELVEEMFSD
         E  NE               WR  + E+M+ D
Subjt:  IETSNE------------WTPWRDELVEEMFSD

Sequences

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CDS sequence

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ATGGTGAAAGAAAGCCAAGTAGAGGCATGGCGGAGCATGGCAGGGGTTCTCGGTCTACACCGAAGAGGGTTTTCTGACACCCTACAGAGGCCAATGCTACCACTTGCAGA
ATGGCGTGGTGCTAAAAATGCACCTTCAACGTGCAAAGAGTTCTTCAATATGAAGCATTCGTCTGCTCGTAATGTGATCAAAAGAGCATTTGGTGTCTTGAAGAGTCGGT
GGACGATACTGCAGGAAAAGTCATACTACCCTGTAAAAGTCCAATGTCGCACAATACTCACATGTCTCCTCCACAACCTTATCGATAGAGAGATGACAAACTTTAATATA
GAAGACGACATAGATGAGGTTGATTCCACCCACGCGACTACTGTCGGCGATGACATACATTATATAGAGACGTCCAATGAGTGGACTCCGTGGAGGGACGAGCTTGTAGA
AGAAATGTTTAGTGACTGGGAGTTGCGTAACCAATAG

mRNA sequence

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Protein sequence

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MVKESQVEAWRSMAGVLGLHRRGFSDTLQRPMLPLAEWRGAKNAPSTCKEFFNMKHSSARNVIKRAFGVLKSRWTILQEKSYYPVKVQCRTILTCLLHNLIDREMTNFNI
EDDIDEVDSTHATTVGDDIHYIETSNEWTPWRDELVEEMFSDWELRNQ

Pay0018671 (gene) of Melon (Payzawat) v1 genome