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Pay0018934 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0018934
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptionpolyadenylate-binding protein 1-like
Genome locationchr04:9508392..9508802
RNA-Seq ExpressionPay0018934
SyntenyPay0018934
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026054.1 polyadenylate-binding protein 1-like [Cucumis melo var. makuwa]1.9e-3097.18Show/hide
Query:  MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        MELDLQVDYA TPEEVQQHFQSCGTVNRVTILT+KFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
Subjt:  MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

KAA0060499.1 polyadenylate-binding protein 3-like isoform X2 [Cucumis melo var. makuwa]1.6e-29100Show/hide
Query:  QVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        QVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
Subjt:  QVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

RYR64526.1 hypothetical protein Ahy_A03g010619 isoform B [Arachis hypogaea]1.6e-2990.41Show/hide
Query:  MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        M L L+VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVE EAVQEAL+LNE+ELHGRQLKV P
Subjt:  MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

TYK22852.1 polyadenylate-binding protein 3-like isoform X2 [Cucumis melo var. makuwa]2.7e-32100Show/hide
Query:  MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
Subjt:  MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

XP_008464885.1 PREDICTED: polyadenylate-binding protein 1-like [Cucumis melo]4.4e-4396.74Show/hide
Query:  MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAPWGKMIYVSIQSSSTKANKV
        MELDLQVDYACTPEEV+QHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNET+LHGRQLKVAPWGKMIYVSI SSSTKANKV
Subjt:  MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAPWGKMIYVSIQSSSTKANKV

TrEMBL top hitse value%identityAlignment
A0A1S3CMM9 polyadenylate-binding protein 1-like2.1e-4396.74Show/hide
Query:  MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAPWGKMIYVSIQSSSTKANKV
        MELDLQVDYACTPEEV+QHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNET+LHGRQLKVAPWGKMIYVSI SSSTKANKV
Subjt:  MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAPWGKMIYVSIQSSSTKANKV

A0A445DMX4 RRM domain-containing protein7.8e-3090.41Show/hide
Query:  MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        M L L+VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVE EAVQEAL+LNE+ELHGRQLKV P
Subjt:  MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

A0A5A7SK28 Polyadenylate-binding protein 1-like9.2e-3197.18Show/hide
Query:  MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        MELDLQVDYA TPEEVQQHFQSCGTVNRVTILT+KFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
Subjt:  MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

A0A5A7V432 Polyadenylate-binding protein 3-like isoform X27.8e-30100Show/hide
Query:  QVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        QVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
Subjt:  QVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

A0A5D3DGW2 Polyadenylate-binding protein 3-like isoform X21.3e-32100Show/hide
Query:  MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
Subjt:  MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

SwissProt top hitse value%identityAlignment
O14327 Polyadenylate-binding protein 21.6e-1969.12Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        VDY+ TPEE+Q HF SCG+VNRVTIL DKF GHPKGFAY+EF E   V  ALLLN + LH R LKV P
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

Q93VI4 Polyadenylate-binding protein 11.1e-2887.88Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA
        VDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+LNE+ELHGRQ+KV+
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA

Q9DDY9 Polyadenylate-binding protein 2-A1.1e-1760.29Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        VDY  T EE++ HF  CG+VNRVTIL DKF GHPKGFAY+EF + E+V+ +L L+E+   GRQ+KV P
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

Q9FJN9 Polyadenylate-binding protein 22.4e-2890.77Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        VDYACTPEEVQQHFQ+CGTV+RVTILTDKFG PKGFAYVEFVE EAVQEAL LNE+ELHGRQLKV
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

Q9LX90 Polyadenylate-binding protein 31.8e-2888.06Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        VDYACTPEEVQ HFQ+CGTVNRVTIL DKFG PKGFAYVEFVE EAVQEAL LNE+ELHGRQLKV+P
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

Arabidopsis top hitse value%identityAlignment
AT5G10350.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.3e-2988.06Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        VDYACTPEEVQ HFQ+CGTVNRVTIL DKFG PKGFAYVEFVE EAVQEAL LNE+ELHGRQLKV+P
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

AT5G10350.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.3e-2988.06Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        VDYACTPEEVQ HFQ+CGTVNRVTIL DKFG PKGFAYVEFVE EAVQEAL LNE+ELHGRQLKV+P
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

AT5G51120.1 polyadenylate-binding protein 17.7e-3087.88Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA
        VDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+LNE+ELHGRQ+KV+
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA

AT5G51120.2 polyadenylate-binding protein 17.7e-3087.88Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA
        VDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+LNE+ELHGRQ+KV+
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA

AT5G51120.3 polyadenylate-binding protein 17.7e-3087.88Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA
        VDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+LNE+ELHGRQ+KV+
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTGGACTTGCAGGTTGATTATGCGTGTACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACGGATAAATTTGG
TCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAGCTGTTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGGTAGCTCCTT
GGGGAAAGATGATTTACGTTTCTATTCAATCAAGTTCAACAAAAGCAAACAAAGTTAATGAATTGGTATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTGGACTTGCAGGTTGATTATGCGTGTACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACGGATAAATTTGG
TCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAGCTGTTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGGTAGCTCCTT
GGGGAAAGATGATTTACGTTTCTATTCAATCAAGTTCAACAAAAGCAAACAAAGTTAATGAATTGGTATATTGA
Protein sequenceShow/hide protein sequence
MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAPWGKMIYVSIQSSSTKANKVNELVY