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Pay0018944 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0018944
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionBeta-galactosidase
Genome locationchr01:25916570..25920924
RNA-Seq ExpressionPay0018944
SyntenyPay0018944
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0120115 - Lsm2-8 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0005525 - GTP binding (molecular function)
GO:0016491 - oxidoreductase activity (molecular function)
GO:0051287 - NAD binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR016654 - U6 snRNA-associated Sm-like protein LSm2
IPR025724 - GAG-pre-integrase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025813.1 Beta-galactosidase [Cucumis melo var. makuwa]1.3e-4582.61Show/hide
Query:  DLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPT
        DL+ G TI TA HS  LYIL+D+TS SSIS TSL SSYFSTSEHDFMLWHFRLGHPNFTYMKYLF  LFPKIDVS LSCDVCIRAKQ+RVSFPSQPYKPT
Subjt:  DLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPT

Query:  QPFTLIHCDVWVPPR
        QPFTLIH DVW P +
Subjt:  QPFTLIHCDVWVPPR

KAA0041352.1 Beta-galactosidase [Cucumis melo var. makuwa]1.2e-4380.87Show/hide
Query:  DLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPT
        DL+ G TI TA HSR LYIL+D TS SSIS TSL SSYFSTSEHDFMLWHFRLGHPNFTYMKYLF  LF KIDVS LSCDVCI AKQ+RV FPSQPYKPT
Subjt:  DLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPT

Query:  QPFTLIHCDVWVPPR
        QPFTLIH DVW P +
Subjt:  QPFTLIHCDVWVPPR

KAA0066242.1 Beta-galactosidase [Cucumis melo var. makuwa]2.1e-4380Show/hide
Query:  DLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPT
        +L+ G TI TA HSR LYIL+D TS SSIS TSL SSY STSEHD+MLWHFRLGHPNFTYMKYLF  LF KIDVS LSCDVCIRAKQ+RVSFPSQPYKPT
Subjt:  DLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPT

Query:  QPFTLIHCDVWVPPR
        QPFTLIH DVW P +
Subjt:  QPFTLIHCDVWVPPR

TYK05539.1 Beta-galactosidase [Cucumis melo var. makuwa]1.1e-4483.48Show/hide
Query:  DLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPT
        DLSLG  I TA HSRRLYILDD T  SSISR SL SSYFSTSEHDFMLWHFRLGHPNFTYMK LF  LFPKIDVSLLSCDVCI AKQ+RVSFPSQ YKPT
Subjt:  DLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPT

Query:  QPFTLIHCDVWVPPR
        QPFTLIH DVW P +
Subjt:  QPFTLIHCDVWVPPR

XP_008458017.1 PREDICTED: uncharacterized protein LOC103497556 isoform X1 [Cucumis melo]1.1e-100100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMDLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDF
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMDLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDF
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMDLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDF

Query:  MLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPTQPFTLIHCDVWVPPRSPPHLENGGL
        MLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPTQPFTLIHCDVWVPPRSPPHLENGGL
Subjt:  MLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPTQPFTLIHCDVWVPPRSPPHLENGGL

TrEMBL top hitse value%identityAlignment
A0A1S3C7G1 uncharacterized protein LOC103497556 isoform X15.3e-101100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMDLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDF
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMDLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDF
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMDLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDF

Query:  MLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPTQPFTLIHCDVWVPPRSPPHLENGGL
        MLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPTQPFTLIHCDVWVPPRSPPHLENGGL
Subjt:  MLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPTQPFTLIHCDVWVPPRSPPHLENGGL

A0A5A7TD25 Beta-galactosidase6.0e-4480.87Show/hide
Query:  DLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPT
        DL+ G TI TA HSR LYIL+D TS SSIS TSL SSYFSTSEHDFMLWHFRLGHPNFTYMKYLF  LF KIDVS LSCDVCI AKQ+RV FPSQPYKPT
Subjt:  DLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPT

Query:  QPFTLIHCDVWVPPR
        QPFTLIH DVW P +
Subjt:  QPFTLIHCDVWVPPR

A0A5A7VD20 Beta-galactosidase1.0e-4380Show/hide
Query:  DLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPT
        +L+ G TI TA HSR LYIL+D TS SSIS TSL SSY STSEHD+MLWHFRLGHPNFTYMKYLF  LF KIDVS LSCDVCIRAKQ+RVSFPSQPYKPT
Subjt:  DLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPT

Query:  QPFTLIHCDVWVPPR
        QPFTLIH DVW P +
Subjt:  QPFTLIHCDVWVPPR

A0A5D3C565 Beta-galactosidase5.4e-4583.48Show/hide
Query:  DLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPT
        DLSLG  I TA HSRRLYILDD T  SSISR SL SSYFSTSEHDFMLWHFRLGHPNFTYMK LF  LFPKIDVSLLSCDVCI AKQ+RVSFPSQ YKPT
Subjt:  DLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPT

Query:  QPFTLIHCDVWVPPR
        QPFTLIH DVW P +
Subjt:  QPFTLIHCDVWVPPR

A0A5D3CCR1 Beta-galactosidase6.4e-4682.61Show/hide
Query:  DLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPT
        DL+ G TI TA HS  LYIL+D+TS SSIS TSL SSYFSTSEHDFMLWHFRLGHPNFTYMKYLF  LFPKIDVS LSCDVCIRAKQ+RVSFPSQPYKPT
Subjt:  DLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPT

Query:  QPFTLIHCDVWVPPR
        QPFTLIH DVW P +
Subjt:  QPFTLIHCDVWVPPR

SwissProt top hitse value%identityAlignment
O35900 U6 snRNA-associated Sm-like protein LSm23.9e-1674.07Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHM
        MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D EKYPHM
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHM

O94408 U6 snRNA-associated Sm-like protein LSm23.3e-1570.37Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHM
        MLF+S+FK L+  EVTVELKND++IRG L SVDQ+LN+KLEN  VVD  KYPHM
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHM

Q1H595 Sm-like protein LSM23.3e-2396.3Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHM
        MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ+KYPHM
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHM

Q54TF6 Probable U6 snRNA-associated Sm-like protein LSm23.7e-1464.81Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHM
        MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V +++KYP+M
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHM

Q9Y333 U6 snRNA-associated Sm-like protein LSm23.9e-1674.07Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHM
        MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D EKYPHM
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHM

Arabidopsis top hitse value%identityAlignment
AT1G03330.1 Small nuclear ribonucleoprotein family protein2.3e-2496.3Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHM
        MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ+KYPHM
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTATTTTTCTCATACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTTGAGTTGAAGAACGACCTAGCAATTCGAGGAACTTTGCATTCTGTAGATCAGTATCTCAA
CATCAAACTGGAAAACACGAGGGTTGTCGATCAAGAAAAATACCCTCACATGGACTTGAGTTTGGGATGGACGATTGACACTGCCTGGCATAGCAGGAGACTTTACATCC
TTGATGATCATACCTCCAGTAGTAGTATCTCTAGGACTAGTTTACAGTCTTCCTATTTTAGCACTTCTGAACATGACTTTATGTTATGGCATTTTCGGTTGGGTCACCCG
AACTTTACTTATATGAAATATTTGTTTTCCCGTCTCTTTCCTAAAATAGATGTCTCCTTGTTATCTTGTGATGTGTGCATTCGGGCAAAACAATATCGAGTTTCTTTTCC
TTCACAACCATATAAACCCACACAACCGTTTACCCTTATCCATTGTGACGTTTGGGTCCCTCCAAGGTCACCACCTCATCTGGAAAATGGTGGTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATAAAAAGTCCAAAAATTATTTTCTCCTTGAGATAAGATAACATAATAATCTAAATCCCAAGGAGGTATGTTTTCTCGATTGATAGCTCAGACGACTTTTAAACATATAC
CGGTTGTCGATCGTCGAGCGCAGATAAAGTGAAGGTTGGGATCTCAAACCTCCAGTGAAAATGTTATTTTTCTCATACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGT
TGAGTTGAAGAACGACCTAGCAATTCGAGGAACTTTGCATTCTGTAGATCAGTATCTCAACATCAAACTGGAAAACACGAGGGTTGTCGATCAAGAAAAATACCCTCACA
TGGACTTGAGTTTGGGATGGACGATTGACACTGCCTGGCATAGCAGGAGACTTTACATCCTTGATGATCATACCTCCAGTAGTAGTATCTCTAGGACTAGTTTACAGTCT
TCCTATTTTAGCACTTCTGAACATGACTTTATGTTATGGCATTTTCGGTTGGGTCACCCGAACTTTACTTATATGAAATATTTGTTTTCCCGTCTCTTTCCTAAAATAGA
TGTCTCCTTGTTATCTTGTGATGTGTGCATTCGGGCAAAACAATATCGAGTTTCTTTTCCTTCACAACCATATAAACCCACACAACCGTTTACCCTTATCCATTGTGACG
TTTGGGTCCCTCCAAGGTCACCACCTCATCTGGAAAATGGTGGTTTGTAACTTTCATTGATGATTATACCCGTCTTACCTAGGTCTACCTTATCACCTACAAATCTGAAG
TTTTCTCTATTTTTCAAAACTTCTATCACTCAATTGAAAACACAATTCCATAAAAAATTGCTATTCTTTGGAGTGGTAATGTTTGGGAATTTCAAAACCATAACCTTAGT
GAATTTCTAGCCTTCAAGGGGATTGTTCAGCAAAACTTGTGTGCCTACACTCAACAAAATAGAATGGTCGAGCGAAAAAACCGTCACCTTCTGGAAGTAGCCCGTTCCCT
TATGTTTTCCACTTTCCTTCCTTCATACCTGTAGGGAGATGCTATTCTTACAGCAACTCATTTAATCAATAGAATGTCTTCTTGTATCCTCCACCTTTAGACTCCTTTAG
AATGTCTTAAGGAGTTCTACCCCTCTACTCATCTTGTTTCTGAGGTTCCTCTTTGTGTGTTTGGGTGTACCACTTATGTCCATAATTTTAGCCCTAATCAGACCAAATTT
ACCCCTCAGGCTCAGGCTTGTGTGTTTGTTGGGTATCCTCTTCACCAACGCAGTTATAAATGTTATCGTCCGTCGTCCAGGAAATACCGTCACTATAGATGTTACTTTCT
ATGAGGATTGGCCCTATTTTCCCATTAGCCATCTTCAGGGAGAGAGTAAGTGAAGAGTCTAACAGCACCTTTGAAATTTATTGAACGTATTCCTAGTACTGTGTCTGACA
TTGATCCTCATCCTATAATCCTACCCACAAACCAAGTTCCCTGTAAAACGTATTACAGGAGAAATCTTAGAAAGGAAGTTGGATCCCTTACTAGTCAGCCACCG
Protein sequenceShow/hide protein sequence
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMDLSLGWTIDTAWHSRRLYILDDHTSSSSISRTSLQSSYFSTSEHDFMLWHFRLGHP
NFTYMKYLFSRLFPKIDVSLLSCDVCIRAKQYRVSFPSQPYKPTQPFTLIHCDVWVPPRSPPHLENGGL