; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Pay0019015 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0019015
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr06:15477409..15478298
RNA-Seq ExpressionPay0019015
SyntenyPay0019015
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK01623.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.0e-8574.29Show/hide
Query:  RAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGTF-------VSAALGT
        +AGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSS DYQTVHIRGFKFVIS TVIN FLGNVIDVY SPSSPSTNVLASVLSGGT        + A   +
Subjt:  RAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGTF-------VSAALGT

Query:  FLYRICNDNKV-----NTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLALSYRLFQDSHDESAEGFFVDRELAARIVN
          Y I +   +     ++ A   +  L    SFGV+TFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLALSYRLFQDSH    +   +     ARIVN
Subjt:  FLYRICNDNKV-----NTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLALSYRLFQDSHDESAEGFFVDRELAARIVN

Query:  ALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRRESTTD
        ALTFES ALTYSINLLSERRLEIDALIRHLKTF+PSTSRRESTTD
Subjt:  ALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRRESTTD

XP_008457126.1 PREDICTED: uncharacterized protein LOC103496872 [Cucumis melo]5.6e-11681.91Show/hide
Query:  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGTF---------
        MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGT          
Subjt:  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGTF---------

Query:  ---------------------------VSAALGTFLYRICNDNKVNTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLA
                                   VSAALGTFLYRICNDNKVNTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLA
Subjt:  ---------------------------VSAALGTFLYRICNDNKVNTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLA

Query:  LSYRLFQDSHDESAE--------GFFVDRELAARIVNALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRRESTTD
        LSYRLFQDSH    +         FFVDRELAARIVNALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRRESTTD
Subjt:  LSYRLFQDSHDESAE--------GFFVDRELAARIVNALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRRESTTD

XP_008461531.1 PREDICTED: uncharacterized protein LOC103500102 [Cucumis melo]6.4e-9674.07Show/hide
Query:  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGT----------
        MDLIER GLTKTISN+ PFYPQLIRE IV FP+DFND SS DYQTVHIRGFKF+I  +VINGFLGNVI V CSPSSPST+VLASVLSGGT          
Subjt:  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGT----------

Query:  -------FVSAALGTFLYRICNDNKVNTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLALSYRLFQDSH---------
                VS ALGTFLY+ICND+KV+TGAFIYNQL +HV SFGVK  IALPRLF +LLLHLNG VLT  DT  PDPKTLALSYRLFQ SH         
Subjt:  -------FVSAALGTFLYRICNDNKVNTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLALSYRLFQDSH---------

Query:  ------DESAEGFFVDRELAARIVNALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRRESTTD
              DESAEGFFVDRELAA IVNALT ES ALT SINLLSER LEIDALIRHLKTFAPSTSRRESTTD
Subjt:  ------DESAEGFFVDRELAARIVNALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRRESTTD

XP_008463658.1 PREDICTED: uncharacterized protein LOC103501750 [Cucumis melo]2.3e-8560.81Show/hide
Query:  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGTF---------
        M+LIE AGL+KTISNVGPFYPQLI++FIVN P++FNDPSS DYQTVHIRGFKF+IS+ VINGFLGN + + CS SSPS  VLA VLSGGT          
Subjt:  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGTF---------

Query:  ---------------------------VSAALGTFLYRICNDNKVNTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLA
                                   VSAALGTFLYRICND+KV+TGAFI+N+LLRHV  FGVK  IALPR FS++LLHLN  V+TA+D  GP+PKTL+
Subjt:  ---------------------------VSAALGTFLYRICNDNKVNTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLA

Query:  LSYRLFQDSH----------------------DESAEGFFVDRELAARIVNALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRRESTTD
        LSYRLFQ SH                      DESA+GFFVDRELA+RIVN+LT ESRAL+ SINLLSE +LE+D LIRHLKTF PSTS+R+  +D
Subjt:  LSYRLFQDSH----------------------DESAEGFFVDRELAARIVNALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRRESTTD

XP_008466681.1 PREDICTED: uncharacterized protein LOC103504033 [Cucumis melo]3.0e-8562.54Show/hide
Query:  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGTF---------
        MDLI +AGL KTISNVGPFYPQLIREFIVN P++FN+PSS DYQTVHIRGFKFVIS T INGFLGN ID+ CS S P T VLA+VLSGGT          
Subjt:  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGTF---------

Query:  ---------------------------VSAALGTFLYRICNDNKVNTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLA
                                   +S ALG FLY+ICND+KV+TGAFIYNQLLRHV SFGVK  IAL RLF +LLLHLNGAVLTA+DT  P+PKT+A
Subjt:  ---------------------------VSAALGTFLYRICNDNKVNTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLA

Query:  LSYRLFQDSH----------------------DESAEGFFVDRELAARIVNALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRR
        LSYRLFQ  H                      DESAEGF+VDRELA  I+N+LT ES ALT SI LLSERRLE+DALIRHLK+ APSTSR+
Subjt:  LSYRLFQDSH----------------------DESAEGFFVDRELAARIVNALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRR

TrEMBL top hitse value%identityAlignment
A0A1S3C633 uncharacterized protein LOC1034968722.7e-11681.91Show/hide
Query:  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGTF---------
        MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGT          
Subjt:  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGTF---------

Query:  ---------------------------VSAALGTFLYRICNDNKVNTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLA
                                   VSAALGTFLYRICNDNKVNTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLA
Subjt:  ---------------------------VSAALGTFLYRICNDNKVNTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLA

Query:  LSYRLFQDSHDESAE--------GFFVDRELAARIVNALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRRESTTD
        LSYRLFQDSH    +         FFVDRELAARIVNALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRRESTTD
Subjt:  LSYRLFQDSHDESAE--------GFFVDRELAARIVNALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRRESTTD

A0A1S3CFE8 uncharacterized protein LOC1035001023.1e-9674.07Show/hide
Query:  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGT----------
        MDLIER GLTKTISN+ PFYPQLIRE IV FP+DFND SS DYQTVHIRGFKF+I  +VINGFLGNVI V CSPSSPST+VLASVLSGGT          
Subjt:  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGT----------

Query:  -------FVSAALGTFLYRICNDNKVNTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLALSYRLFQDSH---------
                VS ALGTFLY+ICND+KV+TGAFIYNQL +HV SFGVK  IALPRLF +LLLHLNG VLT  DT  PDPKTLALSYRLFQ SH         
Subjt:  -------FVSAALGTFLYRICNDNKVNTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLALSYRLFQDSH---------

Query:  ------DESAEGFFVDRELAARIVNALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRRESTTD
              DESAEGFFVDRELAA IVNALT ES ALT SINLLSER LEIDALIRHLKTFAPSTSRRESTTD
Subjt:  ------DESAEGFFVDRELAARIVNALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRRESTTD

A0A1S3CJS2 uncharacterized protein LOC1035017501.1e-8560.81Show/hide
Query:  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGTF---------
        M+LIE AGL+KTISNVGPFYPQLI++FIVN P++FNDPSS DYQTVHIRGFKF+IS+ VINGFLGN + + CS SSPS  VLA VLSGGT          
Subjt:  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGTF---------

Query:  ---------------------------VSAALGTFLYRICNDNKVNTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLA
                                   VSAALGTFLYRICND+KV+TGAFI+N+LLRHV  FGVK  IALPR FS++LLHLN  V+TA+D  GP+PKTL+
Subjt:  ---------------------------VSAALGTFLYRICNDNKVNTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLA

Query:  LSYRLFQDSH----------------------DESAEGFFVDRELAARIVNALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRRESTTD
        LSYRLFQ SH                      DESA+GFFVDRELA+RIVN+LT ESRAL+ SINLLSE +LE+D LIRHLKTF PSTS+R+  +D
Subjt:  LSYRLFQDSH----------------------DESAEGFFVDRELAARIVNALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRRESTTD

A0A5A7TDT9 Uncharacterized protein1.4e-8562.54Show/hide
Query:  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGTF---------
        MDLI +AGL KTISNVGPFYPQLIREFIVN P++FN+PSS DYQTVHIRGFKFVIS T INGFLGN ID+ CS S P T VLA+VLSGGT          
Subjt:  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGTF---------

Query:  ---------------------------VSAALGTFLYRICNDNKVNTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLA
                                   +S ALG FLY+ICND+KV+TGAFIYNQLLRHV SFGVK  IAL RLF +LLLHLNGAVLTA+DT  P+PKT+A
Subjt:  ---------------------------VSAALGTFLYRICNDNKVNTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLA

Query:  LSYRLFQDSH----------------------DESAEGFFVDRELAARIVNALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRR
        LSYRLFQ  H                      DESAEGF+VDRELA  I+N+LT ES ALT SI LLSERRLE+DALIRHLK+ APSTSR+
Subjt:  LSYRLFQDSH----------------------DESAEGFFVDRELAARIVNALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRR

A0A5D3BPJ2 Gag-pol polyprotein4.9e-8674.29Show/hide
Query:  RAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGTF-------VSAALGT
        +AGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSS DYQTVHIRGFKFVIS TVIN FLGNVIDVY SPSSPSTNVLASVLSGGT        + A   +
Subjt:  RAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGTF-------VSAALGT

Query:  FLYRICNDNKV-----NTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLALSYRLFQDSHDESAEGFFVDRELAARIVN
          Y I +   +     ++ A   +  L    SFGV+TFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLALSYRLFQDSH    +   +     ARIVN
Subjt:  FLYRICNDNKV-----NTGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLALSYRLFQDSHDESAEGFFVDRELAARIVN

Query:  ALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRRESTTD
        ALTFES ALTYSINLLSERRLEIDALIRHLKTF+PSTSRRESTTD
Subjt:  ALTFESRALTYSINLLSERRLEIDALIRHLKTFAPSTSRRESTTD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCTTATTGAAAGGGCTGGTTTAACAAAAACTATTTCGAATGTCGGTCCATTTTATCCCCAGCTTATTAGGGAGTTTATAGTTAATTTTCCTAATGATTTTAATGA
TCCAAGTAGCCCGGATTATCAGACGGTTCATATTCGAGGGTTCAAATTTGTGATTTCTTCTACTGTGATTAACGGGTTTTTAGGGAATGTTATTGATGTTTACTGTTCTC
CATCGTCTCCTTCCACTAATGTTCTAGCTTCTGTCTTATCTGGTGGGACGTTTGTATCTGCTGCCTTAGGAACATTTCTGTATCGAATCTGCAATGATAATAAGGTGAAT
ACGGGTGCATTCATTTACAATCAGTTGTTACGTCATGTTAGTTCATTTGGGGTTAAGACTTTCATTGCTCTTCCGCGACTCTTCTCAAATCTGTTACTACACCTCAACGG
AGCTGTGCTCACTGCAGCTGATACTTCTGGACCTGACCCTAAAACTTTAGCCCTTAGCTACAGACTCTTTCAGGACAGTCATGATGAGTCTGCTGAAGGTTTCTTTGTTG
ATCGTGAGTTAGCTGCCCGCATTGTTAATGCTCTGACTTTTGAATCTCGTGCCTTAACCTACTCCATCAATCTGTTGTCTGAACGACGGTTGGAAATTGATGCCCTCATT
CGACACTTGAAGACCTTTGCTCCATCTACTAGTCGTAGAGAATCAACTACTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACCTTATTGAAAGGGCTGGTTTAACAAAAACTATTTCGAATGTCGGTCCATTTTATCCCCAGCTTATTAGGGAGTTTATAGTTAATTTTCCTAATGATTTTAATGA
TCCAAGTAGCCCGGATTATCAGACGGTTCATATTCGAGGGTTCAAATTTGTGATTTCTTCTACTGTGATTAACGGGTTTTTAGGGAATGTTATTGATGTTTACTGTTCTC
CATCGTCTCCTTCCACTAATGTTCTAGCTTCTGTCTTATCTGGTGGGACGTTTGTATCTGCTGCCTTAGGAACATTTCTGTATCGAATCTGCAATGATAATAAGGTGAAT
ACGGGTGCATTCATTTACAATCAGTTGTTACGTCATGTTAGTTCATTTGGGGTTAAGACTTTCATTGCTCTTCCGCGACTCTTCTCAAATCTGTTACTACACCTCAACGG
AGCTGTGCTCACTGCAGCTGATACTTCTGGACCTGACCCTAAAACTTTAGCCCTTAGCTACAGACTCTTTCAGGACAGTCATGATGAGTCTGCTGAAGGTTTCTTTGTTG
ATCGTGAGTTAGCTGCCCGCATTGTTAATGCTCTGACTTTTGAATCTCGTGCCTTAACCTACTCCATCAATCTGTTGTCTGAACGACGGTTGGAAATTGATGCCCTCATT
CGACACTTGAAGACCTTTGCTCCATCTACTAGTCGTAGAGAATCAACTACTGATTGA
Protein sequenceShow/hide protein sequence
MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVINGFLGNVIDVYCSPSSPSTNVLASVLSGGTFVSAALGTFLYRICNDNKVN
TGAFIYNQLLRHVSSFGVKTFIALPRLFSNLLLHLNGAVLTAADTSGPDPKTLALSYRLFQDSHDESAEGFFVDRELAARIVNALTFESRALTYSINLLSERRLEIDALI
RHLKTFAPSTSRRESTTD