CuGenDBv2

Gene ID	Pay0019017
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	DNA primase
Genome location	chr11:7033158..7035059
RNA-Seq Expression	Pay0019017
Synteny	Pay0019017
Gene Ontology terms	GO:0006269 - DNA replication, synthesis of RNA primer (biological process) GO:0006865 - amino acid transport (biological process) GO:0009734 - auxin-activated signaling pathway (biological process) GO:0055085 - transmembrane transport (biological process) GO:0005658 - alpha DNA polymerase:primase complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003896 - DNA primase activity (molecular function) GO:0015293 - symporter activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR002755 - DNA primase, small subunit IPR014052 - DNA primase, small subunit, eukaryotic/archaeal

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034894.1 amino acid permease 3-like [Cucumis melo var. makuwa]

6.0e-39

100

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Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
        MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET

KAA0039338.1 DNA primase, small subunit [Cucumis melo var. makuwa]

1.8e-38

97.53

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Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETG
        MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETG
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETG

XP_022925368.1 DNA primase small subunit [Cucurbita moschata]

7.4e-37

96.25

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Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
        MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPE CDEFDPTTVPTVAQLLEELNAADMEVDSET
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET

XP_022973496.1 DNA primase small subunit [Cucurbita maxima]

7.4e-37

96.25

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Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
        MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPE CDEFDPTTVPTVAQLLEELNAADMEVDSET
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET

XP_023522158.1 DNA primase small subunit-like [Cucurbita pepo subsp. pepo]

8.7e-38

97.5

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Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
        MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KUP7 DNA primase

8.0e-37

96.2

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Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSE
        MRR+VEEIVFSFTYPRL+ EVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSE
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSE

A0A5A7SUG1 Amino acid permease 3-like

2.9e-39

100

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Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
        MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET

A0A5A7T8Y3 DNA primase

8.5e-39

97.53

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Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETG
        MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETG
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETG

A0A6J1EEZ9 DNA primase

3.6e-37

96.25

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Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
        MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPE CDEFDPTTVPTVAQLLEELNAADMEVDSET
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET

A0A6J1I8T4 DNA primase

3.6e-37

96.25

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Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET
        MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPE CDEFDPTTVPTVAQLLEELNAADMEVDSET
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSET

SwissProt top hits

e value

%identity

Alignment

O14215 DNA primase small subunit

1.6e-18

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Query:  EEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELN
        ++IV ++ YPRL++EV++H+NHLLK+PFCVHP T R+CVPID E  D F+P  VPTV  LL+EL+
Subjt:  EEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELN

P49642 DNA primase small subunit

7.5e-16

56.92

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Query:  EIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNA
        EI+  + +PRL++ V+K +NHLLK+PF VHPKTGRI VPID +  D+FDP TVPT++ +  EL+A
Subjt:  EIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNA

Q24317 DNA primase small subunit

2.1e-18

54.79

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Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAAD
        ++  V EI     YPRL++ VT+  NHLLKAPFC+HP TG++CVP       +FDPTTVPT+ QLL E+NA D
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAAD

Q25998 DNA primase small subunit

3.0e-17

52.86

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Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELN
        M  +V+EIVF FTYPRL++ V+K +NHLLK+PFC+H  TGR+CVP+D ++ + F+P +VPT+  L E+ +
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELN

Q7KQM1 DNA primase small subunit

3.0e-17

52.86

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Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELN
        M  +V+EIVF FTYPRL++ V+K +NHLLK+PFC+H  TGR+CVP+D ++ + F+P +VPT+  L E+ +
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELN

Arabidopsis top hits

e value

%identity

Alignment

AT5G41880.1 DNA primases;DNA primases

7.1e-30

70.13

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Query:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVD
        +R  VEEIVF+FTYPR++LEV+K MNHLLKAPFCVHPKTGR+CVPIDP +CDEFDP  VPT++QL+EE+N+  + +D
Subjt:  MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVD

Sequences

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CDS sequence

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ATGCGTAGGTATGTTGAAGAGATTGTTTTCTCTTTTACCTACCCTAGGCTTAATTTGGAGGTTACTAAACACATGAACCATCTGCTAAAAGCACCATTCTGTGTTCATCC
CAAAACAGGTCGTATCTGTGTCCCAATAGACCCTGAACACTGTGATGAGTTTGATCCTACTACTGTGCCAACTGTTGCCCAGCTCCTAGAAGAACTTAATGCAGCAGACA
TGGAAGTAGATAGTGAGACTGGTACGTTATACGATATCCTATCTTTACTATAG

mRNA sequence

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Protein sequence

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MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETGTLYDILSLL

Pay0019017 (gene) of Melon (Payzawat) v1 genome